BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0680.p (611 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_736902.1| hypothetical protein Shewmr7_0846 [Shewanella s... 257 4e-66 ref|YP_294250.1| hypothetical protein Reut_A0024 [Ralstonia eutr... 238 2e-60 ref|ZP_04583635.1| conserved hypothetical protein [Helicobacter ... 232 1e-58 ref|YP_004683878.1| hypothetical protein CNE_1c00280 [Cupriavidu... 221 4e-55 ref|YP_001358605.1| hypothetical protein SUN_1295 [Sulfurovum sp... 214 5e-53 >ref|YP_736902.1| hypothetical protein Shewmr7_0846 [Shewanella sp. MR-7] gb|ABI41845.1| conserved hypothetical protein [Shewanella sp. MR-7] Length = 529 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 181/546 (33%), Positives = 269/546 (49%), Gaps = 64/546 (11%) Query: 87 FFDTYPLAAWSVVSVLMAAVVIMTLWEQVKWWWFNTWVRFPLAGRIARLSRDL-----NE 141 F+ Y ++SV+ V I W+QV +WW NTW FPL G+ +RL++D N Sbjct: 7 LFNEYRALVVLLLSVMALIVTITIWWDQVSFWWLNTWYAFPLIGKESRLAKDYETQVKNY 66 Query: 142 DSSLPGWHKGESTLCLEYKKFIHI--QDEHDFNEKVTYLTKSGDNGRKATPNWIWLLTIS 199 D W E LC ++ +DE F++ YL K +NGR W+L + Sbjct: 67 DKE---WLNSEVALCADFAAHYEKVNKDEELFSKSQDYLGKVTENGRNNLHILGWILIAA 123 Query: 200 MVFVEAMGFSYVLAGYTLPGASENLQQTGAYGIAFLISVILVAFTHLAGHELYKSERVNL 259 +VFVEAMGFSYVL+G+T+PGASE LQQ GA GIAF+ISV+LV TH GHEL+ + + Sbjct: 124 LVFVEAMGFSYVLSGFTIPGASEKLQQQGAIGIAFIISVLLVGLTHFTGHELHSNSLIKK 183 Query: 260 ARRQWNEAGRKQELFTGTIPLAR----PQSSDDHKPTFTQLCNRVGSH----PSYKITVL 311 A+ W A + + P R DD +P + QL +R+ ++ P Y IT + Sbjct: 184 AKVWWKNAKNRDKATPELAPNTRINLDKTFEDDDEPQYKQLISRISTNAEVKPRYLITTI 243 Query: 312 TVIFVLLVASLATYVRGQVLERELEARVTLSSNQAGNAARSAAGSLDMSATNVRLPADDD 371 T I +L++A LATYVRGQVLE+ V N +S+ + PA Sbjct: 244 TAIAILVIAVLATYVRGQVLEKMHIDEV--------NIKQSSVIYQEQDPYAEAPPAMLV 295 Query: 372 AANRAADRKAVSDEADIDRHGGWATFIVLAFVFVFLQILGVIFGYRWGFAGENSAEAYRD 431 + AD KA D + ++ GGW TFI LAF+F+ LQI G++ G++ GFAG++S +A ++ Sbjct: 296 QEAKNADDKAGDDVWEREQKGGWGTFIFLAFLFILLQIFGILIGFKTGFAGKHSKDARKE 355 Query: 432 IGSGRYSSYSAVREHYRR----IADTAQASLATLQQKMMMHNSTHGTSGQHLSKT----F 483 IG+ + S + HY R +A AQ L LQQ+M + + L Sbjct: 356 IGN--FKSEREFKTHYSRLKQQVARVAQKRLTNLQQRMNQKAEVNCQDPKVLEMLEGCGH 413 Query: 484 RDFMQQTRLADAAERQSERDFAQTVAAQQATPLHVPAHPAAAAAPVAAPAVVAVAAVVQA 543 R F+ T + D +E + Q+V ++ + P AA + A ++ Sbjct: 414 RSFL--TYMDDLG--NAENKYTQSVRLREHQEVQETTRPTVIAA--------SKVADIET 461 Query: 544 PAAPAGTDSLPDVMARLDA-LGEDKEAKKKLMAQLPEALNMAVREEL------KRRKDER 596 P ++ ARL A + + AKK + PE +R+EL +++ E Sbjct: 462 PE---------EMEARLQAEILAEVHAKKAAQIETPEQAEQRIRQELLAEIAQQKKVAET 512 Query: 597 ERKARE 602 E + RE Sbjct: 513 EEQMRE 518 >ref|YP_294250.1| hypothetical protein Reut_A0024 [Ralstonia eutropha JMP134] gb|AAZ59406.1| hypothetical protein Reut_A0024 [Ralstonia eutropha JMP134] Length = 494 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 169/504 (33%), Positives = 247/504 (49%), Gaps = 60/504 (11%) Query: 121 NTWVRFPLAGRIARLSRDLNEDSSLPGWHKGESTLCLEYKKFIHIQDEHDFNEKVTYLTK 180 N W PL G+IARLSRD + W E TLC +YK+FIH E +FN+++ YL+K Sbjct: 38 NLWYGLPLIGKIARLSRDTTRYAKDKSWTLSERTLCDDYKQFIHFTTEDEFNKRLNYLSK 97 Query: 181 SGDNGRKATPNWIWLLTISMVFVEAMGFSYVLAGYTL-PGASENLQQTGAYGIAFLISVI 239 + D GR TP W+ L +V E +GFSY+L + G SEN +Q + I F++ VI Sbjct: 98 AHDLGRSPTPGWMMGLLCVLVLAEGLGFSYMLGTWMAGEGGSENARQLLMWAIVFVLCVI 157 Query: 240 LVAFTHLAGHELYKSERVNLARRQWNEAGRKQELFTGTIPLARPQSSDDHKPTFTQLCNR 299 V H AGH+LY+S + A +W G+ + + + L PQ+ DD +P + Q NR Sbjct: 158 FVFVMHSAGHQLYRSNLIAKADSEWRGEGQPGKFASHNVKLNDPQNKDDAEPEYKQCVNR 217 Query: 300 VGSHPSYKITVLTVIFVLLVASLATYVRGQVLERELEARVTL--SSNQAGNAARSAAGSL 357 VG+ SY + + V+ ++ V+ L+T +R + LE E A+ L AGN +L Sbjct: 218 VGTSRSYFMVGVAVVIIVFVSVLSTVMRVKHLEAERTAQTALVVEGPSAGNPFDKLGQAL 277 Query: 358 DMSATNVRLPADDDAANRAADRKAVSDEADIDRHGGWATFIVLAFVFVFLQILGVIFGYR 417 + ADD A ++ R A +DE G A F++LAF+F Q++G+ GY+ Sbjct: 278 PAELMQEQQKADDKA--KSDGRSAYTDE-------GLAAFLMLAFIFAITQLVGIAGGYK 328 Query: 418 WGFAGENSAEAYRDIGSGRYSSYSAVREHYRRIADTAQASLATLQQKMMMHNSTHGTSGQ 477 WGFAG+ S AYR G+ +S+Y + + AQ+ L TLQQKM + G + Sbjct: 329 WGFAGKESKAAYR--GTRGFSTYDDYLAFFTPLMQVAQSKLQTLQQKMSERRANDGLRLE 386 Query: 478 HLSKTFRDFMQQTRLADAAERQSERDFAQTVAAQQATPLHVPAHPAAAAAPVAAPAVVAV 537 H TF D++ + R + AA+ A P A AP A Sbjct: 387 H---TFDDYLTEAR----------ESRTRVAAARNA--------PQADIAPAAQ------ 419 Query: 538 AAVVQAPAAPAGTDSLPDVMARLDALG-EDKEAKK-KLMAQLPEALNMAVREEL------ 589 PA A + V+AR+DA+ E ++A L+ LP+++ V L Sbjct: 420 ----SQPAMDASS-----VLARIDAMTVEGRKADAVALLQDLPDSVRNEVTARLAERKAA 470 Query: 590 --KRRKDERERKAREADAELEDLL 611 + RKDE ER A LE LL Sbjct: 471 QEQARKDEEERNKEAERARLEALL 494 >ref|ZP_04583635.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gb|EEO25513.