BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0689.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding ... 329 2e-88 sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-depende... 292 3e-77 ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimo... 285 4e-75 ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthin... 281 7e-74 ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobac... 266 2e-69 >ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 189/192 (98%), Positives = 191/192 (99%) Query: 47 MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 106 MIGRLSGILLEK+PPNLLVDCQGVGYEVAVPMSTYYNLP LGEKVTLLTHLAIREDAHIL Sbjct: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 Query: 107 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 166 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT Sbjct: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 Query: 167 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 226 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDS+VSD Sbjct: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 Query: 227 GIKLALKALSKG 238 GIKLALKALSKG Sbjct: 181 GIKLALKALSKG 192 >sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 192 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 162/192 (84%), Positives = 177/192 (92%) Query: 47 MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 106 MIGRLSG+LLEK PP LLVDC GVGYEV VPMST+YNLPGLGEKV LLTHL +REDAHIL Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60 Query: 107 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 166 FGFGTAEERN FK+L+KI+G+GARTALSILSGMSVADL+ A+TLQEAGRLT++PGIGKKT Sbjct: 61 FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120 Query: 167 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 226 AERLLLELKGKLGADLGA GV+HSDA++DILNALLALGYSDKEA LAMKQVP + VSD Sbjct: 121 AERLLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLAMKQVPAGTGVSD 180 Query: 227 GIKLALKALSKG 238 GIKLALKALSK Sbjct: 181 GIKLALKALSKA 192 >ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331] gb|AEK60543.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331] Length = 192 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 162/191 (84%), Positives = 174/191 (91%) Query: 47 MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 106 MIGRLSGILLEK PP LL+DC GVGYEV VPMST+YNLPGLGEKV LLTHLAIREDAH+L Sbjct: 1 MIGRLSGILLEKNPPQLLIDCNGVGYEVGVPMSTFYNLPGLGEKVALLTHLAIREDAHVL 60 Query: 107 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 166 +GFGTAEERN FK+LIKISGVGARTALSILSGMSV DLAQA+T+QEAGRLT+VPGIGKKT Sbjct: 61 YGFGTAEERNVFKQLIKISGVGARTALSILSGMSVQDLAQAITMQEAGRLTKVPGIGKKT 120 Query: 167 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 226 AERLLLELKGKLGADLG V SD S DILNAL+ALGYSDKEA LA+KQ+P D+SVSD Sbjct: 121 AERLLLELKGKLGADLGPVGSHHASDISGDILNALIALGYSDKEAMLALKQLPADASVSD 180 Query: 227 GIKLALKALSK 237 GIKLALKALSK Sbjct: 181 GIKLALKALSK 191 >ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] sp|A6SUQ3|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 191 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 158/192 (82%), Positives = 176/192 (91%), Gaps = 1/192 (0%) Query: 47 MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 106 MIGRLSG+LLEK PP LLVDC GVGYEV VPMST+YNLPGLG+KV LLTHL +REDAHIL Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60 Query: 107 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 166 FGFGT EERN FK+L+KI+G+GARTALSILSGMSVADLAQA+T+QEAGRLT++PGIGKKT Sbjct: 61 FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120 Query: 167 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 226 AERLLLELKGKLGADLG VAG V +DA++DILNALLALGYSDKEA LA+KQVP + VSD Sbjct: 121 AERLLLELKGKLGADLG-VAGAVATDATSDILNALLALGYSDKEAMLALKQVPAGTGVSD 179 Query: 227 GIKLALKALSKG 238 GIKLALK+LSK Sbjct: 180 GIKLALKSLSKA 191 >ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] Length = 192 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 154/192 (80%), Positives = 166/192 (86%) Query: 47 MIGRLSGILLEKIPPNLLVDCQGVGYEVAVPMSTYYNLPGLGEKVTLLTHLAIREDAHIL 106 MIGRLSG LLEK PP LLVDC GVGYEV V MST+YNLP LGEK+ LLT +REDAH+L Sbjct: 1 MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60 Query: 107 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 166 FGFGTAEERN F++LIKI+GVG R AL+ILSGMSVA+LAQA+TLQE GRLT+VPG+GKKT Sbjct: 61 FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120 Query: 167 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSSVSD 226 AERLLLELKGKLGADLG V GV D S DILNALLALGYSDKEA LAMKQVP S VSD Sbjct: 121 AERLLLELKGKLGADLGIVGGVALPDGSGDILNALLALGYSDKEAMLAMKQVPAGSGVSD 180 Query: 227 GIKLALKALSKG 238 GIKLALKALSKG Sbjct: 181 GIKLALKALSKG 192