BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0696.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkhold...   131   4e-29
ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ...   131   4e-29
ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholde...   100   1e-19
ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderi...    92   3e-17
ref|ZP_02908480.1| conserved hypothetical protein [Burkholderia ...    82   4e-14

>ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkholderia ambifaria MC40-6]
 gb|ACB63327.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 118

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 83/117 (70%)

Query: 1   MRNITWERFEAWVRKENGTNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDY 60
           M   TW  FE +VR+E G +PK  LT+   +  DLD+TGDDA++FM+ FF++F V  GD+
Sbjct: 1   MSQFTWNEFEDFVRREAGVSPKKILTKGHAVEGDLDITGDDAIEFMESFFDKFPVQVGDF 60

Query: 61  SFDRYFVAEGFSPLELLLLLVSKKKRASYDRPPVTLRMLHQAALDGRWNCARLEALP 117
            F+RYF  EGFS +E+  ++ S+K +A YD+ P+TL ML+QA LDG WN  RLE+LP
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKHQAKYDKVPLTLGMLYQAILDGEWNNQRLESLP 117


>ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT44070.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 118

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/117 (52%), Positives = 83/117 (70%)

Query: 1   MRNITWERFEAWVRKENGTNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDY 60
           M   TW   E +VR+E G +PK  LT+   +  DLD+TGDDAV+FM+ FF++F V  GD+
Sbjct: 1   MNQFTWNELEDFVRREAGVSPKEILTKGHAVEGDLDITGDDAVEFMESFFDKFPVQVGDF 60

Query: 61  SFDRYFVAEGFSPLELLLLLVSKKKRASYDRPPVTLRMLHQAALDGRWNCARLEALP 117
            F+RYF  EGFS +E+  ++ S+K+RA YD+ P+TL ML+QA LDG WN  RLE+LP
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKRRAKYDKVPLTLGMLYQAILDGEWNNQRLESLP 117


>ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
 gb|ACR29058.1| Hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
          Length = 113

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 73/115 (63%), Gaps = 4/115 (3%)

Query: 1   MRNITWERFEAWVRKENGTNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDY 60
           M +++WE  EA+VR E G  P  PLTRDT+L  DL +TGDDA DFM  FFE F +D GD+
Sbjct: 1   MADVSWEAIEAFVRAEVGLGPSKPLTRDTRLWEDLGMTGDDANDFMGCFFERFQIDPGDF 60

Query: 61  SFDRYFVAEGFSPL-ELLLLLVSKKKRASYDRPPVTLRMLHQAALDGRWNC-ARL 113
            F RYF+ EG   L  L    V +K +    R P+TL MLH AALD +W+  ARL
Sbjct: 61  DFHRYFLMEGEGGLYSLFRRWVLRKPKTR--REPITLGMLHLAALDRKWSSFARL 113


>ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderia ubonensis Bu]
          Length = 117

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 67/116 (57%)

Query: 1   MRNITWERFEAWVRKENGTNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDY 60
           M N+ W+  EA+VR E G     PL+  T+L  DL  TGD+A DFM  FFE FTVD GD+
Sbjct: 1   MENVRWDEIEAFVRSEAGLGKSAPLSAATRLWEDLGQTGDEANDFMGLFFERFTVDTGDF 60

Query: 61  SFDRYFVAEGFSPLELLLLLVSKKKRASYDRPPVTLRMLHQAALDGRWNCARLEAL 116
            F RYF+ EG   L  L      +K     R  +TL ML++AA++ +W+  RL  L
Sbjct: 61  DFHRYFLMEGEGLLYSLFQRWVLRKPHGLKRESITLAMLYRAAVEKKWDARRLAEL 116


>ref|ZP_02908480.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT40380.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 117

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 62/117 (52%)

Query: 1   MRNITWERFEAWVRKENGTNPKTPLTRDTQLNNDLDVTGDDAVDFMQHFFEEFTVDYGDY 60
           M  + W+  E +VR E G      L+  T+L  DL  TGD+A DFM  FFE F++D   +
Sbjct: 1   MEKVRWDEIEVFVRSEAGLGKSVRLSPVTRLWEDLGQTGDEADDFMGRFFERFSIDTAGF 60

Query: 61  SFDRYFVAEGFSPLELLLLLVSKKKRASYDRPPVTLRMLHQAALDGRWNCARLEALP 117
            F RYF+ EG      L      +K    +R  VTL MLH AA++ +W+  RL  LP
Sbjct: 61  DFHRYFLMEGEGMFYSLFQRWVLRKPHDLERESVTLAMLHCAAVERKWDAKRLTRLP 117