BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0690.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773853.1| hypothetical protein Hsero_0420 [Herbaspiril... 462 e-128 ref|NP_250548.1| hypothetical protein PA1857 [Pseudomonas aerugi... 356 2e-96 ref|YP_791384.1| hypothetical protein PA14_40490 [Pseudomonas ae... 356 3e-96 ref|YP_001348794.1| hypothetical protein PSPA7_3434 [Pseudomonas... 355 5e-96 gb|AAT51174.1| PA1857 [synthetic construct] 354 8e-96 >ref|YP_003773853.1| hypothetical protein Hsero_0420 [Herbaspirillum seropedicae SmR1] gb|ADJ61945.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 299/313 (95%), Positives = 306/313 (97%) Query: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA Sbjct: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 Query: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDDEHHEV 120 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHD+EHHEV Sbjct: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDEEHHEV 120 Query: 121 AAKAAEDVDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGAPLQQQITVLVGIALIMT 180 AA+A ED+DPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGA LQQQITVLVGIALIMT Sbjct: 121 AARAPEDIDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGASLQQQITVLVGIALIMT 180 Query: 181 AGVYGLVAGIVKLDDGGLYLVQHAGASAWGRFKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 AGVYGLVAGIVKLDDGGLYLVQHA ASAWGR KAGIGRAVLAAAPKMMRSLSVIGTIAMF Sbjct: 181 AGVYGLVAGIVKLDDGGLYLVQHASASAWGRIKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 Query: 241 MVGGGILTHGLPFAHHAIEAAAQAVEAIAVVGPILGAITPAVLNALFGVVAGAVVLVVVK 300 MVGGGILTHGLPFAHHAIEAAA AVE +AV+GP+LGAI PAVLNALFGVVAGAVVLVVVK Sbjct: 241 MVGGGILTHGLPFAHHAIEAAAVAVEGVAVIGPVLGAIAPAVLNALFGVVAGAVVLVVVK 300 Query: 301 LAQRVLSLFKKKN 313 LAQRVLSLF+KKN Sbjct: 301 LAQRVLSLFRKKN 313 >ref|NP_250548.1| hypothetical protein PA1857 [Pseudomonas aeruginosa PAO1] ref|ZP_01365208.1| hypothetical protein PaerPA_01002324 [Pseudomonas aeruginosa PACS2] ref|ZP_04933572.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gb|AAG05246.1|AE004611_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gb|EAZ57691.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gb|EGM22786.1| hypothetical protein PA13_03308 [Pseudomonas aeruginosa 138244] Length = 307 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 220/311 (70%), Positives = 249/311 (80%), Gaps = 6/311 (1%) Query: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 MAG++ L+DDIA VLDDVSLMTKVAAKKTAGVLGDDLALNAQQV GV A+RELPVVWA Sbjct: 1 MAGASLLTLLDDIAAVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA 60 Query: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDDEHHEV 120 VAKGSL+NKAILVPAAL ISAF PWAV PLLMLGGA+LCFEGFEK+AHKYLPHDDEH + Sbjct: 61 VAKGSLRNKAILVPAALLISAFAPWAVIPLLMLGGAYLCFEGFEKIAHKYLPHDDEHADE 120 Query: 121 AAKAAEDVDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGAPLQQQITVLVGIALIMT 180 AA AA +VD E++KI A+RTDFILSAEIIAITLGTVA + Q+ VLVGIAL+MT Sbjct: 121 AALAA-NVDVAALEKQKIGGAIRTDFILSAEIIAITLGTVAESSFTTQVLVLVGIALVMT 179 Query: 181 AGVYGLVAGIVKLDDGGLYLVQHAGASAWGRFKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 GVYGLVAGIVKLDD GLYL + F G+G A+L AP +M+ LSV+G AMF Sbjct: 180 IGVYGLVAGIVKLDDAGLYLSRRDSG-----FAQGLGGAILRTAPYLMKGLSVVGMAAMF 234 Query: 241 MVGGGILTHGLPFAHHAIEAAAQAVEAIAVVGPILGAITPAVLNALFGVVAGAVVLVVVK 300 MVGGGILTHG+P HHAIE AAQ+V IA +GP+L AITP +LN LFG+VAGAVVL V Sbjct: 235 MVGGGILTHGIPVVHHAIEQAAQSVAGIATLGPLLAAITPTLLNFLFGIVAGAVVLAGVL 294 Query: 301 LAQRVLSLFKK 311 L +R+L KK Sbjct: 295 LVKRLLPKKKK 305 >ref|YP_791384.1| hypothetical protein PA14_40490 [Pseudomonas aeruginosa UCBPP-PA14] ref|ZP_06879224.1| hypothetical protein PaerPAb_16436 [Pseudomonas aeruginosa PAb1] ref|ZP_07796445.1| putative membrane protein [Pseudomonas aeruginosa 39016] gb|ABJ11045.1| putative membrane protein [Pseudomonas aeruginosa UCBPP-PA14] gb|EFQ41541.1| putative membrane protein [Pseudomonas aeruginosa 39016] gb|EGM24446.1| hypothetical protein PA15_00872 [Pseudomonas aeruginosa 152504] dbj|BAK89625.1| hypothetical protein