BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0693.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspiri... 711 0.0 ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protei... 399 e-109 emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thio... 374 e-101 ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomona... 365 1e-98 ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella a... 327 2e-87 >ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 379/441 (85%), Positives = 393/441 (89%), Gaps = 2/441 (0%) Query: 1 MYRKHQFDLVLDTPSLEDAPAAAPATSAVVAAVPTPRPLALLPLLPTLAAARERIAAVRP 60 MYRKHQFDL+LDT E+A PA A+ +P LL LPTLAAARERIAAVRP Sbjct: 1 MYRKHQFDLLLDTVVAEEA--VEPAALVSSASPASPTSFDLLTPLPTLAAARERIAAVRP 58 Query: 61 GAYARTRNSLDGAVTGLSPYLTHGFVSLREVLAGVCSRQALDVQHKFVYELGWRAFYRYV 120 GAYARTRNSLDGAVTGLSPYLTHG VSLR+VLAGVC R L+VQHKFVYELGWRAFYRYV Sbjct: 59 GAYARTRNSLDGAVTGLSPYLTHGMVSLRDVLAGVCQRYPLEVQHKFVYELGWRAFYRYV 118 Query: 121 WARRGARIFDSLHAGPLPESAYARELPADIREAATGLPVIDQAVRTLYATGTLHNHARMW 180 W+RRGARIFDSLHAGPLPE+AYARELP DIR ATG+PVIDQAVRTLYATG LHNHARMW Sbjct: 119 WSRRGARIFDSLHAGPLPEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMW 178 Query: 181 LASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAP 240 LASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAP Sbjct: 179 LASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAP 238 Query: 241 AEWHSPGTVVDTSYEVLGEIALNPDPVAAEPAQRARERCKEPALLPVPPEHLGSLTPEAQ 300 +WHSPGT +D SYE LGE+AL PDPV AEP R RC+EPALL PP L P+AQ Sbjct: 239 PQWHSPGTALDVSYEALGELALQPDPVPAEPGGRRLVRCQEPALLAEPPSSLDVCAPDAQ 298 Query: 301 AVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRWEFVGSRMRELTSL 360 AVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRW FVGSRMRELTSL Sbjct: 299 AVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRWRFVGSRMRELTSL 358 Query: 361 RWHGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRR 420 RWHGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRR Sbjct: 359 RWHGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRR 418 Query: 421 STQGLQTAAQLLAAEGRRDER 441 STQGLQTAAQLLAAEGRRDER Sbjct: 419 STQGLQTAAQLLAAEGRRDER 439 >ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii SP-6] Length = 420 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 236/400 (59%), Positives = 274/400 (68%), Gaps = 10/400 (2%) Query: 44 LLPTLAAARERIAAVRPGAYARTRNSLDGAVTGLSPYLTHGFVSLREVLAGVCSRQALDV 103 L PT +AA RIA VRP AYARTRN LDGAVTGLSPYLTHG ++L EVLAGV R+ L+V Sbjct: 20 LPPTRSAALARIARVRPAAYARTRNHLDGAVTGLSPYLTHGLITLPEVLAGVLQRERLEV 79 Query: 104 QHKFVYELGWRAFYRYVWARRGARIFDSLHAGPLPESAYARELPADIREAATGLPVIDQA 163 +HK V+ELGWR F+R+ W G I SLH GP P+ A LPADIR+A TG+PVID+A Sbjct: 80 RHKLVFELGWREFFRHAWGHAGDAILQSLHTGPRPDETCAPVLPADIRQARTGVPVIDEA 139 Query: 164 VRTLYATGTLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTG 223 VRTLYATGTLHNHARMWLASYVVHLR VHWRAGADW+V HLLDGDLASNHLSWQWVAGTG Sbjct: 140 VRTLYATGTLHNHARMWLASYVVHLRHVHWRAGADWLVAHLLDGDLASNHLSWQWVAGTG 199 Query: 224 SHKPYLFNAENVAKYAPAEWHSPGTVVDTSYEVLGEIALNPDPVAAEPAQRARERCKEPA 283 SHKPYLFNA+NVA YAPA WHS GTV+D SYE L IA + P AA P +R E A Sbjct: 200 SHKPYLFNADNVACYAPAHWHSAGTVIDQSYEALDRIARSATPTAA-PGPASRAPMAETA 258 Query: 284 LLPVPPEHLGSLTPE---------AQAVAGRDVWLVHPWSLGELPATLGPETVVVGLYLS 334 P PP A+ + GR+VWLVHPW+L PA L V +G+YL Sbjct: 259 ATPEPPLLAAPPAGLGLRVPDAACAERLRGREVWLVHPWALRAPPADLPDGAVRIGVYLR 318 Query: 335 DFHLLWPWDQRRWEFVGSRMRELTSLRWHGDAASVGRALKAARSVRCQLDPHLAPWLPLW 394 + H WPW + RW +V + M +T+ RW DAA + AL A VR DPHL WL Sbjct: 319 EHHQAWPWPESRWRWVDTAMAAVTAQRWFVDAAGLANALAGAARVRSVDDPHLTRWLRPV 378 Query: 395 AQCQNPPALFPPVDKPCDLFTQWWRRSTQGLQTAAQLLAA 434 AQ P LFPPV + C+ F+QWW R+T+GL A +LL + Sbjct: 379 AQLDAAPTLFPPVARRCESFSQWWTRATRGLHHAEELLCS 418 >emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As] Length = 396 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 220/375 (58%), Positives = 261/375 (69%), Gaps = 8/375 (2%) Query: 46 PTLAAARERIAAVRPGAYARTRNSLDGAVTGLSPYLTHGFVSLREVLAGVCSRQALDVQH 105 PTLAAA+ R+AAVRP YAR+RN L G VT LSPYLTHGF+ LR+V+ + R L +Q Sbjct: 13 PTLAAAQRRLAAVRPADYARSRNHLQGHVTRLSPYLTHGFLGLRDVVQHLSMRHGLGLQD 72 Query: 106 KFVYELGWRAFYRYVWARRGARIFDSLHAGPLPESAYARELPADIREAATGLPVIDQAVR 165 K + ELGWRAF++ VW G+ I S H GPLP+ AYA LPAD+ E TG+PVIDQAVR Sbjct: 73 KLLQELGWRAFFQQVWRHEGSGILQSQHLGPLPDRAYAPALPADLCEGRTGVPVIDQAVR 132 Query: 166 TLYATGTLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSH 225 TLYATG LHNHARMWLASY VHLRKVHWRAGADWMV HLLDGDLASNHLSWQWVAGTGS Sbjct: 133 TLYATGYLHNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSS 192 Query: 226 KPYLFNAENVAKYAPAEWHSPGTVVDTSYEVLGEIALNPDPVAAEPAQRARERCKEPALL 285 KPYLFNA+NVAKYAPA WHSPGTV+D SYE L +A P + EP + EPAL Sbjct: 193 KPYLFNADNVAKYAPAAWHSPGTVIDASYERLDALARQPRDLGPEPGEFV--GVAEPALF 250 Query: 286 PVPPEHLGSLTPEAQAVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQR 345 PP+ G +A+AVA +DVWLVHPW+LG +P P V + +D+H WPW Sbjct: 251 SEPPDG-GFSQADARAVAAQDVWLVHPWALGPVPEGRLP----VAVCDADWHARWPWSAA 305 Query: 346 RWEFVGSRMRELTSLRWHGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFP 405 RW+FV +RM+ L +RW G AS+ ALKAARSV+ +PHL+ +A PPA Sbjct: 306 RWQFVAARMQALAPVRWFGTTASLLEALKAARSVQGWHNPHLSAAWSDFALATPPPAFSE 365 Query: 406 PVDKPCDLFTQWWRR 420 P + C F+ +W R Sbjct: 366 PTQR-CRSFSAYWSR 379 >ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12] Length = 396 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 218/376 (57%), Positives = 257/376 (68%), Gaps = 10/376 (2%) Query: 46 PTLAAARERIAAVRPGAYARTRNSLDGAVTGLSPYLTHGFVSLREVLAGVCSRQALDVQH 105 PTLAAA+ +AAVRP YAR+RN L+G VT LSPYLTHGF+ LR+V+ + R L +Q