BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0676.p         (318 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773861.1| thiamine (thiazole ring) biosynthesis protei...   487   e-136
ref|ZP_04579634.1| thiamine biosynthesis protein [Oxalobacter fo...   448   e-124
ref|ZP_04577481.1| thiamine biosynthesis protein [Oxalobacter fo...   446   e-123
ref|YP_001352007.1| thiamine biosynthesis protein [Janthinobacte...   443   e-122
ref|YP_001352076.1| thiamine biosynthesis protein [Janthinobacte...   440   e-121

>ref|YP_003773861.1| thiamine (thiazole ring) biosynthesis protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61953.1| thiamine (thiazole ring) biosynthesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score =  487 bits (1254), Expect = e-136,   Method: Composition-based stats.
 Identities = 262/269 (97%), Positives = 267/269 (99%)

Query: 50  MNMNDAPLLSEDKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNI 109
           MNMNDAPL++EDKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNI
Sbjct: 1   MNMNDAPLVNEDKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNI 60

Query: 110 GQDPNAPSLLDAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKT 169
           GQDPNAPSLLDAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKT
Sbjct: 61  GQDPNAPSLLDAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKT 120

Query: 170 LFPNMPETLKAAETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNP 229
           LFPNMPETLKAAETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNP
Sbjct: 121 LFPNMPETLKAAETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNP 180

Query: 230 WNLSLIIEQARVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPVRMARAMKLAV 289
           WNLSLIIEQARVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIA ARDP+RMARAMKLAV
Sbjct: 181 WNLSLIIEQARVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIACARDPIRMARAMKLAV 240

Query: 290 EAGREAFLAGRIARKFAASPSSPMAGRVA 318
           +AGREAFL+GRI RKFAASPSSPMAGRVA
Sbjct: 241 QAGREAFLSGRIPRKFAASPSSPMAGRVA 269


>ref|ZP_04579634.1| thiamine biosynthesis protein [Oxalobacter formigenes OXCC13]
 gb|EEO30607.1| thiamine biosynthesis protein [Oxalobacter formigenes OXCC13]
          Length = 263

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 233/258 (90%), Positives = 247/258 (95%)

Query: 60  EDKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPSLL 119
           +D+GL IAGKTY SRLLVGSGKYKDLD+TR AT ASGA IITVAIRRVNIGQDPNAPSLL
Sbjct: 4   QDQGLLIAGKTYSSRLLVGSGKYKDLDQTREATEASGANIITVAIRRVNIGQDPNAPSLL 63

Query: 120 DAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPETLK 179
           DAVPPS++TILPNTAGCYNA DAVYTLQLARELL GHKLVKLEVLGDEKTLFPNMPETLK
Sbjct: 64  DAVPPSKYTILPNTAGCYNAEDAVYTLQLARELLDGHKLVKLEVLGDEKTLFPNMPETLK 123

Query: 180 AAETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIIEQA 239
           AAE LVKDGFDVMVYCSDDPIQA+MLED+G AA+MPLASLIGSGMGILNPWNLSLIIEQ 
Sbjct: 124 AAEILVKDGFDVMVYCSDDPIQAKMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIEQT 183

Query: 240 RVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPVRMARAMKLAVEAGREAFLAG 299
           +VPV+VDAGVGTASDAAIAMELGCDG+LMNTAIAGA+DP+RMARAMKLAVEAGREAFLAG
Sbjct: 184 KVPVIVDAGVGTASDAAIAMELGCDGILMNTAIAGAQDPIRMARAMKLAVEAGREAFLAG 243

Query: 300 RIARKFAASPSSPMAGRV 317
           RI RKFAASPSSPMAGR+
Sbjct: 244 RIPRKFAASPSSPMAGRI 261


>ref|ZP_04577481.1| thiamine biosynthesis protein [Oxalobacter formigenes HOxBLS]
 gb|EEO28443.1| thiamine biosynthesis protein [Oxalobacter formigenes HOxBLS]
          Length = 262

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 230/259 (88%), Positives = 250/259 (96%)

Query: 60  EDKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPSLL 119
           +++GLTIAGKTYRSRLLVGSGKY+DL++TR AT ASGAEIITVAIRRVNIGQDPNAPSLL
Sbjct: 4   QEQGLTIAGKTYRSRLLVGSGKYRDLEQTREATEASGAEIITVAIRRVNIGQDPNAPSLL 63

Query: 120 DAVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPETLK 179
           D VPP+++TILPNTAGCYNA DAVYTLQLARELL GHKLVKLEVLG+EKTLFPNMPETLK
Sbjct: 64  DVVPPTKYTILPNTAGCYNAEDAVYTLQLARELLNGHKLVKLEVLGNEKTLFPNMPETLK 123

Query: 180 AAETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIIEQA 239
           AAE LVKDGFDVMVYCSDDP+QA+MLED+G AA+MPLASLIGSGMGILNPWNLSLIIEQ+
Sbjct: 124 AAEILVKDGFDVMVYCSDDPVQAKMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIEQS 183

