BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0699.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773847.1| factor-for-inversion-stimulation transcripti...   128   3e-28
ref|YP_001351997.1| Fis family transcriptional regulator [Janthi...   125   3e-27
ref|YP_004754600.1| macromolecule metabolism; basic proteins [Co...   121   4e-26
ref|YP_001098611.1| DNA-binding protein fis [Herminiimonas arsen...   115   2e-24
ref|ZP_08273354.1| DNA-binding protein Fis [Oxalobacteraceae bac...   113   1e-23

>ref|YP_003773847.1| factor-for-inversion-stimulation transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ61939.1| factor-for-inversion-stimulation transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 77

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/77 (89%), Positives = 75/77 (97%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARAEGNQSQAAEIL 60
          MSKESIEDVV+KSL+KYF+DLGEQLP+NVYDMV+ TVEKP+FE VMARAEGNQSQAAEIL
Sbjct: 1  MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77


>ref|YP_001351997.1| Fis family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89168.1| transcriptional regulator, Fis family [Janthinobacterium sp.
           Marseille]
          Length = 126

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/77 (80%), Positives = 72/77 (93%)

Query: 1   MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARAEGNQSQAAEIL 60
           MSK++I++VV+KSL+KYFKDLGEQ+PSNVY+MVV TVEKPI EAVM RAEGNQS AA++L
Sbjct: 50  MSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 109

Query: 61  GINRNTLRKKLQQHGLL 77
           GINRNTLRKKLQQH LL
Sbjct: 110 GINRNTLRKKLQQHDLL 126


>ref|YP_004754600.1| macromolecule metabolism; basic proteins [Collimonas fungivorans
          Ter331]
 gb|AEK63777.1| macromolecule metabolism; basic proteins [Collimonas fungivorans
          Ter331]
          Length = 77

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/77 (84%), Positives = 73/77 (94%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARAEGNQSQAAEIL 60
          MSKESI+DVV++SL+KYFKDLGEQ PSNVYDMV+ TVEKP+ EAV+ARAEGNQS AAE+L
Sbjct: 1  MSKESIQDVVKQSLEKYFKDLGEQPPSNVYDMVISTVEKPVLEAVIARAEGNQSHAAEML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77


>ref|YP_001098611.1| DNA-binding protein fis [Herminiimonas arsenicoxydans]
 emb|CAL60482.1| DNA-binding protein fis (Factor-for-inversion stimulation
          protein) (HIN recombinational enhancer binding protein)
          [Herminiimonas arsenicoxydans]
          Length = 77

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/77 (79%), Positives = 72/77 (93%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARAEGNQSQAAEIL 60
          MSK++I+DVV+KSL+KYF+DLGEQ+PSNVY+MVV TVEKPI EAVM RAEGNQS AA++L
Sbjct: 1  MSKDNIQDVVKKSLEKYFRDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQH +L
Sbjct: 61 GINRNTLRKKLQQHDML 77


>ref|ZP_08273354.1| DNA-binding protein Fis [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33186.1| DNA-binding protein Fis [Oxalobacteraceae bacterium IMCC9480]
          Length = 77

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/77 (80%), Positives = 70/77 (90%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARAEGNQSQAAEIL 60
          MSKESI++VV+KSL+KYF+DLGEQ P+NVYDMVV+TVEKPI E VMARA GNQS AAE+L
Sbjct: 1  MSKESIQEVVKKSLEKYFRDLGEQHPTNVYDMVVVTVEKPILEVVMARAAGNQSLAAEML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQ H LL
Sbjct: 61 GINRNTLRKKLQLHSLL 77