BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0679.p (626 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134] >gi|72117142|g... 250 4e-64 ref|YP_004683877.1| OmpA protein [Cupriavidus necator N-1] >gi|3... 229 8e-58 gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobac... 164 5e-38 ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicoba... 125 2e-26 ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella... 107 6e-21 >ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134] gb|AAZ59405.1| OmpA [Ralstonia eutropha JMP134] Length = 591 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 197/435 (45%), Positives = 260/435 (59%), Gaps = 29/435 (6%) Query: 99 AIGASFVSGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGALLGRQVGGDNK- 157 A+ S V+GCA P KETFASDDPCS NARNIGI G +AGA+LG V + K Sbjct: 34 AVACSMVTGCATAPGG---YLKETFASDDPCSNNARNIGITAGAIAGAVLGNVVSSNKKV 90 Query: 158 GLLVGAALGGVIGGLIGNDMDKRRCELSKIAKQYQLDLQITALDNKGEAITTTDSAKAKQ 217 G L+GA +G +GGLIG DMD+RRCELS+IAK++ LD+ + + G A+ + A ++Q Sbjct: 91 GTLLGAGVGAALGGLIGADMDRRRCELSRIAKKHGLDVTMVDIAADGSAMEPANRA-SEQ 149 Query: 218 ETAGSVVEVRDP-AGAGGHFESNSDQLTARARDYFTAIAATYDIRKSAAEI--QDSNLRK 274 G V VRD AGA G F S S LT AR FT IA Y + ++ Q + + Sbjct: 150 GGIGLSVSVRDSGAGANGQFASGSSVLTPEARVAFTEIAQQYAYPVQSRQLGPQSTPQDR 209 Query: 275 QYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFY 334 Q +E + R++LL+GHTDDTGSSRLNADLSE+RARAV+ ++ GV + LY+QGAGE Sbjct: 210 QAVEGLKSRRILLIGHTDDTGSSRLNADLSEQRARAVAALFRDAGVAESQLYYQGAGETM 269 Query: 335 PIASNDTEDGRSRNRRVEIVELSDKASFDNYLAARRPRVEFYRQEKSDAPTVAQSGASTG 394 P+A N E GR++NRRVEIV+++D+A+F YLAARRP V FYR+ SD +QSG Sbjct: 270 PLADNRDEAGRAKNRRVEIVDVTDEAAFAKYLAARRPNVAFYRESASDP---SQSGRDNI 326 Query: 395 VTAAAATQGVPRTHAATSAKNNTARTTRSADVVAKDNRNDGKGDAVATAPAPK----TSA 450 +A + A+ AK + T SA ++R + G VA APA + T++ Sbjct: 327 AVSAPRAKSASSARASGQAKAQSPVRTASA-----NSRQNESGGDVAKAPAGERPVATAS 381 Query: 451 SAPAANAPAS--ASTRKAALPDSGDWIDFGGTPLIASSDTAAIGKVEGKRPFFSLISPAY 508 APA + + STR P IDFGGTP S+ +GK++ + SLIS A Sbjct: 382 PAPATTSKPNVETSTRTVRAPS----IDFGGTPSGRSAMMPDLGKLD-RSGGLSLISSAV 436 Query: 509 ADEPPVLADCTRDRP 523 AD P LA C +DRP Sbjct: 437 ADTP--LARCDQDRP 449 >ref|YP_004683877.1| OmpA protein [Cupriavidus necator N-1] gb|AEI75396.1| OmpA protein [Cupriavidus necator N-1] Length = 595 Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 191/435 (43%), Positives = 255/435 (58%), Gaps = 25/435 (5%) Query: 99 AIGASFVSGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGALLGRQVGGDNK- 157 A+ S V+GCA P KETFASDDPCS NARNIGI GV+AGA+LG V + K Sbjct: 34 AVACSMVTGCATAPGA---YLKETFASDDPCSNNARNIGIAAGVIAGAVLGNVVSSNKKV 90 Query: 158 GLLVGAALGGVIGGLIGNDMDKRRCELSKIAKQYQLDLQITALDNKGEAITTTDSAKAKQ 217 G L+GA +G +GGLIG DMD+RRCELS+IAK++ LD+ + + G A+ + +Q Sbjct: 91 GTLLGAGVGAALGGLIGADMDRRRCELSRIAKKHGLDVTVVDIAADGSALAPATRDR-EQ 149 Query: 218 ETAGSVVEVRDPAGAGG--HFESNSDQLTARARDYFTAIAATYDIRKSAAEI--QDSNLR 273 G V VRD AG GG F S S L AR FT IA Y A + + + Sbjct: 150 GGLGMSVSVRD-AGTGGSSQFASGSSVLAPDARVAFTEIAQQYAYAAQARMLGPKSTTQE 208 Query: 274 KQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEF 333 +Q +E + R++LL+G+TDDTGSSRLNA+LSE+RARAV+ ++ GV + LY+QGAGE Sbjct: 209 RQAVEALKSRRILLIGNTDDTGSSRLNAELSEQRARAVAALFRDAGVTESQLYYQGAGET 268 Query: 334 YPIASNDTEDGRSRNRRVEIVELSDKASFDNYLAARRPRVEFYRQEKSDAPTVAQSGAST 393 P+A N E GR++NRRVEIV+++D+++F YLAARRP V FYR+ +D QSG + Sbjct: 269 MPLADNRDETGRAKNRRVEIVDVTDESAFAKYLAARRPNVAFYRESAADR---TQSGRDS 325 Query: 394 GVTAAAATQGVPRTHAATSAKNNTARTTRSADVVAKDNRNDGKGDAVATAPAPKTSASAP 453 G A A Q T A + T R+A A + D + DAV PA ++ Sbjct: 326 G-EANGAAQKKSATTARAGDRPKTQSPVRTAS-AASPRQGDARSDAVKV-PAGDRPVTSA 382 Query: 454 AANAPASASTRKAALPD----SGDWIDFGGTPLIASSDTAAIGKVEGKRPF-FSLISPAY 508 +A A + + ++ + S IDFGGTP S +GK++ RP F+LIS A Sbjct: 383 SATASPAPAQKQGPVTQTRIVSAPSIDFGGTPSGRSVMVPDLGKLD--RPTGFALISSAV 440 Query: 509 ADEPPVLADCTRDRP 523 AD P LA C +DRP Sbjct: 441 ADTP--LARCDQDRP 453 >gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobacter xylosoxidans C54] Length = 495 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 187/360 (51%), Gaps = 52/360 (14%) Query: 173 IGNDMDKRRCELSKIAKQYQLDLQITAL---DNKGEAITTTD-----SAKAKQETAGSVV 224 IG+++D+RRC L K+A+ LDL ++ + D + + + T SA A + TAG V Sbjct: 39 IGHNIDERRCALFKVAQANNLDLVVSDIKVADTQVDPLATPKPQGGGSADAAKTTAGLSV 98 Query: 225 EVRDPAGAGGHFESNSDQLTARARDYFTAIAATY-DIRKSAAEIQDSNLRKQYLEKMAQR 283 + D G F S LT +A +A TY D+ ++A +D + M Sbjct: 99 SIID---KGEQFAPGSAILTPQAAKAMADLADTYRDVAAASASAKDRDAVNARNNAM--- 152 Query: 284 KLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTED 343 ++LLVGHTDDTGSS+LNADLSE RARAV++ G A +++QGAGE PIA N + Sbjct: 153 RILLVGHTDDTGSSQLNADLSEARARAVAKIFVSRGFRADQIFYQGAGETLPIADNHSAA 212 Query: 344 GRSRNRRVEIVELSDKASFDNYLAARRPRVEFYRQEKSDAPTVAQSGASTGVTAAAATQG 403 GR+RNRRVE+V+L + + YLA R+P + +YR P A SG Sbjct: 213 GRARNRRVEVVDLGEDEAMAGYLANRKPVLAYYR-----TPGPAASG------------- 254 Query: 404 VPRTHAATSAKNNTARTTRSADVVAKDNRNDGKGDAVATAPAPKTSASAPAANAPASAST 463 PR A+ ++R V + NRND A +P P + + P+A+A +A Sbjct: 255 -PRKETTGGAQPTSSRKAS----VGQANRNDRPSVA---SPDPSATDATPSAHASTAAQD 306 Query: 464 RKAALPDSGDWIDFGGTPLIASSDTAAIGKVEGKRPFFSLISPAYADEPPVLADCTRDRP 523 IDFGGTP+ + +IGK+ ++ FSL+S A+A EP ++ C DRP Sbjct: 307 -----------IDFGGTPVHGNYVQVSIGKLSTQKSTFSLLSTAHAAEPSIVGSCADDRP 355 >ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] gb|EEO25512.