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 513 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 146/394 (37%), Positives = 222/394 (56%), Gaps = 49/394 (12%) Query: 93 LAAWSVVSVLMAAVVIMTLW---------------EQVKWWWFNTWVRFPLAGRIARLSR 137 + AW +++ L+A +++ +L+ V +WW N FP G IAR+S Sbjct: 4 ILAWIMLNKLLAGLIMASLFLVLLIALYAFNKAFRNAVNFWWLNFKTDFPAIGTIARVST 63 Query: 138 DLNEDSSLPGWHKGESTLCLEYKKFI--HIQDEHDFNEKVTYLTKSGDNGRKATPNWIWL 195 + S W E+ LC +Y + I+D +N+ V+YL K G+ GR TP +IW+ Sbjct: 64 NDAAIQSNTIWRDCETNLCYKYLDYYDREIEDPEYYNKCVSYLRKIGEQGRSPTPFFIWI 123 Query: 196 LTISMVFVEAMGFSYVLAGYTLPGASENLQQTGAYGIAFLISVILVAFTHLAGHELYKSE 255 + + +V EA+GF+YVLAGYT+PGASE+LQQ GA GIAF+IS +LV TH AG E+YK+ Sbjct: 124 VILGLVVAEALGFAYVLAGYTIPGASESLQQKGAIGIAFVISALLVFLTHSAGGEIYKNS 183 Query: 256 RVN--LARRQWNEAGRKQELFTGTIPLARPQSSDDHKPTFTQLCNRV--GSHPSYKITVL 311 + L R N+ +++ + DD+ P++ Q NR G ++ ++++ Sbjct: 184 VIGRILQNRGDNDLIKEEVDI-------QSDHKDDNAPSWQQAYNRFNGGDSKTWILSIV 236 Query: 312 TVIFVLLVASLATYVRGQVLERELEARVTLSSNQAGNAARSAAGSLDMSATNVRLPADDD 371 T IF+++VA ATYVRGQVLE++L V+ +S + A PA+ Sbjct: 237 TTIFIIIVAIGATYVRGQVLEKQLIQEVSTASISIYDTA----------------PAELG 280 Query: 372 AANRAADRKAVSDEADIDRHGGWATFIVLAFVFVFLQILGVIFGYRWGFAGENSAEAYRD 431 AD KA+ ++ + DR GGWATFIVLA +F+F+QILG++FGY+WGFAG+NS +AY Sbjct: 281 EIQSNADAKALQEQQEADRKGGWATFIVLAVLFIFIQILGILFGYKWGFAGKNSGDAYE- 339 Query: 432 IGSGRYSSYSAVREHYRRIADTAQASLATLQQKM 465 S R+ + RE+ I +A A +K+ Sbjct: 340 -ASHRFRT---AREYQNYITQKRRAITAKANEKL 369 >ref|YP_004683878.1| hypothetical protein CNE_1c00280 [Cupriavidus necator N-1] gb|AEI75397.1| hypothetical protein CNE_1c00280 [Cupriavidus necator N-1] Length = 501 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 166/494 (33%), Positives = 249/494 (50%), Gaps = 33/494 (6%) Query: 121 NTWVRFPLAGRIARLSRDLNEDSSLPGWHKGESTLCLEYKKFIHIQDEHDFNEKVTYLTK 180 N W PL G+IARLSRD + W E TLC +YK+FIH E +FN+++TYL+K Sbjct: 38 NLWYSLPLIGKIARLSRDTTRFAKDKSWTLSERTLCDDYKQFIHFTTEDEFNKRLTYLSK 97 Query: 181 SGDNGRKATPNWIWLLTISMVFVEAMGFSYVLAGYTL-PGASENLQQTGAYGIAFLISVI 239 + D GR TP W+ L +V E +GFSY+L + G SEN +Q + I F++ VI Sbjct: 98 AHDLGRSPTPGWMMGLLCVLVLAEGLGFSYMLGTWMAGEGGSENARQLLMWAIVFVLCVI 157 Query: 240 LVAFTHLAGHELYKSERVNLARRQWNEAGRKQELFTGTIPLARPQSSDDHKPTFTQLCNR 299 V H AGH+LY+S + A +W G+ + + I L PQ DD +P + Q NR Sbjct: 158 FVFVMHSAGHQLYRSNLIAKADSEWRGEGQPGKFASHNIKLNDPQDKDDAEPEYKQSVNR 217 Query: 300 VGSHPSYKITVLTVIFVLLVASLATYVRGQVLERELEARVTLSSN--QAGNAARSAAGSL 357 VG+ SY + + V+ ++ V+ ++T +R + LE E A+ L + AGN +L Sbjct: 218 VGTSRSYFMVGVAVVIIVFVSIVSTVMRVKHLETERTAQTALVAEGPGAGNPFDKLGQAL 277 Query: 358 DMSATNVRLPADDDAANRAADRKAVSDEADIDRHGGWATFIVLAFVFVFLQILGVIFGYR 417 + ADD A +A A +DE G A F++LAF+F