BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0681.p         (262 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EFV82668.1| hypothetical protein HMPREF0005_00361 [Achromobac...   165   7e-39
ref|YP_294251.1| hypothetical protein Reut_A0025 [Ralstonia eutr...   133   2e-29
ref|YP_004683879.1| hypothetical protein CNE_1c00290 [Cupriavidu...   132   6e-29
ref|ZP_04583636.1| conserved hypothetical protein [Helicobacter ...   123   2e-26
ref|YP_003743306.1| hypothetical protein EbC_39280 [Erwinia bill...   122   4e-26

>gb|EFV82668.1| hypothetical protein HMPREF0005_00361 [Achromobacter xylosoxidans
           C54]
          Length = 273

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 84/149 (56%), Positives = 108/149 (72%), Gaps = 5/149 (3%)

Query: 117 AGGALRAAFDGTSGEIAKSDVLASLKSIAELSRKSKARNRIVLLVSDMLENSSVSSFYAD 176
           A  AL+ AF G S E+AKSD+L++LK ++   R+S AR+ IV ++SDMLENSS+SSFYA+
Sbjct: 127 AATALKTAFAGVSAELAKSDILSALKELSSRVRQSGARDMIVFVLSDMLENSSISSFYAN 186

Query: 177 RGHSVRKIDPAKEMQLAEQNQLLGDFGGARVYVIGAGLLSEDGKKSKS---YRDPKTMQA 233
             H+VR IDP+ E++  E  Q  GDFGGARV+V+GAGL+  DG   +    YRDPKTM  
Sbjct: 187 --HNVRAIDPSVEIKKVEAAQQFGDFGGARVFVLGAGLVQGDGSARRDRGVYRDPKTMAK 244

Query: 234 LAGFWKTYLEKSGAQLVEFGQPALLSPIR 262
           L  FW+ Y  +S AQLVEFG PALLSP+R
Sbjct: 245 LRTFWELYFARSNAQLVEFGAPALLSPVR 273


>ref|YP_294251.1| hypothetical protein Reut_A0025 [Ralstonia eutropha JMP134]
 gb|AAZ59407.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 298

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 5/155 (3%)

Query: 111 TFFYKVAGGALRAAFDGTSGEIAKSDVLASLKSIAELSRKSKARNRIVLLVSDMLENSSV 170
           T+  K+   ++R A  GTS  +A+SDVLAS+ +++++ R   A+ + VL+VSDMLENSS+
Sbjct: 146 TYGTKLVAESVREALQGTSEALARSDVLASVAAVSQVVRDVAAQQKTVLIVSDMLENSSI 205

Query: 171 SSFYADRGHSVRKIDPAKEMQLAEQNQLLGDFGGARVYVIGAGLLSEDG---KKSKSYRD 227
           SSFY+     +R+ID  +E++  ++  L  DFGGA VYV+GAG++ E       + SYR 
Sbjct: 206 SSFYSQ--ERMRQIDATQELRKVQKANLRADFGGASVYVMGAGIVPEPKGARNAAASYRS 263

Query: 228 PKTMQALAGFWKTYLEKSGAQLVEFGQPALLSPIR 262
           P++++AL  FW  + E+S A+L  FG PALL+PIR
Sbjct: 264 PQSVEALRTFWDGFFERSNARLAGFGAPALLTPIR 298


>ref|YP_004683879.1| hypothetical protein CNE_1c00290 [Cupriavidus necator N-1]
 gb|AEI75398.1| hypothetical protein CNE_1c00290 [Cupriavidus necator N-1]
          Length = 298

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 106/151 (70%), Gaps = 5/151 (3%)

Query: 115 KVAGGALRAAFDGTSGEIAKSDVLASLKSIAELSRKSKARNRIVLLVSDMLENSSVSSFY 174
           K+   ++R A  G+S  +A+SDVLAS+ ++++  R + A+ + VL+VSDMLENSS+SSFY
Sbjct: 150 KLVAESVREALQGSSEALARSDVLASIAAVSQAVRDTAAQQKTVLIVSDMLENSSISSFY 209

Query: 175 ADRGHSVRKIDPAKEMQLAEQNQLLGDFGGARVYVIGAGLLSE-DGKKS--KSYRDPKTM 231
           +     +R+ID  +E++  E+  +  DFGGA VYV+GAG++ E  G +S   SYR P+++
Sbjct: 210 SQ--ERMRQIDAVQELRKVEKANVRADFGGASVYVMGAGIVPEPKGARSAAASYRSPQSI 267

Query: 232 QALAGFWKTYLEKSGAQLVEFGQPALLSPIR 262
           +AL  FW  + E+S A+LV FG PALL+PIR
Sbjct: 268 EALRTFWDGFFERSNARLVGFGAPALLTPIR 298


>ref|ZP_04583636.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gb|EEO25514.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 10/144 (6%)

Query: 122 RAAFDGTSG--EIAKSDVLASLKSIAE-LSRKSKARNRIVLLVSDMLENSSVSSFYADRG 178
           + + +G+ G  +IAKSD+L +LK  A+ +     A+ +IV+L SDMLENS+++SFYA+  
Sbjct: 131 KKSIEGSFGTNDIAKSDILYALKDFAKSVIAPLNAKRKIVILASDMLENSAITSFYAN-- 188

Query: 179 HSVRKIDPAKEMQLAEQNQLLGDFGGARVYVIGAGLLSEDGKKSKSYRDPKTMQALAGFW 238
           ++VR+ID  KE+ +  +N L GDFGGA V++IGAG+ S+     KSY +PK + +L  FW
Sbjct: 189 NAVRQIDSNKELSIVAKNDLFGDFGGAEVFIIGAGISSK-----KSYVNPKMLASLTNFW 243

Query: 239 KTYLEKSGAQLVEFGQPALLSPIR 262
           + Y  KS A L   G PAL S IR
Sbjct: 244 QEYFAKSNATLKNIGTPALKSAIR 267


>ref|YP_003743306.1| hypothetical protein EbC_39280 [Erwinia billingiae Eb661]
 emb|CAX61459.1| Uncharacterized protein [Erwinia billingiae Eb661]
          Length = 276

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 4/153 (2%)

Query: 110 KTFFYKVAGGALRAAFDGTSGEIAKSDVLASLKSIAELSRKSKARNRIVLLVSDMLENSS 169
           K +F +  G  L A+F      IAKS++L SLK IAE  +   A ++ V+LVSDMLENS 
Sbjct: 128 KQYFDQGIGKLLAASFAAEGDNIAKSEILDSLKRIAEDLKSDPAPDKSVVLVSDMLENSD 187

Query: 170 VSSFYADRGHSVRKIDPAKEMQLAEQNQLLGDFGGARVYVIGAGLLSEDGKKSKSYRDPK 229
             SFY++  + +R + P KE+    +  L+ DF GA+VYV GAGL+    K   +YR  K
Sbjct: 188 FGSFYSN--NQIRLLAPDKELARVTKQNLIADFSGAKVYVAGAGLIDTSAK--NNYRSGK 243

Query: 230 TMQALAGFWKTYLEKSGAQLVEFGQPALLSPIR 262
            MQ L GFW+ Y   S A+LV FG P L   I+
Sbjct: 244 IMQQLEGFWQQYFTASNAELVSFGAPELTVEIK 276