BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0682.p         (224 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003524756.1| flagellar biosynthetic protein [Sideroxydans...   213   1e-53
ref|YP_004227067.1| flagellar biosynthetic protein [Burkholderia...   102   6e-20
ref|YP_001466417.1| flagellar biosynthetic protein [Campylobacte...    97   2e-18

>ref|YP_003524756.1| flagellar biosynthetic protein [Sideroxydans lithotrophicus ES-1]
 gb|ADE12369.1| flagellar biosynthetic protein [Sideroxydans lithotrophicus ES-1]
          Length = 220

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 152/209 (72%), Gaps = 4/209 (1%)

Query: 11  ILLAVSIVLTGCATSRSEIKLSEPSSAAATKAAVASKNKTVLLREVFDERVFEDAPSSPS 70
           +L+A   VLTGCATSRSE+KL    +A  T     +K+K VL+R V DERVFE  PS PS
Sbjct: 11  MLIAALAVLTGCATSRSEVKLGGMDTANYT----VTKSKVVLIRSVTDERVFEQEPSDPS 66

Query: 71  TPSLGFEGSAKSTAEIKARAIGRKRNGFGKALGDVLLENGMTVSQVMRKNITTSLQEAGF 130
           TPSLG EG+  ++A+ KARAIGRKR GFGKALGDVLLENG TV+ V+R+N+TT+ ++AG+
Sbjct: 67  TPSLGGEGANGASADTKARAIGRKRGGFGKALGDVLLENGQTVAGVVRENLTTAFKQAGY 126

Query: 131 KVAANAADAGEAPIVIDAHVKKFWAWFTPGFWAVSVGTQISTDLVVQNKNMPIVINIETS 190
           +  ++AA+AG +P+++D H+K+FWAW  PGFWA+++ + I+TDL +     P V+++   
Sbjct: 127 RTTSSAAEAGPSPMIVDVHIKQFWAWVQPGFWALTLNSHITTDLEISGTAAPTVVSVSEK 186

Query: 191 ENHMAVTEGVWIEDIDKALVKYRSEATGR 219
           ++   VT+  WIE +DK L  YR +A+ +
Sbjct: 187 DSRQLVTDSAWIEIVDKTLKDYREQASAK 215


>ref|YP_004227067.1| flagellar biosynthetic protein [Burkholderia sp. CCGE1001]
 gb|ADX54007.1| flagellar biosynthetic protein [Burkholderia sp. CCGE1001]
          Length = 214

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 18  VLTGCATSRSEIKLSEPSSAAATKAAVASKNKTVLLREVFDERVFEDAPSSPSTPSLGFE 77
           +L GCA  R+ + +S P     T        K V +  V D+R F   P S    SL  +
Sbjct: 15  ILAGCAVGRTTVDVSAPQGTNPTTG------KYVRIDSVQDKRTFSVKPPSADMASL--D 66

Query: 78  GSAKSTAEIKARAIGRKRNGFGKALGDVLLENGMTVSQVMRKNITTSLQEAGFKVAANAA 137
            +  S+   KARAIGRKRNG+GKALGDV+L  G T S ++   + T  Q+AG+ V     
Sbjct: 67  PNEDSSDASKARAIGRKRNGYGKALGDVVLPQGKTASGLVESALATGFQDAGYIVVKQGD 126

Query: 138 DAGEAPIVIDAHVKKFWAWFTPGFWAVSVGT----QISTDLVVQNKNMPIVINIETSENH 193
               A   + A +  FWAWF PGFW++        Q+S D+   +      I    SE+ 
Sbjct: 127 PNFGAAAPVTAQIIDFWAWFEPGFWSIKTNQKSELQLSGDVGALHGEQ--TIKTRVSESK 184

Query: 194 MAVTEGVWIEDIDKAL 209
             V    W E ++K L
Sbjct: 185 QVVVSSDWQEIVEKGL 200


>ref|YP_001466417.1| flagellar biosynthetic protein [Campylobacter concisus 13826]
 gb|EAT98955.1| putative lipoprotein [Campylobacter concisus 13826]
          Length = 214

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 5/214 (2%)

Query: 11  ILLAVSIVLTGCATSRSEIKLSEPSSAAATKAAVASKNKTVLLREVFDERVFEDAPSSPS 70
           +LLA+      C  +   I +S P   A +     SK   + +  V D RVFE+ P   S
Sbjct: 4   LLLAIFAAFMLCGCAPKGIFVSLPDEQAPSSI---SKKTKIYIESVKDVRVFENDPKQAS 60

Query: 71  TPSLGFEGSAKSTAEIKARAIGRKRNGFGKALGDVLLENGMTVSQVMRKNITTSLQEAGF 130
           TPSL      + +A+ K + IGR RN +G+ L +V+LEN    + V+R  I  + +  G+
Sbjct: 61  TPSLYKHNVNEVSAKEKQKYIGRMRNSYGRGLWNVILENKQRTTSVVRARIEDAFRSNGY 120

Query: 131 KVAANAADAGEAPIVIDAHVKKFWAWFTPGFWAVSVGTQISTDLVVQNKNMPIVINIETS 190
           +V  N  +  +  I ++A ++K W + T G   V +   IST L V NK +  V  ++  
Sbjct: 121 QVIKNENEIDKDTISVNARIEKLWTYLTLGAVKVGLNADISTTLNVNNKELNTV--VKRK 178

Query: 191 ENHMAVTEGVWIEDIDKALVKYRSEATGRFMDMN 224
           E ++ V +  +   I  +L +Y+ +   +  ++N
Sbjct: 179 EEYLLVNQNDYANIIKSSLSEYKEKLAKQISELN 212