Q++G+ GY+ Sbjct: 278 PAELAQEQQKADDQA--KADGHAAYADE-------GLAAFLMLAFIFAITQLVGIAGGYK 328 Query: 418 WGFAGENSAEAYRDIGSGRYSSYSAVREHYRRIADTAQASLATLQQKMMMHNSTHGTSGQ 477 WGFAG+ S AYR G+ +S+Y + + AQ+ L TLQQKM + G + Sbjct: 329 WGFAGKESKAAYR--GTRGFSTYDDYLAFFTPLMQVAQSKLQTLQQKMSERRANDGLRLE 386 Query: 478 HLSKTFRDFMQQTRLADAAERQSERDFAQTVAAQQATPLHVPAHPAAAAAPVAAPAVVAV 537 H F D++ + R E ++ A+ V+ P V + PA A V A + A+ Sbjct: 387 H---AFDDYLMEAR-----ESRTRVAAARNVSQADIAPA-VESLPATDTASVLA-RIDAM 436 Query: 538 AAVVQAPAAPAGTDSLPDVMARLDALGEDKEAKKKLMAQLPEALNMAVREELKRRKDERE 597 A + A A SLPD + R D + E K A E+ ++ ++E++ Sbjct: 437 TAAGRKADAVALLQSLPDSV-RNDVTAQLAERKAAQEAA------RLAAEQARKAEEEQD 489 Query: 598 RKAREADAELEDLL 611 ++A A LE LL Sbjct: 490 KEAER--ARLEALL 501 >ref|YP_001358605.1| hypothetical protein SUN_1295 [Sulfurovum sp. NBC37-1] dbj|BAF72248.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 451 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 144/422 (34%), Positives = 222/422 (52%), Gaps = 45/422 (10%) Query: 108 IMTLWEQVKWWWFNTWVRFPLAGRIARLSRDLNEDSSLPGWHKGESTLCLEYKKFIHI-- 165 I+T W++VK+WW N FP+ G+++ L++D+ W E LC +Y F Sbjct: 28 IITHWQEVKFWWLNFTYNFPVIGKLSVLAKDIEGFDEKHKWFYSEERLCRDYYNFYEKVD 87 Query: 166 QDEHDFNEKVTYLTKSGDNGRKATPNWIWLLTISMVFVEAMGFSYVLAGYTLPGASENLQ 225 +D ++E YL +G+ GRK TP +IW++ +V VEA GF+YVLAG+T+PGASE Q Sbjct: 88 KDSESYDEAKEYLHAAGELGRKPTPTFIWIMIFVLVIVEAFGFAYVLAGFTIPGASEATQ 147 Query: 226 QTGAYGIAFLISVILVAFTHLAGHELYKSERVNLARRQW---NEAGRK-QELFTGTIPLA 281 Q GA G+A +++++LV TH+ G EL+K+ + RR + N G ++L ++ Sbjct: 148 QKGAIGVAAMLAILLVWLTHMTGQELHKNTLIKKIRRWYKNDNAGGSNWRDLKPDEQLIS 207 Query: 282 RPQSSDDH-KPTFTQLCNRVGSH----PSYKITVLTVIFVLLVASLATYVRGQVLEREL- 335 + DD P + ++ NR+ + +Y T+LT+IF+ VA ATY+R QVL +E+ Sbjct: 208 IDNTFDDSTSPNYIRMLNRLDVNDKVKTTYTKTILTLIFIFAVAIGATYIRHQVLTQEIA 267 Query: 336 ----EARVTLSSNQAGNAARSAAGSLDMSAT------------NVRLPADDDA--ANRAA 377 A + + + A +AGS D T ++ D+A A A Sbjct: 268 SSHETAMNIFNEDASPFAGAESAGSDDDIGTLFGDDAAADAKEDLSSLFGDNAKDATAPA 327 Query: 378 DRKAVSDEADIDRHGGWATFIVLAFVFVFLQILGVIFGYRWGFAGENSAEAY---RDIGS 434 ++ + E + ++ GG ATFIVL +F+F+QILG+ FG W FAG S EAY R + Sbjct: 328 EKNTAAIEDETNQKGGDATFIVLGLMFIFIQILGIFFGMHWDFAGRESKEAYECLRGFAT 387 Query: 435 GR--YSSYSAVREHYRRIADTAQASLATLQQKMMMHNSTHGTSGQHLS-------KTFRD 485 + S Y V+ H IA AQ L LQ KM + N GT + + +TFR Sbjct: 388 KKAFLSYYDRVKTH---IARVAQQQLQKLQHKMNIINDNTGTDAETTALLRNNKERTFRQ 444 Query: 486 FM 487 ++ Sbjct: 445 YL 446