BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0688.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773855.1| Holliday junction resolvase DNA helicase sub... 644 0.0 ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthin... 621 e-176 ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Hermini... 613 e-173 ref|YP_004751367.1| Holliday junction DNA helicase RuvB [Collimo... 611 e-173 ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobac... 597 e-169 >ref|YP_003773855.1| Holliday junction resolvase DNA helicase subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61947.1| Holliday junction resolvase, DNA helicase subunit protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 341/351 (97%), Positives = 346/351 (98%) Query: 1 MSIQTDDFSEQRIISATPASANEEAVERALRPKQLDEYVGQEKVRSQLEIFISAARKRGE 60 MSIQTDDFSEQRIISATPASANEEA+ERALRPKQLDEYVGQEKVR+QLEIFISAARKRGE Sbjct: 1 MSIQTDDFSEQRIISATPASANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGE 60 Query: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIARRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVE+GALEIARRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGEGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 AEVKG+GRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGQGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQGYLQRTPRGR+AT AY HFGVTAPRT PNGDLW G Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRIATGAAYQHFGVTAPRTSPNGDLWGG 351 >ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthinobacterium sp. Marseille] sp|A6SUQ4|RUVB_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB gb|ABR88318.1| holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 352 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 322/351 (91%), Positives = 339/351 (96%) Query: 1 MSIQTDDFSEQRIISATPASANEEAVERALRPKQLDEYVGQEKVRSQLEIFISAARKRGE 60 MSIQTDDFSEQRII+ATPASANEEA+ERALRPKQLDEYVGQEK+R QLEIFI+AAR+R E Sbjct: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHE 60 Query: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIARRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL +IVTRS+ LLNAPI E+GA EIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTKIVTRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGEGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 AEVKG G+IT+ MADAALVMLDVDPVGFDLMDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGKITKAMADAALVMLDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNGDLWAG Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGDLWAG 351 >ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Herminiimonas arsenicoxydans] sp|A4G1U9|RUVB_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB emb|CAL60486.1| Holliday junction DNA helicase ruvB [Herminiimonas arsenicoxydans] Length = 352 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 319/351 (90%), Positives = 337/351 (96%) Query: 1 MSIQTDDFSEQRIISATPASANEEAVERALRPKQLDEYVGQEKVRSQLEIFISAARKRGE 60 MSIQTDDFSEQR+I+ATPASANEEA+ERALRPKQLDEYVGQEK+R QLEIFI+AAR+R E Sbjct: 1 MSIQTDDFSEQRVIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRRE 60 Query: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIARRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL RIVTRS+ LLNAPI E+GA EIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTRIVTRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGEGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 AEVKG G IT+ MADAALVMLDVDPVGFD+MDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGDITKAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNG+LW G Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGELWGG 351 >ref|YP_004751367.1| Holliday junction DNA helicase RuvB [Collimonas fungivorans Ter331] gb|AEK60544.1| Holliday junction DNA helicase RuvB [Collimonas fungivorans Ter331] Length = 352 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 317/350 (90%), Positives = 337/350 (96%) Query: 1 MSIQTDDFSEQRIISATPASANEEAVERALRPKQLDEYVGQEKVRSQLEIFISAARKRGE 60 MSIQTDDF+EQRII+ATPAS NEEA+ERALRPKQLDEYVGQEK+R QL+IFI+AAR+R E Sbjct: 1 MSIQTDDFAEQRIIAATPASPNEEAIERALRPKQLDEYVGQEKIRDQLQIFITAARQRRE 60 Query: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIARRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP +L++IVTRSA LL API+++GA EIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPQQLSKIVTRSASLLGAPIMDDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGEGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 AEVKG G IT+ MADAALVMLDVDPVGFD+MDRKLLEAVLFKFGGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGEITKPMADAALVMLDVDPVGFDIMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWA 350 RDTIEDVLEPYLIQQGYLQRTPRGR+ATPLAYTHFGV APRTGPNG+LW Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRIATPLAYTHFGVAAPRTGPNGELWG 350 >ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] gb|EGF33170.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 314/350 (89%), Positives = 329/350 (94%) Query: 1 MSIQTDDFSEQRIISATPASANEEAVERALRPKQLDEYVGQEKVRSQLEIFISAARKRGE 60 MSIQTD+F+EQRI + TPAS NEEA+ERALRPKQLDEYVGQEK+R QL IFI+AA++R E Sbjct: 1 MSIQTDNFTEQRITAPTPASPNEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRRE 60 Query: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIARRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYT ELARIVTRSA LLNAPI EGA EIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTATELARIVTRSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGEGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 AEVK G IT+ ADAALVMLDVDPVGFDLMDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKSNGDITKATADAALVMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWA 350 R+TIEDVLEPYLIQQGYLQRTPRGR+ATPLAYTHFGV APRTGPNG+LW Sbjct: 301 RETIEDVLEPYLIQQGYLQRTPRGRIATPLAYTHFGVAAPRTGPNGELWG 350