NCGM2_2773 [Pseudomonas aeruginosa NCGM2.S1] Length = 307 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 220/311 (70%), Positives = 249/311 (80%), Gaps = 6/311 (1%) Query: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 MAG++ L+DDIA VLDDVSLMTKVAAKKTAGVLGDDLALNAQQV GV A+RELPVVWA Sbjct: 1 MAGASLLTLLDDIAAVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA 60 Query: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDDEHHEV 120 VAKGSL+NKAILVPAAL ISAF PWAV PLLMLGGA+LCFEGFEK+AHKYLPHDDEH + Sbjct: 61 VAKGSLRNKAILVPAALLISAFAPWAVIPLLMLGGAYLCFEGFEKIAHKYLPHDDEHADE 120 Query: 121 AAKAAEDVDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGAPLQQQITVLVGIALIMT 180 AA AA +VD E++KI A+RTDFILSAEIIAITLGTVA + Q+ VLVGIAL+MT Sbjct: 121 AALAA-NVDVAALEKQKIGGAIRTDFILSAEIIAITLGTVAESSFTTQVLVLVGIALVMT 179 Query: 181 AGVYGLVAGIVKLDDGGLYLVQHAGASAWGRFKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 GVYGLVAGIVKLDD GLYL + F G+G A+L AP +M+ LSV+G AMF Sbjct: 180 IGVYGLVAGIVKLDDAGLYLSKRDSG-----FAQGLGGAILRTAPYLMKGLSVVGMAAMF 234 Query: 241 MVGGGILTHGLPFAHHAIEAAAQAVEAIAVVGPILGAITPAVLNALFGVVAGAVVLVVVK 300 MVGGGILTHG+P HHAIE AAQ+V IA +GP+L AITP +LN LFG+VAGAVVL V Sbjct: 235 MVGGGILTHGIPVVHHAIEQAAQSVAGIATLGPLLAAITPTLLNFLFGIVAGAVVLAGVL 294 Query: 301 LAQRVLSLFKK 311 L +R+L KK Sbjct: 295 LVKRLLPKKKK 305 >ref|YP_001348794.1| hypothetical protein PSPA7_3434 [Pseudomonas aeruginosa PA7] gb|ABR84111.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 307 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 218/311 (70%), Positives = 248/311 (79%), Gaps = 6/311 (1%) Query: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 MAG++ L+DDIA VLDDVSLMTKVAAKKTAGVLGDDLALNAQQV GV A+RELPVVWA Sbjct: 1 MAGASLLTLLDDIAAVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA 60 Query: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDDEHHEV 120 VAKGSL+NKAILVPAAL ISAF PWAV PLLMLGGA+LCFEGFEK+AHKYLPH+DEH + Sbjct: 61 VAKGSLRNKAILVPAALLISAFAPWAVIPLLMLGGAYLCFEGFEKIAHKYLPHEDEHGDE 120 Query: 121 AAKAAEDVDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGAPLQQQITVLVGIALIMT 180 A AA +VD E++KI A+RTDFILSAEIIAITLGTVA + Q+ VLVGIAL+MT Sbjct: 121 QALAA-NVDLAALEKQKIGGAIRTDFILSAEIIAITLGTVAESSFTTQVLVLVGIALVMT 179 Query: 181 AGVYGLVAGIVKLDDGGLYLVQHAGASAWGRFKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 GVYGLVAGIVKLDD GLYL + F G+G A+L AP +M+ LSV+G AMF Sbjct: 180 VGVYGLVAGIVKLDDAGLYLSKRDSG-----FARGLGGAILRTAPYLMKGLSVVGMAAMF 234 Query: 241 MVGGGILTHGLPFAHHAIEAAAQAVEAIAVVGPILGAITPAVLNALFGVVAGAVVLVVVK 300 MVGGGILTHG+P HHAIE AAQ+V IA +GP+L AITP +LN LFG+VAGAVVL V Sbjct: 235 MVGGGILTHGIPLVHHAIEQAAQSVAGIATLGPLLAAITPTLLNFLFGIVAGAVVLAGVL 294 Query: 301 LAQRVLSLFKK 311 L +R+L KK Sbjct: 295 LVKRLLPKKKK 305 >gb|AAT51174.1| PA1857 [synthetic construct] Length = 308 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 219/311 (70%), Positives = 248/311 (79%), Gaps = 6/311 (1%) Query: 1 MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60 MAG++ L+DDIA VLDDVSLMTKVAAKKTAGVLGDDLALNAQQV GV A+RELPVVWA Sbjct: 1 MAGASLLTLLDDIAAVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVNADRELPVVWA 60 Query: 61 VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDDEHHEV 120 VAKGSL+NKAILVPAAL ISAF PWAV PLLMLGGA+LCFEGFEK+AHKYLPHDDEH + Sbjct: 61 VAKGSLRNKAILVPAALLISAFAPWAVIPLLMLGGAYLCFEGFEKIAHKYLPHDDEHADE 120 Query: 121 AAKAAEDVDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGAPLQQQITVLVGIALIMT 180 AA AA +VD E++KI A+RTDFILSAEIIAITLGTVA + Q+ VLVGIAL+MT Sbjct: 121 AALAA-NVDVAALEKQKIGGAIRTDFILSAEIIAITLGTVAESSFTTQVLVLVGIALVMT 179 Query: 181 AGVYGLVAGIVKLDDGGLYLVQHAGASAWGRFKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240 GVYGLVAGIVKLDD GLYL + F G+G A+L AP +M+ LSV+G AMF Sbjct: 180 IGVYGLVAGIVKLDDAGLYLSRRDSG-----FAQGLGGAILRTAPYLMKGLSVVGMAAMF 234 Query: 241 MVGGGILTHGLPFAHHAIEAAAQAVEAIAVVGPILGAITPAVLNALFGVVAGAVVLVVVK 300 MVGGGILTHG+P HHAIE AAQ+V IA +GP+L AITP +LN LFG+VAGA VL V Sbjct: 235 MVGGGILTHGIPVVHHAIEQAAQSVAGIATLGPLLAAITPTLLNFLFGIVAGAAVLAGVL 294 Query: 301 LAQRVLSLFKK 311 L +R+L KK Sbjct: 295 LVKRLLPKKKK 305