BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0702.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773844.1| transcription regulator protein [Herbaspiril...   120   1e-25
gb|EFV85961.1| hypothetical protein HMPREF0005_01323 [Achromobac...    90   1e-16
ref|ZP_08406441.1| putative transcription regulator protein [Hyl...    89   2e-16
gb|AEG71382.1| hypothetical protein RSPO_m00744 [Ralstonia solan...    89   3e-16
ref|YP_003748560.1| DNA-binding transcriptional regulator [Ralst...    88   4e-16

>ref|YP_003773844.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61936.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/89 (77%), Positives = 76/89 (85%)

Query: 1  MSEFPVRTGHQLPQLLQAYRKQSGMTQTEVARRLGVTQQNLSSLERNADKVSADRLVELL 60
          MSEFPVRTG QLP+LLQAYRKQSG+TQ+EVARRLGVTQQNLSSLERNADKVSA+RL+ELL
Sbjct: 1  MSEFPVRTGRQLPELLQAYRKQSGLTQSEVARRLGVTQQNLSSLERNADKVSAERLIELL 60

Query: 61 NILGVELVLRKADDTLPKSDIPPSDDASW 89
          NILGVELVLRK +     +   PSD   W
Sbjct: 61 NILGVELVLRKIEAAPSDALASPSDTPQW 89


>gb|EFV85961.1| hypothetical protein HMPREF0005_01323 [Achromobacter xylosoxidans
          C54]
          Length = 86

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/85 (57%), Positives = 66/85 (77%)

Query: 1  MSEFPVRTGHQLPQLLQAYRKQSGMTQTEVARRLGVTQQNLSSLERNADKVSADRLVELL 60
          M+++ VRT  QLP LLQA+RK++G+TQ   A RLG+TQQ LS+LERNA+KV ADRL++LL
Sbjct: 1  MADYTVRTAEQLPALLQAFRKKAGLTQAAAALRLGITQQTLSALERNAEKVGADRLLQLL 60

Query: 61 NILGVELVLRKADDTLPKSDIPPSD 85
          +ILGVELVLR+ ++ L    +   D
Sbjct: 61 SILGVELVLREPEEPLASRQVSDQD 85


>ref|ZP_08406441.1| putative transcription regulator protein [Hylemonella gracilis
          ATCC 19624]
 gb|EGI76454.1| putative transcription regulator protein [Hylemonella gracilis
          ATCC 19624]
          Length = 88

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/70 (68%), Positives = 58/70 (82%)

Query: 1  MSEFPVRTGHQLPQLLQAYRKQSGMTQTEVARRLGVTQQNLSSLERNADKVSADRLVELL 60
          M+++PVRT  QLP LLQA+RKQ+G+TQ E A RLGVTQQ  S+LERNA+ V   RL++LL
Sbjct: 1  MNDYPVRTPDQLPTLLQAFRKQAGLTQNEAALRLGVTQQTYSALERNAETVGTGRLLKLL 60

Query: 61 NILGVELVLR 70
          NILGVELVLR
Sbjct: 61 NILGVELVLR 70


>gb|AEG71382.1| hypothetical protein RSPO_m00744 [Ralstonia solanacearum Po82]
          Length = 108

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 65/89 (73%), Gaps = 1/89 (1%)

Query: 1   MSEFPVRTGHQLPQLLQAYRKQSGMTQTEVARRLGVTQQNLSSLERNADKVSADRLVELL 60
           M+EF VRT  QLP +L+ +RKQ+G++Q E+A R+GV QQ LS+LERNA+ VSA RL+ LL
Sbjct: 21  MNEFIVRTPEQLPAILKGFRKQAGLSQAELAARMGVRQQTLSALERNAENVSAGRLMRLL 80

Query: 61  NILGVELVLRKADDTLPKSDIPPSDDASW 89
           ++LGVELVLRK  D   +   P SD   W
Sbjct: 81  SVLGVELVLRKP-DAAGEPGRPASDQPQW 108


>ref|YP_003748560.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
 emb|CBJ54176.1| DNA-binding transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
          Length = 88

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 1  MSEFPVRTGHQLPQLLQAYRKQSGMTQTEVARRLGVTQQNLSSLERNADKVSADRLVELL 60
          M+EF VRT  QLP +L+ +RKQ+G++Q E+A R+G+ QQ LS+LERNA+ VSA RL+ LL
Sbjct: 1  MNEFIVRTPEQLPAILKGFRKQAGLSQAELATRMGMRQQTLSALERNAENVSAARLMRLL 60

Query: 61 NILGVELVLRKADDTLPKSDIPPSDDASW 89
          ++LGVELVLRK DD   +   P SD   W
Sbjct: 61 SVLGVELVLRKPDDA-GEPGRPASDQPQW 88