Query: 240 RVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPVRMARAMKLAVEAGREAFLAG 299
            VPV+VDAGVGTASDAAIAMELGCDG+LMNTAIAGA+DP+RMARAMKLAVEAGREAFLAG
Sbjct: 184 SVPVIVDAGVGTASDAAIAMELGCDGILMNTAIAGAKDPIRMARAMKLAVEAGREAFLAG 243

Query: 300 RIARKFAASPSSPMAGRVA 318
           RI RKFAASPSSPMAGR+A
Sbjct: 244 RIPRKFAASPSSPMAGRIA 262


>ref|YP_001352007.1| thiamine biosynthesis protein [Janthinobacterium sp. Marseille]
 gb|ABR88467.1| thiamine biosynthesis protein [Janthinobacterium sp. Marseille]
          Length = 289

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 227/257 (88%), Positives = 246/257 (95%)

Query: 61  DKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPSLLD 120
           D  LTIAG TYRSRLLVGSGKYKDL++TRAA+ ASGA+I+TVAIRRVNIGQDPNAPSLLD
Sbjct: 32  DDQLTIAGTTYRSRLLVGSGKYKDLEQTRAASEASGAQIVTVAIRRVNIGQDPNAPSLLD 91

Query: 121 AVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPETLKA 180
            +PPSE+T+LPN+AGCYNAADAVYTLQL RE+LGGHKL KLEVLGDEKTLFPNMPETLKA
Sbjct: 92  VLPPSEYTLLPNSAGCYNAADAVYTLQLGREILGGHKLCKLEVLGDEKTLFPNMPETLKA 151

Query: 181 AETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIIEQAR 240
           AETLVKDGFDVMVYCSDDPIQARMLED+G AA+MPLASLIGSGMGILNPWNLSLIIEQ++
Sbjct: 152 AETLVKDGFDVMVYCSDDPIQARMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIEQSK 211

Query: 241 VPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPVRMARAMKLAVEAGREAFLAGR 300
           VPV+VDAGVGTASDAAIAMELGCDGVLMNTAIAGA+DPVRMA AMKL ++AGR A+LAGR
Sbjct: 212 VPVIVDAGVGTASDAAIAMELGCDGVLMNTAIAGAQDPVRMAHAMKLGIDAGRNAYLAGR 271

Query: 301 IARKFAASPSSPMAGRV 317
           IARKFAASPSSPMAGRV
Sbjct: 272 IARKFAASPSSPMAGRV 288


>ref|YP_001352076.1| thiamine biosynthesis protein [Janthinobacterium sp. Marseille]
 gb|ABR89449.1| thiamine biosynthesis protein [Janthinobacterium sp. Marseille]
          Length = 265

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/257 (88%), Positives = 247/257 (96%)

Query: 61  DKGLTIAGKTYRSRLLVGSGKYKDLDETRAATVASGAEIITVAIRRVNIGQDPNAPSLLD 120
           D+ LTIAG TYRSRLLVGSGKYKDL++TRAA+ ASGA+I+TVAIRRVNIGQDPNAPSLLD
Sbjct: 8   DEQLTIAGTTYRSRLLVGSGKYKDLEQTRAASEASGAQIVTVAIRRVNIGQDPNAPSLLD 67

Query: 121 AVPPSEFTILPNTAGCYNAADAVYTLQLARELLGGHKLVKLEVLGDEKTLFPNMPETLKA 180
            +PPSE+T+LPN+AGCYNAADAVYTLQL RE+LGGHKL KLEVLGDEKTLFPNMPETLKA
Sbjct: 68  VLPPSEYTLLPNSAGCYNAADAVYTLQLGREILGGHKLCKLEVLGDEKTLFPNMPETLKA 127

Query: 181 AETLVKDGFDVMVYCSDDPIQARMLEDLGVAAVMPLASLIGSGMGILNPWNLSLIIEQAR 240
           AETLVKDGFDVMVYCSDDPIQARMLED+G AA+MPLASLIGSGMGILNPWNLSLIIEQ++
Sbjct: 128 AETLVKDGFDVMVYCSDDPIQARMLEDIGCAAIMPLASLIGSGMGILNPWNLSLIIEQSK 187

Query: 241 VPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPVRMARAMKLAVEAGREAFLAGR 300
           VPV+VDAGVGTASDAAIAMELGCDGVLMNTAIAGA+DPVRMA AMKL ++AGR A+LAGR
Sbjct: 188 VPVIVDAGVGTASDAAIAMELGCDGVLMNTAIAGAQDPVRMAHAMKLGIDAGRNAYLAGR 247

Query: 301 IARKFAASPSSPMAGRV 317
           IARKFAASPSSPMAGRV
Sbjct: 248 IARKFAASPSSPMAGRV 264