BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0715.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773833.1| periplasmic protein TonB, links inner and ou... 333 1e-89 ref|YP_001354653.1| hypothetical protein mma_2963 [Janthinobacte... 241 7e-62 emb|CAL62871.2| Conserved hypothetical protein; putative TonB pr... 241 7e-62 ref|YP_001100992.1| hypothetical protein HEAR2754 [Herminiimonas... 237 1e-60 ref|ZP_08274959.1| TonB protein [Oxalobacteraceae bacterium IMCC... 233 2e-59 >ref|YP_003773833.1| periplasmic protein TonB, links inner and outer membranes [Herbaspirillum seropedicae SmR1] gb|ADJ61925.1| periplasmic protein TonB, links inner and outer membranes, protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 173/208 (83%), Positives = 194/208 (93%) Query: 1 MQHVESGDSVKAAQRKVAELEQQQRKMLAQLQEARQHVASAEQQKPVETPQPNARDLTET 60 MQ V+SGDSVKAAQRKV ELEQQQR+M+AQL++++QHVASAEQQK E PQ NARD+ ET Sbjct: 100 MQRVDSGDSVKAAQRKVVELEQQQRRMMAQLKQSQQHVASAEQQKQTEAPQLNARDMIET 159 Query: 61 AKAMARMEAELAKDIAQYNKRPKKTQITPSTREVGYAQYFKALQDKIEKVGTLNFPTRDG 120 A+AMARMEAE+A+DI QYNKRPKKTQITPSTREVGYAQY+K LQDKIEKVGTLNFPT+DG Sbjct: 160 ARAMARMEAEVARDIEQYNKRPKKTQITPSTREVGYAQYYKTLQDKIEKVGTLNFPTKDG 219 Query: 121 KKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNAALDQAAVAIVRRSVPFGRFPENMRT 180 KKLYGELL+VIPVFQDGSIYERDGGVVV++SSGNAALDQAAVAIVRRS PFGRFP+NMRT Sbjct: 220 KKLYGELLIVIPVFQDGSIYERDGGVVVKSSSGNAALDQAAVAIVRRSAPFGRFPDNMRT 279 Query: 181 SGKDDVWEVIVTFRFTRDQGVQAELGAG 208 G+DDVWE+I FRFTRDQG+QA+LG G Sbjct: 280 GGRDDVWEIITRFRFTRDQGLQAQLGGG 307 >ref|YP_001354653.1| hypothetical protein mma_2963 [Janthinobacterium sp. Marseille] gb|ABR89401.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 304 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 125/207 (60%), Positives = 161/207 (77%), Gaps = 3/207 (1%) Query: 1 MQHVESGDSVKAAQRKVAELEQQQRKMLAQLQEARQ-HVASAEQQKPVET--PQPNARDL 57 ++ E GDS KAA+RK+ ELE+ Q+K+LAQ+++ H +PV+ PQ NA D+ Sbjct: 94 LRKSEDGDSAKAARRKIEELERHQQKLLAQMEKKTAVHTPKVSDVEPVKDLPPQRNAVDM 153 Query: 58 TETAKAMARMEAELAKDIAQYNKRPKKTQITPSTREVGYAQYFKALQDKIEKVGTLNFPT 117 ++AKA+ R EAE+++ I +YNKRPKKTQ+TPSTREVGYA Y+KALQD+IEK GTLNFP Sbjct: 154 LDSAKALLRREAEISRSIEEYNKRPKKTQVTPSTREVGYAAYYKALQDRIEKNGTLNFPQ 213 Query: 118 RDGKKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNAALDQAAVAIVRRSVPFGRFPEN 177 +DGKKLYG+L+V IP+FQDG+IY ++GG V +SGN ALDQAA+ IVRRS PFG+FPEN Sbjct: 214 KDGKKLYGQLVVYIPIFQDGTIYMKEGGPRVERTSGNPALDQAALNIVRRSAPFGKFPEN 273 Query: 178 MRTSGKDDVWEVIVTFRFTRDQGVQAE 204 MR+ GKDDVWE+I F FTRD +Q E Sbjct: 274 MRSVGKDDVWEIITRFNFTRDDALQTE 300 >emb|CAL62871.2| Conserved hypothetical protein; putative TonB protein [Herminiimonas arsenicoxydans] Length = 304 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 130/205 (63%), Positives = 159/205 (77%), Gaps = 7/205 (3%) Query: 5 ESGDSVKAAQRKVAELEQQQRKMLAQLQEARQHVASAEQQKPVET-----PQPNARDLTE 59 E GDS KAA+RKV ELE+ Q+K+L+QL AR+ A Q VE PQ NA D+ + Sbjct: 98 EDGDSAKAARRKVEELERHQQKLLSQL--ARKTPFRAPQVTDVEPVKDLPPQRNATDMLD 155 Query: 60 TAKAMARMEAELAKDIAQYNKRPKKTQITPSTREVGYAQYFKALQDKIEKVGTLNFPTRD 119 +AKA+ R EAE+A+ + YNKRPKKTQ+TPSTREVGYA Y+KA QD+IEK GTLNFP +D Sbjct: 156 SAKALLRREAEIARSVEDYNKRPKKTQVTPSTREVGYAAYYKAFQDRIEKYGTLNFPQKD 215 Query: 120 GKKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNAALDQAAVAIVRRSVPFGRFPENMR 179 GKKLYG+L++ IP+FQDG+IY +DGG V SSGN ALDQAA+ IVRRSVPFG+FPE+MR Sbjct: 216 GKKLYGDLILFIPIFQDGTIYMKDGGPRVERSSGNPALDQAALNIVRRSVPFGKFPEHMR 275 Query: 180 TSGKDDVWEVIVTFRFTRDQGVQAE 204 +SGKDDVWE+I F FTRD +Q E Sbjct: 276 SSGKDDVWEIITRFSFTRDDALQTE 300 >ref|YP_001100992.1| hypothetical protein HEAR2754 [Herminiimonas arsenicoxydans] Length = 249 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 130/205 (63%), Positives = 159/205 (77%), Gaps = 7/205 (3%) Query: 5 ESGDSVKAAQRKVAELEQQQRKMLAQLQEARQHVASAEQQKPVET-----PQPNARDLTE 59 E GDS KAA+RKV ELE+ Q+K+L+QL AR+ A Q VE PQ NA D+ + Sbjct: 43 EDGDSAKAARRKVEELERHQQKLLSQL--ARKTPFRAPQVTDVEPVKDLPPQRNATDMLD 100 Query: 60 TAKAMARMEAELAKDIAQYNKRPKKTQITPSTREVGYAQYFKALQDKIEKVGTLNFPTRD 119 +AKA+ R EAE+A+ + YNKRPKKTQ+TPSTREVGYA Y+KA QD+IEK GTLNFP +D Sbjct: 101 SAKALLRREAEIARSVEDYNKRPKKTQVTPSTREVGYAAYYKAFQDRIEKYGTLNFPQKD 160 Query: 120 GKKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNAALDQAAVAIVRRSVPFGRFPENMR 179 GKKLYG+L++ IP+FQDG+IY +DGG V SSGN ALDQAA+ IVRRSVPFG+FPE+MR Sbjct: 161 GKKLYGDLILFIPIFQDGTIYMKDGGPRVERSSGNPALDQAALNIVRRSVPFGKFPEHMR 220 Query: 180 TSGKDDVWEVIVTFRFTRDQGVQAE 204 +SGKDDVWE+I F FTRD +Q E Sbjct: 221 SSGKDDVWEIITRFSFTRDDALQTE 245 >ref|ZP_08274959.1| TonB protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31565.1| TonB protein [Oxalobacteraceae bacterium IMCC9480] Length = 297 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 164/210 (78%), Gaps = 2/210 (0%) Query: 1 MQHVESGDSVKAAQRKVAELEQQQRKMLAQLQEARQHV--ASAEQQKPVETPQPNARDLT 58 ++ + GDSV+A +R+V++LEQ Q+K+L+Q+ + V + ++ + + P P+ D Sbjct: 86 LRRTQDGDSVQATRRRVSDLEQAQKKLLSQINKPTPLVIPSFSDLARLKQPPLPDGNDDQ 145 Query: 59 ETAKAMARMEAELAKDIAQYNKRPKKTQITPSTREVGYAQYFKALQDKIEKVGTLNFPTR 118 ++ K++AR EAE+A++I +YNKRPKKTQITP+TREVGYA Y+K+LQD+IEK GT+NFP + Sbjct: 146 DSTKSIARREAEIARNIEEYNKRPKKTQITPNTREVGYAMYYKSLQDRIEKRGTVNFPQQ 205 Query: 119 DGKKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNAALDQAAVAIVRRSVPFGRFPENM 178 DGKKLYGEL++ IPV+QDG+IYERDGG V SSGN ALD AA+ IVRR+ PFG+FP NM Sbjct: 206 DGKKLYGELVLYIPVYQDGTIYERDGGPRVERSSGNPALDNAALRIVRRAAPFGKFPPNM 265 Query: 179 RTSGKDDVWEVIVTFRFTRDQGVQAELGAG 208 R+S KDDVWE+I F+FTR+ ++AEL G Sbjct: 266 RSSDKDDVWEIITRFKFTREDALEAELRGG 295