BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0694.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773849.1| hypothetical protein Hsero_0416 [Herbaspiril... 525 e-147 ref|YP_001792777.1| MerR family transcriptional regulator [Lepto... 250 3e-64 ref|YP_786109.1| MerR family transcriptional regulator [Bordetel... 185 8e-45 ref|YP_001888142.1| MerR family transcriptional regulator [Burkh... 179 5e-43 ref|YP_001858576.1| MerR family transcriptional regulator [Burkh... 176 5e-42 >ref|YP_003773849.1| hypothetical protein Hsero_0416 [Herbaspirillum seropedicae SmR1] gb|ADJ61941.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 305/334 (91%), Positives = 313/334 (93%), Gaps = 4/334 (1%) Query: 6 STSSPALAADKPAGEALRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEAD 65 STSSP P LRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEAD Sbjct: 12 STSSPEEKGPAP----LRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEAD 67 Query: 66 VRRLALIRQLTELGHAIGSLAGLDMDQLQQVAATHAELHAARPTPPEAVQGQWRLAVIGS 125 VRRLALIRQLTELGHAIGSLAGLDM+QLQQVAATHAELHA RPTPPEAVQG+WRLAVIGS Sbjct: 68 VRRLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAGRPTPPEAVQGRWRLAVIGS 127 Query: 126 TLAQRLDKPGLLQRLGRPLQLLGPFESIEQAAMALKREEVDALLLHEPQLHAGWLGALES 185 TLAQRLDKPGLLQRLGRPLQLLGPFE+IEQAAMALKREEVDALLLHEPQLHAGWLGALES Sbjct: 128 TLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLHAGWLGALES 187 Query: 186 SAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLAALSSPARDEE 245 SAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGL ALSSPAR+E Sbjct: 188 SAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLVALSSPAREEM 247 Query: 246 AGDKALPPRRWDDNELIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQ 305 A LPPRRW DN+LIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQ Sbjct: 248 AAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQ 307 Query: 306 LHQYLQQLTSESRQRFEAALTRIAIHEGMISENS 339 LHQYLQQLTSESRQRFE ALTRIA HEG+I+E + Sbjct: 308 LHQYLQQLTSESRQRFEMALTRIAEHEGLIAEGA 341 >ref|YP_001792777.1| MerR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB36012.1| transcriptional regulator, MerR family [Leptothrix cholodnii SP-6] Length = 349 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 165/331 (49%), Positives = 213/331 (64%), Gaps = 19/331 (5%) Query: 24 RTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEADVRRLALIRQLTELGHAIG 83 R+GAVARM+RMPVATLR+WERRY + SP+G RLYS ADV+RLAL++QLTELGH+IG Sbjct: 15 RSGAVARMIRMPVATLRIWERRYQVAAPATSPTGHRLYSAADVQRLALVKQLTELGHSIG 74 Query: 84 SLAGLDMDQLQQVAATHA-ELHAARPTPPEAVQGQWRLAVIGSTLAQRLDKPGLLQRLGR 142 S+AGLD + L+QVAATHA L AR P A WR+ V G L +RL +P L +RLGR Sbjct: 75 SIAGLDAEGLRQVAATHATTLAGARTLPAAAPVLPWRVVVAGGALLRRLQRPTLQRRLGR 134 Query: 143 PLQLLGPFESIEQAA---MALKREEVDALLLHEPQLHAGWLGALESSAPALSGLPMAVLY 199 PL ++ ++ A + VD LL+H LH G L L+++A A+ +AV Y Sbjct: 135 PLDIVAGVAHLDDLAELDLPPAGPRVDVLLVHASGLHEGDLADLQAAARAIGAARLAVFY 194 Query: 200 GFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLA--ALSSPARDEEAGDKA------- 250 GFAS A+ + AA G++LLR P+ D + WL GL A +PA E D A Sbjct: 195 GFASAAIGDAFAAAGVALLREPRDDAALGAWLGGLCGEAAQTPAAPAEPIDCAAPVTDPR 254 Query: 251 ------LPPRRWDDNELIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADA 304 +P RR+ D EL FA S+T+ACECPRH+AELLMQLS FE YSAQC +R+ ADA Sbjct: 255 LVALGPVPERRYSDAELADFAGLSSTIACECPRHLAELLMQLSHFEAYSAQCRDRSPADA 314 Query: 305 QLHQYLQQLTSESRQRFEAALTRIAIHEGMI 335 LH YL Q+ +R FE+AL R+A+ EG++ Sbjct: 315 VLHAYLGQVAGAARSLFESALERVAVIEGLV 345 >ref|YP_786109.1| MerR family transcriptional regulator [Bordetella avium 197N] emb|CAJ49198.1| MerR-family transcriptional regulator [Bordetella avium 197N] Length = 345 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 137/321 (42%), Positives = 186/321 (57%), Gaps = 7/321 (2%) Query: 19 GEALRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEADVRRLALIRQLTEL 