BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0691.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773852.1| Holliday junction resolvasome, endonuclease ...   294   3e-78
ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruv...   275   2e-72
ref|YP_001351999.1| Holliday junction resolvase [Janthinobacteri...   270   8e-71
ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas a...   269   1e-70
ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC...   245   2e-63

>ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 180

 Score =  294 bits (753), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 178/180 (98%), Positives = 178/180 (98%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYAP 60
           MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSY P
Sbjct: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DCAAIEKVFVNVNP STLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ
Sbjct: 61  DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180
           VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG
Sbjct: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180


>ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas
           fungivorans Ter331]
 gb|AEK63775.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas
           fungivorans Ter331]
          Length = 180

 Score =  275 bits (703), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 165/180 (91%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYAP 60
           MKILGIDPGLRTTGFGVI KQGN LSYIASGTIKTPD DLP RLKVILASV EV+++YAP
Sbjct: 1   MKILGIDPGLRTTGFGVIDKQGNKLSYIASGTIKTPDADLPQRLKVILASVSEVIRTYAP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DC+AIEKVFVNVNPQSTLLLGQARGAAICALV+ADL VAEYTALQ+KQAVAGHG+AQK Q
Sbjct: 61  DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLPVAEYTALQIKQAVAGHGKAQKQQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180
           VQ+MV RLL+LPGLPGTDAADAL VAICHAH G  L+ L ALAP LA+KG+R+RGGRLVG
Sbjct: 121 VQDMVQRLLQLPGLPGTDAADALAVAICHAHSGDALAHLSALAPGLAKKGLRVRGGRLVG 180


>ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille]
 sp|A6SUQ2|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  270 bits (689), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 160/180 (88%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYAP 60
           MKILGIDPGLRTTGFGVI K GN L+YIASGTIKTPD DLP RLK IL+SV EV+ +Y P
Sbjct: 1   MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTIKTPDADLPQRLKTILSSVSEVIATYHP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DCAAIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G G+AQKAQ
Sbjct: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKAQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180
           VQ+MV RLLKL GLPGTDAADALGVAICHAH G  LS LGALAP LARKG+R+RGGRLVG
Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSVLGALAPELARKGLRVRGGRLVG 180


>ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans]
 sp|A4G1U7|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  269 bits (688), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 153/180 (85%), Positives = 160/180 (88%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYAP 60
           MKILGIDPGLRTTGFGVI KQGN LSYIASGTIKTPD DLP RLK IL SV EV+ +Y P
Sbjct: 1   MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTPDADLPQRLKTILVSVAEVIATYKP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DCAAIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G G+AQKAQ
Sbjct: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKAQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180
           VQ+MV RLLKL GLPGTDAADALGVAICHAH G  LS LGALAP LA+KG+R+RGGRLVG
Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSMLGALAPELAKKGLRVRGGRLVG 180


>ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 180

 Score =  245 bits (626), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/180 (77%), Positives = 152/180 (84%)

Query: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYAP 60
           M+ILGIDPGLR TGFGVI K G+ LSYIASGTIKT D DLP+RLK ILA V EVV +Y P
Sbjct: 1   MRILGIDPGLRITGFGVIEKHGHKLSYIASGTIKTLDIDLPARLKTILAGVSEVVATYRP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120
           DC+AIEKVFVNVNPQSTLLLGQARGAAICALV+ADL VAEYTALQVKQAV G G+AQK Q
Sbjct: 61  DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKEQ 120

Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180
           VQ+MV RLL L G P  DAADALGVAICHAH   VL+ LG LAP LA+KG+R+R GRLVG
Sbjct: 121 VQDMVQRLLMLSGKPTADAADALGVAICHAHNSDVLAILGGLAPGLAKKGLRVRKGRLVG 180