BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0700.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like p... 574 e-162 ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas f... 547 e-154 ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacter... 526 e-147 ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacterac... 508 e-142 ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimona... 503 e-140 >ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ61938.1| tRNA-dihydrouridine synthase protein or NifR3-like protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 294/321 (91%), Positives = 306/321 (95%) Query: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINHDGEMEPKAVQIAGADP 60 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLW SEKTSRRINHDGEMEPKAVQIAGADP Sbjct: 17 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINHDGEMEPKAVQIAGADP 76 Query: 61 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 120 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV Sbjct: 77 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 136 Query: 121 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKMP 180 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVK+P Sbjct: 137 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKIP 196 Query: 181 VVANGDITTPEKAREVLRLTGADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVAEVQ 240 VVANGDITTPEKAR+VL LT ADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLV+EV+ Sbjct: 197 VVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVSEVE 256 Query: 241 ELMLEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDF 300 +LM EHLQAHYAFYG+YLGVRTARKHIGWYVRDLP GEQFR+ MNR+ED Q AVR F Sbjct: 257 QLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSMNRIEDCAQQLQAVRQF 316 Query: 301 FESQAAYGERLQYGIAGEALA 321 F SQAA+GERLQYG+A + +A Sbjct: 317 FASQAAFGERLQYGLAVDEVA 337 >ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331] gb|AEK63778.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331] Length = 325 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 268/322 (83%), Positives = 295/322 (91%) Query: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINHDGEMEPKAVQIAGADP 60 MAGVTDRPFRQLCK+LGAGYAVSEMAAS+PRLW +EKTSRRINHDGEMEP+AVQIAGADP Sbjct: 4 MAGVTDRPFRQLCKELGAGYAVSEMAASNPRLWQTEKTSRRINHDGEMEPRAVQIAGADP 63 Query: 61 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 120 +MLA+CAKYNV+ GAQIIDINMGCPVKKVCNSWCGSALLQDE+LVA+IL+AVVSAVDVPV Sbjct: 64 LMLAECAKYNVDHGAQIIDINMGCPVKKVCNSWCGSALLQDEQLVAKILEAVVSAVDVPV 123 Query: 121 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKMP 180 TLKFRTGW+R NKNAL IA A+A+GIAMLTLHGRTRADGYSG+AEY+TIAAVKAAV +P Sbjct: 124 TLKFRTGWDRLNKNALNIARLAQASGIAMLTLHGRTRADGYSGDAEYQTIAAVKAAVTIP 183 Query: 181 VVANGDITTPEKAREVLRLTGADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVAEVQ 240 VVANGDI TPEKAR+VL T ADA+MVGRAAQGRPWIFREI+H+LRTGE+LPAPLV EVQ Sbjct: 184 VVANGDIATPEKARQVLEYTKADAIMVGRAAQGRPWIFREIEHYLRTGEYLPAPLVTEVQ 243 Query: 241 ELMLEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDF 300 +LM EHL+AHY FYG+YLGVRTARKHIGWYVRDLP GE FRQRMN LED Q AV F Sbjct: 244 QLMDEHLRAHYGFYGDYLGVRTARKHIGWYVRDLPGGEAFRQRMNLLEDCGQQLAAVNSF 303 Query: 301 FESQAAYGERLQYGIAGEALAA 322 FESQ A+GERLQYG+A + LAA Sbjct: 304 FESQFAFGERLQYGVAEQMLAA 325 >ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille] gb|ABR89628.