BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0692.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773851.1| hypothetical protein Hsero_0418 [Herbaspiril...   256   1e-66
ref|ZP_01916547.1| hypothetical protein LMED105_14355 [Limnobact...   145   1e-33
emb|CBA31424.1| hypothetical protein Csp_F37460 [Curvibacter put...   119   2e-25
ref|YP_001241262.1| hypothetical protein BBta_5381 [Bradyrhizobi...   118   3e-25
ref|ZP_08504917.1| hypothetical protein METUNv1_01966 [Methylove...   118   3e-25

>ref|YP_003773851.1| hypothetical protein Hsero_0418 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61943.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 134/137 (97%), Positives = 136/137 (99%)

Query: 1   MSDDSRTSKGELTVLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVGMTR 60
           MSDDSRTSKGELTVLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVG+TR
Sbjct: 1   MSDDSRTSKGELTVLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVGLTR 60

Query: 61  AQLLARFHVRREDGAVFSGAEAFVQLWATLPGWRWLARLARLPGMLWLMERSYRGFLRVR 120
           AQLLARFHVRREDGAVFSGAEAFVQLW TLPGWRWLARLARLPGMLWLMERSYRGFLR+R
Sbjct: 61  AQLLARFHVRREDGAVFSGAEAFVQLWQTLPGWRWLARLARLPGMLWLMERSYRGFLRLR 120

Query: 121 PAIQRWVVRLERRRGPC 137
           PAIQRWVVRLERRRGPC
Sbjct: 121 PAIQRWVVRLERRRGPC 137


>ref|ZP_01916547.1| hypothetical protein LMED105_14355 [Limnobacter sp. MED105]
 gb|EDM82203.1| hypothetical protein LMED105_14355 [Limnobacter sp. MED105]
          Length = 304

 Score =  145 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/123 (54%), Positives = 87/123 (70%), Gaps = 3/123 (2%)

Query: 14  VLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVGMTRAQLLARFHVRRED 73
           V +DG CP+CRREI +YQ I  D P+ + D+S+P  P   LP G ++ QL+ARFH R   
Sbjct: 17  VYFDGSCPMCRREIAVYQNITPDQPIAWVDVSKPDTP---LPQGQSKEQLMARFHTRTAQ 73

Query: 74  GAVFSGAEAFVQLWATLPGWRWLARLARLPGMLWLMERSYRGFLRVRPAIQRWVVRLERR 133
           G + SGA AFV +WA LPGWR LA LA++PGMLW ME++Y GFL VRPAIQR+V++ +  
Sbjct: 74  GELLSGAAAFVHVWAQLPGWRVLAWLAKVPGMLWAMEKAYNGFLPVRPAIQRFVLKFDTS 133

Query: 134 RGP 136
             P
Sbjct: 134 HLP 136


>emb|CBA31424.1| hypothetical protein Csp_F37460 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 144

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 10/126 (7%)

Query: 12  LTVLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVGMT---RAQLLARFH 68
           LTV++DG CPLCRREIG+YQ +     +++ D+S P         G++   +A+L+ARFH
Sbjct: 17  LTVMFDGTCPLCRREIGMYQSLDPLQDVQWLDVSAP-------QAGLSPEEQARLMARFH 69

Query: 69  VRREDGAVFSGAEAFVQLWATLPGWRWLARLARLPGMLWLMERSYRGFLRVRPAIQRWVV 128
           VR  DG + SGA AFV+LW T+PGWRWL R+ RLPG+  ++E +YRGFL +RP +Q+ ++
Sbjct: 70  VRLPDGRMLSGAAAFVELWLTMPGWRWLGRIGRLPGVTPILELTYRGFLHLRPHLQKLML 129

Query: 129 RLERRR 134
             E RR
Sbjct: 130 AAEARR 135


>ref|YP_001241262.1| hypothetical protein BBta_5381 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37356.1| hypothetical protein BBta_5381 [Bradyrhizobium sp. BTAi1]
          Length = 133

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/121 (54%), Positives = 80/121 (66%), Gaps = 3/121 (2%)

Query: 13  TVLYDGGCPLCRREIGLYQRIGEDAPLRFCDISQPCIPADELPVGMTRAQLLARFHVRRE 72
           TV YDG CPLCR EIG Y R  +D  L F D+S         P G+T+ + +ARFHVR  
Sbjct: 9   TVYYDGSCPLCRAEIGYYSRTDQDGALCFVDVSAA---GAAPPEGLTQREAMARFHVRAG 65

Query: 73  DGAVFSGAEAFVQLWATLPGWRWLARLARLPGMLWLMERSYRGFLRVRPAIQRWVVRLER 132
           DG + SGAEAFV++W  LP WRW ARLA LPG+L ++E  YR FL VRP I R V RL++
Sbjct: 66  DGRLLSGAEAFVEVWRRLPRWRWAARLASLPGVLAVLELGYRLFLPVRPFISRGVARLQQ 125

Query: 133 R 133
           R
Sbjct: 126 R 126


>ref|ZP_08504917.1| hypothetical protein METUNv1_01966 [Methyloversatilis universalis
           FAM5]
 gb|EGK71742.1| hypothetical protein METUNv1_01966 [Methyloversatilis universalis
           FAM5]
          Length = 310

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/123 (56%), Positives = 81/123 (65%), Gaps = 5/123 (4%)

Query: 12  LTVLYDGGCPLCRREIGLYQRIG---EDAPLRFCDISQPCIPADELPVGMTRAQLLARFH 68
           LTVLYDGGCPLCRREI   + +    +D+ L F DIS     AD       R  LLARFH
Sbjct: 10  LTVLYDGGCPLCRREIAHVKGLADRRQDSALCFVDISADA--ADSACFAADRTALLARFH 67

Query: 69  VRREDGAVFSGAEAFVQLWATLPGWRWLARLARLPGMLWLMERSYRGFLRVRPAIQRWVV 128
           V+R DG+   GA AFV +W  LPGWRWLARLA+LPG+L L+ER+Y  FLRVRP +Q    
Sbjct: 68  VQRADGSRLDGAAAFVAMWQRLPGWRWLARLAQLPGVLPLLERAYCSFLRVRPWLQARAR 127

Query: 129 RLE 131
           R E
Sbjct: 128 RFE 130