Sbjct: 13 PTLAAAQRSLAAVRPADYARSRNHLEGRVTRLSPYLTHGFLGLRDVVQHLSMRHGLGLQD 72 Query: 106 KFVYELGWRAFYRYVWARRGARIFDSLHAGPLPESAYARELPADIREAATGLPVIDQAVR 165 K + ELGWRAF++ VW G I S H GPLP+ AYA LPAD+RE T +PVIDQAVR Sbjct: 73 KLLQELGWRAFFQQVWRHEGKGILQSQHPGPLPDRAYAPALPADLREGRTDVPVIDQAVR 132 Query: 166 TLYATGTLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSH 225 TLYATG LHNHARMWLASY VHLRKVHWRAGADWMV HLLDGDLASNHLSWQWVAGTGS Sbjct: 133 TLYATGYLHNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSS 192 Query: 226 KPYLFNAENVAKYAPAEWHSPGTVVDTSYEVLGEIALNPDPVAAEPAQRARERCKEPALL 285 KPYLFNA+NVAKYAPA WHSPGTV+D SY+ L +A P + EP + EPAL Sbjct: 193 KPYLFNADNVAKYAPAAWHSPGTVIDASYDKLDALARQPRDLGPEPGEFV--GVAEPALF 250 Query: 286 PVPPEHLGSLTPEAQAVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQR 345 P G +A+AVA +DVWL+HPW+LG +P P V + +D+H WPW Sbjct: 251 SELPAG-GFSQADARAVAAQDVWLIHPWALGPVPEGRLP----VAVCDADWHARWPWSAA 305 Query: 346 RWEFVGSRMRELTSLRWHGDAASVGRALKAARSVRCQLDPHL-APWLPLWAQCQNPPALF 404 RW+FV +RM+ LT +RW G AAS+ ALKA RSV+ +PHL A W L PP F Sbjct: 306 RWQFVTARMQALTPVRWFGTAASLLAALKAVRSVQGWHNPHLSAAWSDL--ALATPPLAF 363 Query: 405 PPVDKPCDLFTQWWRR 420 C F+ +W R Sbjct: 364 AEPTPRCRSFSAYWSR 379 >ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N] Length = 407 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 209/392 (53%), Positives = 259/392 (66%), Gaps = 13/392 (3%) Query: 46 PTLAAARERIAAVRPGAYARTRNSLDGAVTGLSPYLTHGFVSLREVLAGVCSRQALD--- 102 PT AA R+AA P AYA TRN LDGAV+ LSPYLTHG +SL E+L R Sbjct: 12 PTREAALARVAAFDPAAYALTRNHLDGAVSRLSPYLTHGLLSLPELLGLNLQRDTQGFLN 71 Query: 103 -VQHKFVYELGWRAFYRYVWARRGARIFDSLHAGPLPESAYARELPADIREAATGLPVID 161 VQH++V ELGWRA++++VW RG IF SL GP P+ AYA E+P DI EA TGLPVID Sbjct: 72 AVQHRWVMELGWRAYFQHVWDARGDDIFASLRPGPRPDEAYATEMPPDICEARTGLPVID 131 Query: 162 QAVRTLYATGTLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAG 221 AVRTLYA+G LHNHAR+WLASYVVH R+VHWR ADW++GHLLDGDL SNHLSWQWVAG Sbjct: 132 LAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGSNHLSWQWVAG 191 Query: 222 TGSHKPYLFNAENVAKYAPAEWHSPGTVVDTSYEVLGEIA--LNPDPVAAEPAQRARERC 279 T S KPYLFNAENVA++AP W+SPGT +D YE L +A L P A+ A A Sbjct: 192 TASAKPYLFNAENVARFAPEAWYSPGTPIDAPYERLDAMARGLAPWTEASGGAGMA---- 247 Query: 280 KEPALLPVPPEHLGSLTPEAQAVAGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLL 339 P L PP P A+ V GR VWLVHPW+LGELP + + + VG + +HL Sbjct: 248 -PPGLTGHPPWLCKP--PPAEVVRGRSVWLVHPWALGELPDDMPADRLCVGWWPQPYHLR 304 Query: 340 WPWDQRRWEFVGSRMRELTSLRWHGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQN 399 WPW +RRW FV +RM + + +GD AS+ R L+ AR ++ +PH+ LP + + Sbjct: 305 WPWSERRWRFVATRMGAVAAYDCYGDGASLLRLLQGARDIQTLSNPHVRHLLPAAVRQRP 364 Query: 400 PPALFPPVDKPCDLFTQWWRRSTQGLQTAAQL 431 P LFP +++ C F+ WW+ STQG++ A L Sbjct: 365 APTLFPVLEQSCRSFSAWWKLSTQGIRRTADL 396