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille] Length = 338 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 257/322 (79%), Positives = 290/322 (90%) Query: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINHDGEMEPKAVQIAGADP 60 MAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW S+K++RR NHDGE+EPKAVQIAGADP Sbjct: 17 MAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWASDKSTRRTNHDGEVEPKAVQIAGADP 76 Query: 61 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 120 V+LA+CAK+NV+RGAQIIDINMGCPVKKVCNSWCGSALLQ E LVA IL+AVV++V+VPV Sbjct: 77 VLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILEAVVASVNVPV 136 Query: 121 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKMP 180 TLKFRTGW+RA+KNAL IA AE +GIAMLTLHGRTRADGYSG+AEYETI AVKAAV +P Sbjct: 137 TLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGDAEYETITAVKAAVSIP 196 Query: 181 VVANGDITTPEKAREVLRLTGADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVAEVQ 240 VVANGDITTPEKAR VL +TGADA+M+GRAAQGRPWIFREI+H+LRTG +LPAP++AEV+ Sbjct: 197 VVANGDITTPEKARYVLDVTGADAIMIGRAAQGRPWIFREIEHYLRTGTYLPAPMIAEVR 256 Query: 241 ELMLEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDF 300 LM EHL+AHYAFYGEYLGVRTARKHIGWYVR+L GE FRQ+MN+LED + Q AV F Sbjct: 257 TLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRELVGGEAFRQQMNKLEDCEQQLAAVNTF 316 Query: 301 FESQAAYGERLQYGIAGEALAA 322 FE Q A+GERLQY E LAA Sbjct: 317 FELQLAHGERLQYRPTAEKLAA 338 >ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF33185.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium IMCC9480] Length = 348 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 260/313 (83%), Positives = 282/313 (90%) Query: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINHDGEMEPKAVQIAGADP 60 MAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW +EKTSRRINHDGEM P+AVQIAGADP Sbjct: 27 MAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWQTEKTSRRINHDGEMAPRAVQIAGADP 86 Query: 61 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 120 MLADCA++NVERGAQ+IDINMGCPVKKVCNSWCGSALLQDE LV +ILDAVV+AVDVPV Sbjct: 87 AMLADCARFNVERGAQVIDINMGCPVKKVCNSWCGSALLQDERLVGQILDAVVAAVDVPV 146 Query: 121 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKMP 180 TLKFRTGW+R +KNAL IA A++AGIAMLTLHGRTRADGY+G AEYETIAAVKAAV +P Sbjct: 147 TLKFRTGWDRQHKNALNIARLAQSAGIAMLTLHGRTRADGYNGAAEYETIAAVKAAVTIP 206 Query: 181 VVANGDITTPEKAREVLRLTGADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVAEVQ 240 VVANGDITTPEKAR VL +TGADA+M+GRAAQGRPWIFRE+ HFL+TG HL APLV+EV Sbjct: 207 VVANGDITTPEKARHVLAVTGADAIMIGRAAQGRPWIFREVVHFLKTGTHLAAPLVSEVA 266 Query: 241 ELMLEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDF 300 LM EHL+AHYAFYGEYLGVRTARKHIGWYVRDL GE FRQ MN LED + Q AV DF Sbjct: 267 LLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRDLAGGEDFRQSMNLLEDCEQQLAAVNDF 326 Query: 301 FESQAAYGERLQY 313 FESQ YGERLQY Sbjct: 327 FESQIRYGERLQY 339 >ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans] emb|CAL60481.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans] Length = 322 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 259/322 (80%), Positives = 287/322 (89%) Query: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINHDGEMEPKAVQIAGADP 60 MAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW ++K++RR NHDGE+EPKAVQIAGADP Sbjct: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWATDKSTRRTNHDGEVEPKAVQIAGADP 60 Query: 61 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 120 +MLA+CAK+NV+RGAQIIDINMGCPVKKVCNSWCGSALLQ E LVA IL AVV+AVDVPV Sbjct: 61 LMLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILQAVVAAVDVPV 120 Query: 121 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKMP 180 TLKFRTGW+RA+KNAL IA AE +GIAMLTLHGRTRADGYSGEAEYE IAAVKAAV +P Sbjct: 121 TLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGEAEYEMIAAVKAAVSIP 180 Query: 181 VVANGDITTPEKAREVLRLTGADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVAEVQ 240 VVANGDITTPEKA+ VL TGADA+M+GRAAQGRPWIFREI H+LRTG HLPAPL++EV+ Sbjct: 181 VVANGDITTPEKAKFVLEATGADAIMIGRAAQGRPWIFREIVHYLRTGTHLPAPLISEVR 240 Query: 241 ELMLEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPEGEQFRQRMNRLEDTQLQWNAVRDF 300 LM EHL+AHYAFYGEYLGVRTARKHIGWYVR+L +GE FRQ+MNRLED Q AV +F Sbjct: 241 TLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRELIDGEAFRQQMNRLEDCAQQLAAVNEF 300 Query: 301 FESQAAYGERLQYGIAGEALAA 322 FE Q +GERLQY E LAA Sbjct: 301 FELQLTHGERLQYRPTEEKLAA 322