BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0684.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773858.1| signal peptide protein [Herbaspirillum serop...   255   1e-66
ref|YP_004751370.1| hypothetical protein CFU_0713 [Collimonas fu...   201   2e-50
ref|YP_521607.1| hypothetical protein Rfer_0322 [Rhodoferax ferr...   190   6e-47
ref|YP_546967.1| hypothetical protein Bpro_0103 [Polaromonas sp....   180   6e-44
ref|ZP_08276359.1| hypothetical protein IMCC9480_1962 [Oxalobact...   179   1e-43

>ref|YP_003773858.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61950.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  255 bits (652), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 141/154 (91%), Positives = 147/154 (95%)

Query: 1   MNRISSPSRLATLSLLAATLLASAAAWADGSPVGLWKSIDDATGKPKALIRISENNGELS 60
           M RI+SPS L  LSLLA +LL S AAWADGSPVGLWKSIDDATGKPKALIRISENNGELS
Sbjct: 1   MPRITSPSHLLALSLLATSLLTSTAAWADGSPVGLWKSIDDATGKPKALIRISENNGELS 60

Query: 61  GKIEKLFRAPEEDQNPVCQKCEGELKDKPVIGMTILSGLKKDGEEYNGGQIIDPANGKVY 120
           GKIEKLFRAPEEDQNPVCQKCEGELKDKP+IGMTILSGLKKDG+EYNGGQIIDPANGKVY
Sbjct: 61  GKIEKLFRAPEEDQNPVCQKCEGELKDKPIIGMTILSGLKKDGDEYNGGQIIDPANGKVY 120

Query: 121 KSKLTVVDDGQKLNVRGYVGMPMLGRTQTWLREQ 154
           KSKL+V+DDGQKLNVRGYVGMPMLGRTQTWLREQ
Sbjct: 121 KSKLSVIDDGQKLNVRGYVGMPMLGRTQTWLREQ 154


>ref|YP_004751370.1| hypothetical protein CFU_0713 [Collimonas fungivorans Ter331]
 gb|AEK60547.1| hypothetical protein CFU_0713 [Collimonas fungivorans Ter331]
          Length = 168

 Score =  201 bits (512), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/144 (68%), Positives = 122/144 (84%), Gaps = 2/144 (1%)

Query: 13  LSLLAATLLASAAAWAD--GSPVGLWKSIDDATGKPKALIRISENNGELSGKIEKLFRAP 70
           ++ +A+T L +  A+A    S VGLWK+IDD TGKPKALIRISE NGEL GKIEKL R P
Sbjct: 25  MTAVASTALLAFGAFAQDTSSAVGLWKNIDDHTGKPKALIRISEANGELRGKIEKLLRDP 84

Query: 71  EEDQNPVCQKCEGELKDKPVIGMTILSGLKKDGEEYNGGQIIDPANGKVYKSKLTVVDDG 130
            +DQNP C KC+GELKD+P++GMTI++G+KKDG EYNGG I+DP NGKVYKSK+++ DDG
Sbjct: 85  SQDQNPKCVKCQGELKDQPILGMTIINGMKKDGNEYNGGTILDPDNGKVYKSKMSLADDG 144

Query: 131 QKLNVRGYVGMPMLGRTQTWLREQ 154
           +KLNVRGY+G+PMLGRTQTWLRE+
Sbjct: 145 KKLNVRGYIGVPMLGRTQTWLREE 168


>ref|YP_521607.1| hypothetical protein Rfer_0322 [Rhodoferax ferrireducens T118]
 gb|ABD68076.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 155

 Score =  190 bits (482), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 122/148 (82%), Gaps = 2/148 (1%)

Query: 9   RLATLSL--LAATLLASAAAWADGSPVGLWKSIDDATGKPKALIRISENNGELSGKIEKL 66
           +L TL+L  L+A  +A  A+  + SP GLWK+IDDATGKP+ +IRI+E+NG L GKIEKL
Sbjct: 8   KLNTLALVTLSAACMALPASANEASPTGLWKNIDDATGKPRGMIRITESNGTLQGKIEKL 67

Query: 67  FRAPEEDQNPVCQKCEGELKDKPVIGMTILSGLKKDGEEYNGGQIIDPANGKVYKSKLTV 126
           F AP ED NP C+KCEG LKD PVIG+TILSG+ K+G++Y GGQI+DP NGK Y+S+L +
Sbjct: 68  FPAPNEDLNPTCKKCEGTLKDAPVIGLTILSGMSKEGDQYAGGQILDPDNGKTYRSQLRL 127

Query: 127 VDDGQKLNVRGYVGMPMLGRTQTWLREQ 154
           ++DG+KL VRGY+G+P+LGR+QTW+R++
Sbjct: 128 IEDGKKLEVRGYIGVPLLGRSQTWVRQE 155


>ref|YP_546967.1| hypothetical protein Bpro_0103 [Polaromonas sp. JS666]
 gb|ABE42069.1| hypothetical protein Bpro_0103 [Polaromonas sp. JS666]
          Length = 174

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 112/140 (80%)

Query: 15  LLAATLLASAAAWADGSPVGLWKSIDDATGKPKALIRISENNGELSGKIEKLFRAPEEDQ 74
           +LAA L+A      D SP GLW+++DD +GKP+ALIRI+E+N  L G+IEK+F  P ED 
Sbjct: 35  ILAAALMAPPVRADDASPAGLWRNVDDVSGKPRALIRITESNETLQGRIEKVFPGPTEDP 94

Query: 75  NPVCQKCEGELKDKPVIGMTILSGLKKDGEEYNGGQIIDPANGKVYKSKLTVVDDGQKLN 134
           NP C KC+G  KD PVIG+ IL+GL KDG+EY GGQI+DP NGKVY+SK+ + D+G+KL+
Sbjct: 95  NPKCDKCQGANKDAPVIGLVILNGLTKDGDEYGGGQILDPDNGKVYRSKVRLTDNGKKLS 154

Query: 135 VRGYVGMPMLGRTQTWLREQ 154
           VRGY+G+PMLGR+QTW+R++
Sbjct: 155 VRGYIGVPMLGRSQTWVRQE 174


>ref|ZP_08276359.1| hypothetical protein IMCC9480_1962 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30171.1| hypothetical protein IMCC9480_1962 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 147

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/146 (60%), Positives = 115/146 (78%), Gaps = 1/146 (0%)

Query: 9   RLATLSLLAATLLASAAAWADGSPVGLWKSIDDATGKPKALIRISENNGELSGKIEKLFR 68
           +   L+ L   LL +  A A  SPVGLWKSIDD  G+ KALIRIS++NGEL GKIEK+F 
Sbjct: 3   KTKNLAALTVGLLLATGALAQSSPVGLWKSIDDGNGQAKALIRISDSNGELKGKIEKIFP 62

Query: 69  APEEDQNPVCQKCEGELKDKPVIGMTILSGLKKDGEEYNGGQIIDPANGKVYKSKLTVVD 128
           +  +D++P C KCEG  K +P++GMTI++G++ DG E++GG I+DP NGKVYKSK+T+ D
Sbjct: 63  S-TDDKHPNCDKCEGANKGQPILGMTIINGMRADGSEFSGGTILDPNNGKVYKSKMTLSD 121

Query: 129 DGQKLNVRGYVGMPMLGRTQTWLREQ 154
           +G+KLNVRGY+GMPMLGRTQ WLRE+
Sbjct: 122 EGKKLNVRGYIGMPMLGRTQVWLREE 147