BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0677.p         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001098619.1| putative thiamine biosynthesis protein ThiS ...    88   5e-16
ref|YP_001098691.1| ThiS protein [Herminiimonas arsenicoxydans] ...    77   7e-13
emb|CAL60490.2| Thiamine biosynthesis protein ThiS [Herminiimona...    76   1e-12
ref|ZP_08273525.1| ThiS protein [Oxalobacteraceae bacterium IMCC...    69   3e-10
ref|YP_001352006.1| thiamine biosynthesis protein ThiS [Janthino...    69   3e-10

>ref|YP_001098619.1| putative thiamine biosynthesis protein ThiS [Herminiimonas
           arsenicoxydans]
          Length = 129

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 51/66 (77%)

Query: 1   MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSVQWPARTLAEADKVDVV 60
           M+IELNG  H LP    +++LIAGLSLAGKAVAVA+NR++VP   W  R L  AD+VDVV
Sbjct: 64  MEIELNGAAHQLPANQNVEELIAGLSLAGKAVAVAINREIVPRSAWAQRQLQAADRVDVV 123

Query: 61  RAIGGG 66
           RAIGGG
Sbjct: 124 RAIGGG 129


>ref|YP_001098691.1| ThiS protein [Herminiimonas arsenicoxydans]
 emb|CAL60562.1| Thiamine biosynthesis protein ThiS [Herminiimonas arsenicoxydans]
          Length = 66

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 50/66 (75%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSVQWPARTLAEADKVDVV 60
          M+IELNG PH +     +++LIAGLSL+ KAVAVA+NR++VP  QW  R L   D+VDVV
Sbjct: 1  MKIELNGSPHQIEAHKNVEELIAGLSLSDKAVAVAINREIVPRHQWLQRQLRATDRVDVV 60

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 61 RAIGGG 66


>emb|CAL60490.2| Thiamine biosynthesis protein ThiS [Herminiimonas arsenicoxydans]
          Length = 66

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 51/66 (77%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSVQWPARTLAEADKVDVV 60
          M+IELNG  H LP    +++LIAGLSLAGKAVAVA+NR++VP   W  R L  AD+VDVV
Sbjct: 1  MEIELNGAAHQLPANQNVEELIAGLSLAGKAVAVAINREIVPRSAWAQRQLQAADRVDVV 60

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 61 RAIGGG 66


>ref|ZP_08273525.1| ThiS protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33007.1| ThiS protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 72

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 48/66 (72%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSVQWPARTLAEADKVDVV 60
          ++IELNG PH +  G  L +LI  L+LA +++AVAVNR++VP   W  R LA  D+VDVV
Sbjct: 7  IEIELNGAPHRIAPGWHLQELIDALALANQSLAVAVNREIVPRHLWRERALASRDRVDVV 66

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 67 RAIGGG 72


>ref|YP_001352006.1| thiamine biosynthesis protein ThiS [Janthinobacterium sp.
          Marseille]
 gb|ABR91683.1| thiamine biosynthesis protein ThiS [Janthinobacterium sp.
          Marseille]
          Length = 67

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 48/66 (72%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSVQWPARTLAEADKVDVV 60
          ++IELNG    +  G  +  LIA LSL+GKAVAVA+NR++VP  QW  R L  AD++D+V
Sbjct: 2  LEIELNGAMRQVESGQNVADLIAELSLSGKAVAVAINREIVPRGQWAERQLQAADRIDIV 61

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 62 RAIGGG 67