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] Length = 466 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 154/317 (48%), Gaps = 61/317 (19%) Query: 129 CSQNARNIG--------IGVGVLAGALLGRQVGGDNKGLLVGAALGGVIGGLIGND---- 176 C+ N +NIG + VG GA++G+QV G N G LVGA +G + GG+ G Sbjct: 19 CAINQQNIGKVSGTAGGVLVGAGTGAIIGKQVSG-NSGALVGAGIGAIAGGIAGFFIGDY 77 Query: 177 MDKRRCELSKIAKQYQLDLQITALDNKGEAITTTDSAKAKQETAGSVVEVRDPAGAGGHF 236 +DKRR E KI++ + ++ + D K K + V ++D F Sbjct: 78 IDKRRAEQRKISEAKNVKIEFENIKK--------DGTKQKNDK----VIIKD----NNQF 121 Query: 237 ESNSDQLTARARDYFTAIAATYDIRKSAAEIQDSNLRKQYLEKMAQRKLLLVGHTDDTGS 296 +S S L A+DY+T IA TY ++ +K+L+VGHTDDTG+ Sbjct: 122 KSASSTLNPNAKDYYTQIAKTYQVK--------------------DKKILIVGHTDDTGN 161 Query: 297 SRLNADLSERRARAVSRFMQEHGVPAASLYFQGAGEFYPIASNDTEDGRSRNRRVEIVEL 356 S N LSE+RARAV + ++GV ++Y+QGAG P A N+TE GR+ NRRVEI+EL Sbjct: 162 SAFNQKLSEKRARAVGKVFAQNGVSTKNIYYQGAGSTQPKADNNTEKGRAENRRVEIIEL 221 Query: 357 SDKASFDNYLAARRPRVEFYRQEKSDAPTVAQSGASTGVTAAAATQGVPRTHAATSAKNN 416 ++A Y + +F + K + V + + + T A TS K++ Sbjct: 222 DNEADVALYTSQNITNTKFLTKTKKE------------VMQKTSQKSLKETLAQTSKKDS 269 Query: 417 TARTTRSADVVAKDNRN 433 T+ D ++N Sbjct: 270 KLPITQGMDFGGIKSKN 286 >ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gb|ABI41844.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 514 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 124/439 (28%), Positives = 191/439 (43%), Gaps = 83/439 (18%) Query: 96 LVAAIGASFVSGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGALLGRQVGGD 155 +VA A +S CAV + + KET IG +G GAL+G +GG Sbjct: 11 VVAVTSALLLSSCAVTQSV--ENNKETV------------IGCAIGTGIGALIGNYIGG- 55 Query: 156 NKGLLVGAALGGVIGGLIGNDMDKRRCELSKIAKQYQLDLQITALDNKGEAITTTDSAKA 215 +G+ GAA G IG +G D K+R L +AK LD+Q T++ + S A Sbjct: 56 KEGMAYGAAAGAAIGCTVGYDFQKKREALEALAKTENLDIQFTSI---------SASTNA 106 Query: 216 KQETAGSVVEVRDPAGAGGHFESNSD-QLTARARDYFTAIAATYDIRKSAAEIQDSNLRK 274 + ++ + A + E SD Q+ A I++T ++ + + + K Sbjct: 107 DNQQNSLLISANNQAMSKEDQEKYSDYQVVGMA----ATISSTDEMMFGSGSAEATAQAK 162 Query: 275 QYLEKMA------QRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVPAASLYFQ 328 Q L+K+A ++ +L+ GHTD +GS LN LSE RAR V+ + G+P L+FQ Sbjct: 163 QKLQKLAAIYKDSKQNILITGHTDASGSESLNQTLSEARARYVATLFNQAGIPTERLFFQ 222 Query: 329 GAGEFYPIASNDTEDGRSRNRRVEIVELSDKASFDNYLAARRPRVEFYRQEKSDAPTVAQ 388 GAGE P+A+N E G+++NRRVEIVE+ K + LA + ++K++ +++ Sbjct: 223 GAGESQPVAANTNETGKAKNRRVEIVEIEGKP--EQLLA-------YSNKQKTNLSYLSR 273 Query: 389 SGASTGVTAAAATQGVPRTHAATSAKNNTARTTRSADVVAKDNRNDGKGDAVATAPAPKT 448 R+ + + T +S DV +KD A T Sbjct: 274 -----------------RSQDKVATVKPSETTAKSVDVASKD--------------AQIT 302 Query: 449 SASAPAANAPASASTRKAALPDSGDWIDFGGTPLIASSDTAAIGKVEGKRPFFSLISPAY 508 + A +KA +DFGG + S A K F+L S AY Sbjct: 303 MTQSEMVQLIEPAKQQKAL-------VDFGGQKMTDPSTNFAQLVGTKKESGFALFSNAY 355 Query: 509 ADEPPVLADCTRDRPGGGG 527 A E L +C + P G Sbjct: 356 ASEISSL-NCAVEGPRVAG 373