BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0714.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773834.1| shikimate 5-dehydrogenase [Herbaspirillum se... 450 e-124 ref|YP_001354652.1| shikimate 5-dehydrogenase [Janthinobacterium... 332 4e-89 ref|YP_001100991.1| dehydroshikimate reductase [Herminiimonas ar... 331 9e-89 ref|YP_004751444.1| shikimate 5-dehydrogenase I alpha [Collimona... 330 1e-88 ref|YP_411238.1| shikimate 5-dehydrogenase [Nitrosospira multifo... 304 7e-81 >ref|YP_003773834.1| shikimate 5-dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ61926.1| shikimate 5-dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 241/271 (88%), Positives = 254/271 (93%) Query: 1 MDEYVVIGNPIAHSKSPEIHAQFAAQTGQSLHYDRLLVPLHGFKAAVQVFQRRGGRGANV 60 MDEYVVIGNPIAHSKSP+IHA+FAAQTGQS+ Y+RLLVPLHGFKAAVQVFQRRGGRGAN+ Sbjct: 1 MDEYVVIGNPIAHSKSPDIHARFAAQTGQSMSYERLLVPLHGFKAAVQVFQRRGGRGANI 60 Query: 61 TVPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMVNAGQALAGR 120 TVPFKLEAHALADQLTERARLAGAVNT KFE G ILGDNTDGAGLVTDIMVNAGQAL GR Sbjct: 61 TVPFKLEAHALADQLTERARLAGAVNTFKFEEGCILGDNTDGAGLVTDIMVNAGQALQGR 120 Query: 121 RVLLLGAGGASRGALLPLLQQQPAELVIVNRTQAKADELARQFREFGPVRSAAYAELEGV 180 R+LLLGAGGASRGALLPLLQQ+PAELV+VNRT ++A+ELA QF +GPVRS +A LEG Sbjct: 121 RILLLGAGGASRGALLPLLQQRPAELVVVNRTASRAEELATQFAAYGPVRSTTFAGLEGA 180 Query: 181 FDVIVNATSASLSDDLPPLPVSVYGSETLAYDMMYGRQPTVFMQSAQQHGASVRDGLGML 240 FDVIVNATSASLSDDLPPLP SVYGSETLAYDMMYGR PTVFMQSAQQHGA VRDGLGML Sbjct: 181 FDVIVNATSASLSDDLPPLPPSVYGSETLAYDMMYGRGPTVFMQSAQQHGAHVRDGLGML 240 Query: 241 VEQAAEAFQLWRGVRPATAEVFASLRQQLSQ 271 VEQAAEAFQ WRGVRPATAEVFASLRQQLSQ Sbjct: 241 VEQAAEAFQWWRGVRPATAEVFASLRQQLSQ 271 >ref|YP_001354652.1| shikimate 5-dehydrogenase [Janthinobacterium sp. Marseille] sp|A6T2A5|AROE_JANMA RecName: Full=Shikimate dehydrogenase gb|ABR88541.1| shikimate 5-dehydrogenase [Janthinobacterium sp. Marseille] Length = 273 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 172/268 (64%), Positives = 209/268 (77%) Query: 2 DEYVVIGNPIAHSKSPEIHAQFAAQTGQSLHYDRLLVPLHGFKAAVQVFQRRGGRGANVT 61 D Y VIGNPIAHSKSP+IHA+FAAQT Q L YDRLL PL GF A+VQ F R G+G NVT Sbjct: 6 DHYAVIGNPIAHSKSPDIHARFAAQTQQDLKYDRLLAPLDGFLASVQEFIRNDGKGLNVT 65 Query: 62 VPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMVNAGQALAGRR 121 VPFKLEA+A+A +L+ERAR AGAVNTLKFE G +LGDNTDG GLVTDI+ NAG A+AG+ Sbjct: 66 VPFKLEAYAMASRLSERARAAGAVNTLKFENGEMLGDNTDGVGLVTDIVRNAGVAVAGKT 125 Query: 122 VLLLGAGGASRGALLPLLQQQPAELVIVNRTQAKADELARQFREFGPVRSAAYAELEGVF 181 VLLLGAGGA+RG +LPLL ++PA LVI NRT +KA +LA +F + + + L+ F Sbjct: 126 VLLLGAGGAARGVILPLLHEKPARLVIANRTHSKALDLAERFAPQPTLEVSDFGALDDAF 185 Query: 182 DVIVNATSASLSDDLPPLPVSVYGSETLAYDMMYGRQPTVFMQSAQQHGASVRDGLGMLV 241 D+++NAT+ASL+ ++PP+ V+ TLAYDMMYG PT FMQ A +HGA+VRDGLGMLV Sbjct: 186 DIVINATAASLASEVPPISPRVFAKRTLAYDMMYGAAPTPFMQFAAEHGATVRDGLGMLV 245 Query: 242 EQAAEAFQLWRGVRPATAEVFASLRQQL 269 EQAAE+F +WR VRP TA VF LR +L Sbjct: 246 EQAAESFYVWRNVRPETAAVFKELRDKL 273 >ref|YP_001100991.1| dehydroshikimate reductase [Herminiimonas arsenicoxydans] sp|A4G8N3|AROE_HERAR RecName: Full=Shikimate dehydrogenase emb|CAL62870.1| shikimate dehydrogenase [Herminiimonas arsenicoxydans] Length = 273 Score = 331 bits (848), Expect = 9e-89, Method: Composition-based stats. Identities = 174/268 (64%), Positives = 211/268 (78%) Query: 2 DEYVVIGNPIAHSKSPEIHAQFAAQTGQSLHYDRLLVPLHGFKAAVQVFQRRGGRGANVT 61 D Y VIGNPIAHSKSP+IHA+FAAQT Q + Y+ LL PL GF A VQ F R GG+G NVT Sbjct: 6 DRYAVIGNPIAHSKSPDIHARFAAQTQQDMRYEPLLAPLDGFLATVQDFVRNGGKGVNVT 65 Query: 62 VPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMVNAGQALAGRR 121 VPFKLEA+ALA LTERAR AGAVNTLKF+G +LGDNTDG GLV+DI+ NA +A + Sbjct: 66 VPFKLEAYALATTLTERARAAGAVNTLKFDGADMLGDNTDGFGLVSDIVRNAKVEIANKS 125 Query: 122 VLLLGAGGASRGALLPLLQQQPAELVIVNRTQAKADELARQFREFGPVRSAAYAELEGVF 181 VLLLGAGGA+RG LLPLL +QPA LV+ NRT +KA +LA +F ++ + +A+L+ F Sbjct: 126 VLLLGAGGAARGVLLPLLHEQPARLVLANRTHSKALDLAHRFAAQPRLKVSTFADLDDSF 185 Query: 182 DVIVNATSASLSDDLPPLPVSVYGSETLAYDMMYGRQPTVFMQSAQQHGASVRDGLGMLV 241 D+++NAT+ASL+ ++PP+ V+ + TLAYDMMYG QPT FM+ A QHGA+VRDGLGMLV Sbjct: 186 DIVINATAASLASEVPPISPRVFTAHTLAYDMMYGAQPTAFMRFAAQHGATVRDGLGMLV 245 Query: 242 EQAAEAFQLWRGVRPATAEVFASLRQQL 269 EQAAE+F LWRGVRP TA VFA LR QL Sbjct: 246 EQAAESFYLWRGVRPETAAVFAELRAQL 273 >ref|YP_004751444.1| shikimate 5-dehydrogenase I alpha [Collimonas fungivorans Ter331] gb|AEK60621.1| Shikimate 5-dehydrogenase I alpha [Collimonas fungivorans Ter331] Length = 278 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 184/270 (68%), Positives = 216/270 (80%), Gaps = 4/270 (1%) Query: 4 YVVIGNPIAHSKSPEIHAQFAAQTGQSLHYDRLLVPLHGFKAAVQVFQRRGGRGANVTVP 63 YVVIGNPIAHSKSP+IHA FAA+TGQ + Y+RLL PL GF A VQ F +GGRGANVTVP Sbjct: 9 YVVIGNPIAHSKSPDIHAHFAAETGQDMRYERLLAPLDGFVATVQEFIGQGGRGANVTVP 68 Query: 64 FKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMVNAGQALAGRRVL 123 FKLEA+ALA+ LT RA+ AGAVNTLKF+GG ILGDNTDG GLVTDI NAG LA +++L Sbjct: 69 FKLEAYALANSLTARAQAAGAVNTLKFDGGDILGDNTDGVGLVTDIAHNAGFDLAHKKIL 128 Query: 124 LLGAGGASRGALLPLLQQQPAELVIVNRTQAKADELARQFREF---GPVRSA-AYAELEG 179 LLGAGGA+RG LLPLL++QPA+L I NRT AKA +L +QF+ + G + SA +AE Sbjct: 129 LLGAGGAARGVLLPLLERQPAQLTIANRTAAKAQQLVQQFQPYSGAGCILSACGFAEATQ 188 Query: 180 VFDVIVNATSASLSDDLPPLPVSVYGSETLAYDMMYGRQPTVFMQSAQQHGASVRDGLGM 239 +D+++NATSASL +LPPL SV+G TLAYDMMYG QPT+FMQ A HGA VRDGLGM Sbjct: 189 QYDLVINATSASLQAELPPLAASVFGPATLAYDMMYGPQPTIFMQFAASHGARVRDGLGM 248 Query: 240 LVEQAAEAFQLWRGVRPATAEVFASLRQQL 269 LVEQAAE+F +WRGVRP T VFA+LR QL Sbjct: 249 LVEQAAESFFIWRGVRPRTDAVFAALRAQL 278 >ref|YP_411238.1| shikimate 5-dehydrogenase [Nitrosospira multiformis ATCC 25196] gb|ABB73846.1| shikimate dehydrogenase [Nitrosospira multiformis ATCC 25196] Length = 277 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 168/270 (62%), Positives = 199/270 (73%), Gaps = 2/270 (0%) Query: 2 DEYVVIGNPIAHSKSPEIHAQFAAQTGQSLHYDRLLVPLHGFKAAVQVFQRRGGRGANVT 61 D Y VIGNP+AHSKSP IHA FA Q+GQ + Y+ +L PL GF V F++RGG+GANVT Sbjct: 5 DLYAVIGNPVAHSKSPLIHAGFARQSGQDVRYEAILAPLDGFVETVAAFRQRGGKGANVT 64 Query: 62 VPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMVNAGQALAGRR 121 VPFKLEAH L+ LTERA+ AGAVNTL F ILGDNTDGAGLV D+ VN G AL RR Sbjct: 65 VPFKLEAHTLSSCLTERAKAAGAVNTLVFGADDILGDNTDGAGLVRDVAVNLGYALDDRR 124 Query: 122 VLLLGAGGASRGALLPLLQQQPAELVIVNRTQAKADELARQFREFGPVRSAAYAELEGV- 180 VLL+GAGGA+RG + PLL+ +PA LVI NRT KAD+L R F G V SAAY +L G Sbjct: 125 VLLMGAGGAARGVIRPLLEHEPAALVIANRTPQKADDLQRLFASSGNVLSAAYEDLRGQE 184 Query: 181 FDVIVNATSASLSDDLPPLPVSVYGSETLAYDMMYGRQPTVFMQSAQQHGAS-VRDGLGM 239 FD+++NATSASL DLPPLP ++ +LAYDMMYG+ T F+Q AQQ GA+ + DG+GM Sbjct: 185 FDLVINATSASLQGDLPPLPKGIFAGASLAYDMMYGKGLTSFLQFAQQQGAARLADGIGM 244 Query: 240 LVEQAAEAFQLWRGVRPATAEVFASLRQQL 269 LVEQAAE+F LWRG+RP T V LR L Sbjct: 245 LVEQAAESFFLWRGIRPETEPVIGMLRSSL 274