BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0710.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773837.1| hypothetical protein Hsero_0404 [Herbaspiril...   207   6e-52
ref|YP_002980813.1| 17 kDa surface antigen [Ralstonia pickettii ...    75   4e-12
ref|ZP_07675773.1| 17 kDa surface antigen [Ralstonia sp. 5_7_47F...    74   1e-11
ref|YP_003753118.1| outer-membrane lipoprotein transmembrane [Ra...    72   3e-11
emb|CCA83171.1| putative outer-membrane lipoprotein transmembran...    71   5e-11

>ref|YP_003773837.1| hypothetical protein Hsero_0404 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61929.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  207 bits (526), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 137/156 (87%), Positives = 148/156 (94%)

Query: 16  MSVRHHYISLAVISASFAGLLIGCASPQQAPYGAAPTSQNYERVASYSGTGVVEAIEVTH 75
           MSVRHHY SLA++S SFAGLLIGCASPQQ PYGA P SQNY+RVASY+GTGVVEAIEVTH
Sbjct: 1   MSVRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTH 60

Query: 76  KESSGVAGAVVGGVAGGLLGNAVGGGTGRVLATVAGAAGGAYAGNQVERNNSAGRQVYNI 135
           KES+GVAG VVGGVAGGL+GNA+GGGTGRVLATVAGAAGGAYAGN+++RNNS GRQVYNI
Sbjct: 61  KESNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNI 120

Query: 136 RVRMSDGSLQTFAQEDNTDFRVGDRVRLDNGRISRY 171
           RVRM DGS+QTFAQEDNTDFRVGDRVRLDNGRISRY
Sbjct: 121 RVRMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY 156


>ref|YP_002980813.1| 17 kDa surface antigen [Ralstonia pickettii 12D]
 gb|ACS62141.1| 17 kDa surface antigen [Ralstonia pickettii 12D]
          Length = 168

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 88/155 (56%), Gaps = 16/155 (10%)

Query: 27  VISASFAGL--LIGCASPQQAPYGAAPTSQN---YERVASYSGT--------GVVEAIEV 73
           +I+A   GL  L GCA+P          SQ    Y +  +YSG         G VE+I+ 
Sbjct: 7   LIAAGVVGLTVLAGCAAPGYGGGYNGGYSQQPPAYGQQPAYSGQPQQTGALYGRVESIQP 66

Query: 74  THK--ESSGVAGAVVGGVAGGLLGNAVGGGTGRVLATVAGAAGGAYAGNQVERNNSAGRQ 131
                 S G+ G ++GGVAGG+LG+ VGGGTG  +AT+ GAA GAYAGNQVE+   AG Q
Sbjct: 67  MQAPANSPGILGTIIGGVAGGILGHQVGGGTGNTVATIGGAALGAYAGNQVEQRAGAGGQ 126

Query: 132 -VYNIRVRMSDGSLQTFAQEDNTDFRVGDRVRLDN 165
            VY I VR+ DG + T  Q +  + RVGDR  + N
Sbjct: 127 TVYRISVRLDDGRVATVTQRNPNNLRVGDRAMVAN 161


>ref|ZP_07675773.1| 17 kDa surface antigen [Ralstonia sp. 5_7_47FAA]
 gb|EFP65760.1| 17 kDa surface antigen [Ralstonia sp. 5_7_47FAA]
          Length = 168

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 68/164 (41%), Positives = 89/164 (54%), Gaps = 17/164 (10%)

Query: 16  MSVRHHYISLAVISASFAGLLIGCASPQQAPYGAAPTSQN---YERVASYSGT------- 65
           M  +H  I L V   +   +L GCA+P          SQ    Y +  +Y G        
Sbjct: 1   MKSKHILIGLGVAGLT---VLAGCAAPGYGGGYNGGYSQQPPAYGQQPAYGGQPQQTGAL 57

Query: 66  -GVVEAIEVTHK--ESSGVAGAVVGGVAGGLLGNAVGGGTGRVLATVAGAAGGAYAGNQV 122
            G VE+I+       S G+ G ++GGVAGG+LG+ VGGGTG  +AT+ GAA GAYAGNQV
Sbjct: 58  YGRVESIQPMQAPANSPGILGTIIGGVAGGILGHQVGGGTGNTVATIGGAALGAYAGNQV 117

Query: 123 ERNNSAGRQ-VYNIRVRMSDGSLQTFAQEDNTDFRVGDRVRLDN 165
           E+   AG Q VY I VR+ DG + T  Q +  + RVGDR  + N
Sbjct: 118 EQRAGAGGQTVYRISVRLDDGRVATVTQRNPNNLRVGDRAMVAN 161


>ref|YP_003753118.1| outer-membrane lipoprotein transmembrane [Ralstonia solanacearum
           PSI07]
 emb|CBJ51851.1| putative outer-membrane lipoprotein transmembrane [Ralstonia
           solanacearum PSI07]
          Length = 166

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 66  GVVEAIEVTHK--ESSGVAGAVVGGVAGGLLGNAVGGGTGRVLATVAGAAGGAYAGNQVE 123
           G VE+IE       SSG+ G ++GGVAGG+LG+ +GGGTG  +AT+ GAA GA AGNQVE
Sbjct: 57  GRVESIEPMQAPANSSGILGTIIGGVAGGVLGHQIGGGTGNTVATIGGAALGALAGNQVE 116

Query: 124 RNNSAGRQ-VYNIRVRMSDGSLQTFAQEDNTDFRVGDRVRLDN 165
           R  SAG Q VY + VR+ DG + T  Q +  + RVGDR  + N
Sbjct: 117 RAASAGGQTVYRVTVRLDDGRVATVTQRNPNNLRVGDRAMVAN 159


>emb|CCA83171.1| putative outer-membrane lipoprotein transmembrane [blood disease
           bacterium R229]
          Length = 166

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 66  GVVEAIEVTHK--ESSGVAGAVVGGVAGGLLGNAVGGGTGRVLATVAGAAGGAYAGNQVE 123
           G VE+IE       S G+ G ++GGVAGG+LG+ +GGGTG  +AT+ GAA GA AGNQVE
Sbjct: 57  GRVESIEPMQAPANSPGILGTIIGGVAGGVLGHQIGGGTGNTVATIGGAALGALAGNQVE 116

Query: 124 RNNSAGRQ-VYNIRVRMSDGSLQTFAQEDNTDFRVGDRVRLDN 165
           R  SAG Q VY + VR+ DG + T  Q +  + RVGDR  + N
Sbjct: 117 RAASAGGQTVYRVTVRLDDGRVATVTQRNPNNLRVGDRAMVAN 159