BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0695.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ...   135   2e-30
ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkhold...   130   5e-29
ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholde...    93   1e-17
ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderi...    86   2e-15
ref|YP_777563.1| hypothetical protein Bamb_5682 [Burkholderia am...    80   7e-14

>ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT44070.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 118

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 84/116 (72%)

Query: 1   MNDLTWEYVEAWIRQKHGTSPTKALGRATTLTGDMHLTGDEAADFIDRYFAAFSIDPGDY 60
           MN  TW  +E ++R++ G SP + L +   + GD+ +TGD+A +F++ +F  F +  GD+
Sbjct: 1   MNQFTWNELEDFVRREAGVSPKEILTKGHAVEGDLDITGDDAVEFMESFFDKFPVQVGDF 60

Query: 61  RFDRYFLGEGFNLIEVIHMALSKKKRAKYERTPLTLGMLYQAALDGKWNCARLEAL 116
            F+RYF GEGF+LIEV  M  S+K+RAKY++ PLTLGMLYQA LDG+WN  RLE+L
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKRRAKYDKVPLTLGMLYQAILDGEWNNQRLESL 116


>ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkholderia ambifaria MC40-6]
 gb|ACB63327.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 118

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 82/116 (70%)

Query: 1   MNDLTWEYVEAWIRQKHGTSPTKALGRATTLTGDMHLTGDEAADFIDRYFAAFSIDPGDY 60
           M+  TW   E ++R++ G SP K L +   + GD+ +TGD+A +F++ +F  F +  GD+
Sbjct: 1   MSQFTWNEFEDFVRREAGVSPKKILTKGHAVEGDLDITGDDAIEFMESFFDKFPVQVGDF 60

Query: 61  RFDRYFLGEGFNLIEVIHMALSKKKRAKYERTPLTLGMLYQAALDGKWNCARLEAL 116
            F+RYF GEGF+LIEV  M  S+K +AKY++ PLTLGMLYQA LDG+WN  RLE+L
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKHQAKYDKVPLTLGMLYQAILDGEWNNQRLESL 116


>ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
 gb|ACR29058.1| Hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
          Length = 113

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 1   MNDLTWEYVEAWIRQKHGTSPTKALGRATTLTGDMHLTGDEAADFIDRYFAAFSIDPGDY 60
           M D++WE +EA++R + G  P+K L R T L  D+ +TGD+A DF+  +F  F IDPGD+
Sbjct: 1   MADVSWEAIEAFVRAEVGLGPSKPLTRDTRLWEDLGMTGDDANDFMGCFFERFQIDPGDF 60

Query: 61  RFDRYFLGEGFNLIEVIHMALSKKKRAKYERTPLTLGMLYQAALDGKWNC-ARL 113
            F RYFL EG   +  +      +K  K  R P+TLGML+ AALD KW+  ARL
Sbjct: 61  DFHRYFLMEGEGGLYSLFRRWVLRK-PKTRREPITLGMLHLAALDRKWSSFARL 113


>ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderia ubonensis Bu]
          Length = 117

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 68/116 (58%)

Query: 1   MNDLTWEYVEAWIRQKHGTSPTKALGRATTLTGDMHLTGDEAADFIDRYFAAFSIDPGDY 60
           M ++ W+ +EA++R + G   +  L  AT L  D+  TGDEA DF+  +F  F++D GD+
Sbjct: 1   MENVRWDEIEAFVRSEAGLGKSAPLSAATRLWEDLGQTGDEANDFMGLFFERFTVDTGDF 60

Query: 61  RFDRYFLGEGFNLIEVIHMALSKKKRAKYERTPLTLGMLYQAALDGKWNCARLEAL 116
            F RYFL EG  L+  +      +K    +R  +TL MLY+AA++ KW+  RL  L
Sbjct: 61  DFHRYFLMEGEGLLYSLFQRWVLRKPHGLKRESITLAMLYRAAVEKKWDARRLAEL 116


>ref|YP_777563.1| hypothetical protein Bamb_5682 [Burkholderia ambifaria AMMD]
 gb|ABI91229.1| hypothetical protein Bamb_5682 [Burkholderia ambifaria AMMD]
          Length = 116

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 66/110 (60%)

Query: 6   WEYVEAWIRQKHGTSPTKALGRATTLTGDMHLTGDEAADFIDRYFAAFSIDPGDYRFDRY 65
           WE +EA++RQ+   S  + +   T+LT D+  TGD+A  F++R+FA F ++ GDY F RY
Sbjct: 7   WEALEAFVRQEAAVSSKRQITVDTSLTDDLGQTGDDADIFMERFFARFEVERGDYDFGRY 66

Query: 66  FLGEGFNLIEVIHMALSKKKRAKYERTPLTLGMLYQAALDGKWNCARLEA 115
           FL EG   +  +      +K   ++R  LT+GML +A   G W+ A +++
Sbjct: 67  FLMEGEGFLYHVVRKFILRKPHTFKRDALTVGMLCKAVSLGVWDSAAIKS 116