BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0675.p         (219 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773862.1| phosphomethylpyrimidine kinase [Herbaspirill...   275   5e-72
ref|YP_004751374.1| phosphomethylpyrimidine kinase [Collimonas f...   181   5e-44
ref|ZP_08276013.1| Phosphomethylpyrimidine kinase [Oxalobacterac...   162   2e-38
ref|ZP_04579633.1| phosphomethylpyrimidine kinase [Oxalobacter f...   156   2e-36
ref|ZP_04577480.1| phosphomethylpyrimidine kinase [Oxalobacter f...   140   1e-31

>ref|YP_003773862.1| phosphomethylpyrimidine kinase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61954.1| phosphomethylpyrimidine kinase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 288

 Score =  275 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 150/160 (93%), Positives = 151/160 (94%), Gaps = 3/160 (1%)

Query: 1   MQAAYRSTPPCVLVFSGSDPSGGAGMQADIPAITALGAHPLSVPTALTVQDNVSVFAVHA 60
           MQAAYRSTPPCVLVFSGSDPSGGAGMQADIPAITALG HPLSVPTALTVQDNVSVFAVHA
Sbjct: 1   MQAAYRSTPPCVLVFSGSDPSGGAGMQADIPAITALGCHPLSVPTALTVQDNVSVFAVHA 60

Query: 61  LDPELVRHQAQVLIDRFDIAAVKLGIAGSRENAEVIAGLIRQLRARDPHLPVVLDPVLAN 120
           LDPELVRHQAQVLIDRFDIAAVKLGIAGSRENAEVIA LIRQLR R+P LPVVLDPVLAN
Sbjct: 61  LDPELVRHQAQVLIDRFDIAAVKLGIAGSRENAEVIADLIRQLRERNPQLPVVLDPVLAN 120

Query: 121 GKGDQLSRDDAARVIEPLYELATVITPNLNEARTPERRCG 160
           GKGDQLSRDDA RVIEPLYELATVITPNLNEAR   R CG
Sbjct: 121 GKGDQLSRDDAVRVIEPLYELATVITPNLNEAR---RLCG 157


>ref|YP_004751374.1| phosphomethylpyrimidine kinase [Collimonas fungivorans Ter331]
 gb|AEK60551.1| Phosphomethylpyrimidine kinase [Collimonas fungivorans Ter331]
          Length = 271

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 103/157 (65%), Positives = 118/157 (75%), Gaps = 3/157 (1%)

Query: 4   AYRSTPPCVLVFSGSDPSGGAGMQADIPAITALGAHPLSVPTALTVQDNVSVFAVHALDP 63
           A  +TP CVLVFSGSDPSGGAG+QADI AI ALG HPLSV T LTVQDN  VF VH +  
Sbjct: 3   AAAATPACVLVFSGSDPSGGAGLQADITAIAALGGHPLSVVTVLTVQDNQRVFGVHPVAA 62

Query: 64  ELVRHQAQVLIDRFDIAAVKLGIAGSRENAEVIAGLIRQLRARDPHLPVVLDPVLANGKG 123
           +LVR QAQ L+DR DI+AVKLGI G+R NAE IA +IR+LR+R P LPVV DPVLA G G
Sbjct: 63  DLVRQQAQALVDRIDISAVKLGIVGNRANAEAIADVIRELRSRQPDLPVVFDPVLATGGG 122

Query: 124 DQLSRDDAARVIEPLYELATVITPNLNEARTPERRCG 160
           D L+ +D    + PL+ELATVITPN  EA   +R CG
Sbjct: 123 DSLASEDPVAALAPLFELATVITPNRIEA---DRLCG 156


>ref|ZP_08276013.1| Phosphomethylpyrimidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30517.1| Phosphomethylpyrimidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 268

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 114/145 (78%)

Query: 8   TPPCVLVFSGSDPSGGAGMQADIPAITALGAHPLSVPTALTVQDNVSVFAVHALDPELVR 67
           T PCVLVF+GSDPSGGAG+QADI ++ A+GAH L++ TALTVQDN  V AV+ +    ++
Sbjct: 2   TRPCVLVFAGSDPSGGAGIQADIGSVGAMGAHALALITALTVQDNDRVQAVYPVPARWLQ 61

Query: 68  HQAQVLIDRFDIAAVKLGIAGSRENAEVIAGLIRQLRARDPHLPVVLDPVLANGKGDQLS 127
            QAQVL+D+ DIAAVK+G+ G+  NA +I  +IR LRAR+P LPVVLDPVLA+G GDQLS
Sbjct: 62  QQAQVLVDKIDIAAVKIGVIGNLANAAIILDVIRTLRARNPALPVVLDPVLASGHGDQLS 121

Query: 128 RDDAARVIEPLYELATVITPNLNEA 152
            D+AA ++  L  LAT++TPNL EA
Sbjct: 122 LDNAALMLADLIPLATLLTPNLPEA 146


>ref|ZP_04579633.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes OXCC13]
 gb|EEO30606.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes OXCC13]
          Length = 270

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/152 (55%), Positives = 109/152 (71%)

Query: 2   QAAYRSTPPCVLVFSGSDPSGGAGMQADIPAITALGAHPLSVPTALTVQDNVSVFAVHAL 61
           +++   + PCVLVFSG DPSGGAG+ ADI AI A GAH LSV TALTVQDN  V+AV+++
Sbjct: 3   ESSSSQSRPCVLVFSGLDPSGGAGIGADIEAIGATGAHALSVITALTVQDNDKVYAVNSV 62

Query: 62  DPELVRHQAQVLIDRFDIAAVKLGIAGSRENAEVIAGLIRQLRARDPHLPVVLDPVLANG 121
           D +++  QA VLI +  +AAVK+GI G+R NAE IA +IR+LR + P LP+VLD VL +G
Sbjct: 63  DADIIARQADVLIQKIPVAAVKIGIVGNRANAETIADVIRRLRQKQPDLPLVLDTVLGSG 122

Query: 122 KGDQLSRDDAARVIEPLYELATVITPNLNEAR 153
            G  LS       + PL  LAT+ITPNL EA+
Sbjct: 123 HGFALSDGLPEYALSPLIGLATLITPNLPEAK 154


>ref|ZP_04577480.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes HOxBLS]
 gb|EEO28442.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes HOxBLS]
          Length = 272

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 100/143 (69%)

Query: 11  CVLVFSGSDPSGGAGMQADIPAITALGAHPLSVPTALTVQDNVSVFAVHALDPELVRHQA 70
           CVLVFSG DPSGGAG+ ADI AI A+GAH L V TALTVQDN  V+AV+ +D  ++  QA
Sbjct: 17  CVLVFSGLDPSGGAGISADIEAIGAVGAHALPVVTALTVQDNDRVYAVNPVDAAIISRQA 76

Query: 71  QVLIDRFDIAAVKLGIAGSRENAEVIAGLIRQLRARDPHLPVVLDPVLANGKGDQLSRDD 130
           QVL  +  ++AVK+GI G+R+NA  I  +I +LR + P LPVVLD VL +G G  L+   
Sbjct: 77  QVLAGKIPVSAVKVGIVGNRDNAVAIGEVISELRRKQPGLPVVLDTVLGSGHGFALADGT 136

Query: 131 AARVIEPLYELATVITPNLNEAR 153
               + PL  +AT++TPNL EA+
Sbjct: 137 PEYALSPLIGMATLVTPNLPEAK 159