78 G+ L R+GA AR+ +MPVATLR+WE+RY Q + +PSG RLY+ AD++RL L+R LT+ Sbjct: 12 GQTLFRSGAAARLAQMPVATLRIWEQRYQAVQPRTAPSGHRLYTPADIQRLQLLRALTQQ 71 Query: 79 GHAIGSLAGLDMDQLQQVAATHAELHAARPTPPEAVQGQWRLAVIGSTLAQRLDKPGLLQ 138 GHAIGSLA L ++ L+ +AA H AA + + RL V+G A RL +P + Sbjct: 72 GHAIGSLAPLGLEALEALAAQHTVGEAA--GKAQRARRPLRLVVVGPAFAARLARPAVAL 129 Query: 139 RLGRPLQLLGPFESIEQAAMALKREEVDALLLHEPQLHAGWLGALESSAPALSGLPMAVL 198 +LG P+QLL ES+++AA + D L+ P L + L L ++ AL +A + Sbjct: 130 QLGGPVQLLAVHESLQEAAQSALARPCDLLVWQTPGLLSENLDGLRAAQTALQAPSVAAV 189 Query: 199 YGFASEAVCETLAAVGISLLRAPQPDVVILQWL--RGLAALSSPARDEEAGDKAL---PP 253 Y F + A LA + LLR P D + WL GLA ++ A A P Sbjct: 190 YRFGNAAAKAALAREAVLLLREPPDDESLGAWLATAGLAPPAAARTAANAATTASTQPPA 249 Query: 254 RRWDDNELIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQLHQYLQQL 313 RR+DD +L A A ++T+ACECPRH+AELLM LS FE YS C + DA LH LQ L Sbjct: 250 RRYDDAQLTAIAGMASTLACECPRHIAELLMLLSSFEAYSGSCQLSSPQDAALHAELQAL 309 Query: 314 TSESRQRFEAALTRIAIHEGM 334 + SR FE AL R+ HEG+ Sbjct: 310 AARSRALFEEALERVTQHEGL 330 >ref|YP_001888142.1| MerR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18772.1| transcriptional regulator, MerR family [Burkholderia phytofirmans PsJN] Length = 342 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 171/323 (52%), Gaps = 21/323 (6%) Query: 24 RTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEADVRRLALIRQLTELGHAIG 83 R+G AR+ +MPV TLR+WERRY + + SGQRLY+E DVRRL LI+ L GHAIG Sbjct: 15 RSGEAARLAKMPVTTLRIWERRYGVVGPAKTASGQRLYTEDDVRRLTLIKLLVSRGHAIG 74 Query: 84 SLAGLDMDQLQQVAATHAELHAARPTPPEAVQGQWRLAVIGSTLAQRLDKPGLLQRLGRP 143 ++A LD +QLQ +AA P RLA++G +LAQR G+ Sbjct: 75 AIARLDREQLQFLAARSGRESGGATDLPLVESVNLRLALVGGSLAQRFRASGV------D 128 Query: 144 LQLLGPFESIEQAAMAL----------KREEVDALLLHEPQLHAGWLGALESSAPALSGL 193 L+ G E I A ++L + +DALL+ L + + A+ Sbjct: 129 LRPYGVNELITFADLSLAAAGGGTSGERGAPIDALLVSIDSLQEDIASQIIALGDAVRAK 188 Query: 194 PMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLAALSSPARDEEAGDKAL-- 251 +AV+YGF + E L G+ L R P Q L L E GD A+ Sbjct: 189 AIAVVYGFGTGPAAEILRVAGVRLYREPDSRTEFRQMLGDLC--ERVRSQERIGDDAVWS 246 Query: 252 -PPRRWDDNELIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQLHQYL 310 RR+DD EL A +S+T+ACECPRH+AEL+M+LS FERYS C +R+ DA LH+YL Sbjct: 247 RVRRRYDDRELEMIAGRSSTIACECPRHLAELVMKLSAFERYSDACTSRSAQDAALHRYL 306 Query: 311 QQLTSESRQRFEAALTRIAIHEG 333 +++ + EAAL R+A EG Sbjct: 307 GDVSNRACAMVEAALERVAREEG 329 >ref|YP_001858576.1| MerR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC71530.1| transcriptional regulator, MerR family [Burkholderia phymatum STM815] Length = 327 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 116/327 (35%), Positives = 173/327 (52%), Gaps = 9/327 (2%) Query: 15 DKPAGEALRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEADVRRLALIRQ 74 D P R GAVARM +PV TLR+WERRY + + SG RLYSEADVRR+A+I+ Sbjct: 6 DDPEVAPRYRIGAVARMANLPVGTLRIWERRYGVVAPPTTQSGHRLYSEADVRRVAMIKG 65 Query: 75 LTELGHAIGSLAGLDMDQLQQVAATHAELHAARPTPPEAVQGQWRLAVIGSTLAQRLDK- 133 L + G++IGS+A L +L+++A H + P E G RL ++G+ LA + + Sbjct: 66 LVDRGYSIGSIATLQTGELERLAFMHVDKTPVSPLT-EGRPG-LRLRIVGAALASTIRQH 123 Query: 134 --PGLLQRLGRPLQLLGPFESIEQAAMALKREEVDALLLHEPQLHAGWLGALESSAPALS 191 + G P FE++ A + D L++H P LH + + + + + Sbjct: 124 LHAMHAELAGEP----KVFENMTAAFTERMNQPADVLIIHLPSLHTDDVERVLALSASTH 179 Query: 192 GLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLAALSSPARDEEAGDKAL 251 + V+Y FA+ L VG+ +R P + Q L ++ + + Sbjct: 180 AENIVVVYAFAAANTIALLERVGVRTIREPLDQPSVSQMLGDFQRKTATTAAQPDMREPA 239 Query: 252 PPRRWDDNELIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQLHQYLQ 311 P R + D L+A A+ STT+ACECP+H+A ++MQLS FE+YS CA+R ADA LH YL Sbjct: 240 PQRHYTDEALMAMAHASTTIACECPKHLANIIMQLSAFEQYSVSCASRTPADALLHVYLA 299 Query: 312 QLTSESRQRFEAALTRIAIHEGMISEN 338 ++ +R FE AL R+ E + EN Sbjct: 300 NISGRARAMFEHALLRLEREERWVLEN 326