BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0674.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773862.1| phosphomethylpyrimidine kinase [Herbaspirill...   204   5e-51
ref|ZP_08276013.1| Phosphomethylpyrimidine kinase [Oxalobacterac...   106   1e-21
ref|YP_004751374.1| phosphomethylpyrimidine kinase [Collimonas f...   106   1e-21
ref|ZP_04577480.1| phosphomethylpyrimidine kinase [Oxalobacter f...    99   2e-19
ref|ZP_04579633.1| phosphomethylpyrimidine kinase [Oxalobacter f...    90   1e-16

>ref|YP_003773862.1| phosphomethylpyrimidine kinase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61954.1| phosphomethylpyrimidine kinase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 288

 Score =  204 bits (518), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/120 (90%), Positives = 116/120 (96%)

Query: 1   MERGCAHVLLKGGHGPQEQDVINRWFGQLFRSEFAEEAIESARWRWTRLPDEFHGSGCTL 60
           M RGCAHVLLKGGHGPQEQDVINRW+GQLFRSEFAEEAIE+ARWRWTRLPDEFHGSGCTL
Sbjct: 169 MARGCAHVLLKGGHGPQEQDVINRWYGQLFRSEFAEEAIETARWRWTRLPDEFHGSGCTL 228

Query: 61  AAALSACLARGLPMREAIDLAQQYTQHALSTSYAIAEGQRIPNRVPAFEPVIDAAVAAGA 120
           AAALSACLARGLPMR+AI+LAQ YTQHAL+TSYAIA+GQRIP+RVPAFE V+DAA AAGA
Sbjct: 229 AAALSACLARGLPMRQAIELAQHYTQHALATSYAIADGQRIPHRVPAFEAVVDAAPAAGA 288


>ref|ZP_08276013.1| Phosphomethylpyrimidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30517.1| Phosphomethylpyrimidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 268

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 65/102 (63%), Gaps = 11/102 (10%)

Query: 3   RGCAHVLLKGGHGPQEQDVINRWFGQLFRSEFAEEAIESARWRWTRLPDEFHGSGCTLAA 62
           RGC HVLLKGGHG   Q V+NRW+              S  W W RLP  FHGSGCTLA+
Sbjct: 166 RGCGHVLLKGGHGFDAQ-VVNRWYTDG----------ASRSWSWPRLPGTFHGSGCTLAS 214

Query: 63  ALSACLARGLPMREAIDLAQQYTQHALSTSYAIAEGQRIPNR 104
           A++  LA GLPM  A+D+AQ +    L  S+AIA+GQRIPNR
Sbjct: 215 AIAGALACGLPMEVALDVAQAFCHRTLEQSFAIADGQRIPNR 256


>ref|YP_004751374.1| phosphomethylpyrimidine kinase [Collimonas fungivorans Ter331]
 gb|AEK60551.1| Phosphomethylpyrimidine kinase [Collimonas fungivorans Ter331]
          Length = 271

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/108 (57%), Positives = 71/108 (65%), Gaps = 10/108 (9%)

Query: 1   MERGCAHVLLKGGHGPQEQDVINRWFGQLFRSEFAEEAIESARWRWTRLPDEFHGSGCTL 60
           +ERGC H LLKGGHGP+  +V+NRW  +               WRW RLP EFHGSGCTL
Sbjct: 169 LERGCRHALLKGGHGPEPDEVVNRWISR----------DRQRNWRWPRLPGEFHGSGCTL 218

Query: 61  AAALSACLARGLPMREAIDLAQQYTQHALSTSYAIAEGQRIPNRVPAF 108
           AAALSA LA+G+ M  AID AQ Y Q  L+ SYAIA GQRIP+R   F
Sbjct: 219 AAALSALLAQGMDMEPAIDAAQTYCQQTLAASYAIAAGQRIPSRTLPF 266


>ref|ZP_04577480.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes HOxBLS]
 gb|EEO28442.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes HOxBLS]
          Length = 272

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 10/104 (9%)

Query: 1   MERGCAHVLLKGGHGPQEQDVINRWFGQLFRSEFAEEAIESARWRWTRLPDEFHGSGCTL 60
           M +G A+VL+KGGHG     V N+WFG          A    +W+W RLP EFHG+GCTL
Sbjct: 176 MAQGAANVLIKGGHGEDADSVFNQWFG----------ADGMKQWKWRRLPGEFHGTGCTL 225

Query: 61  AAALSACLARGLPMREAIDLAQQYTQHALSTSYAIAEGQRIPNR 104
           A+A++A LA+GL M +A++  Q + Q AL  +++IA+GQ+IP R
Sbjct: 226 ASAIAAYLAQGLLMEKALEKGQVWCQAALEKAFSIAKGQKIPGR 269


>ref|ZP_04579633.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes OXCC13]
 gb|EEO30606.1| phosphomethylpyrimidine kinase [Oxalobacter formigenes OXCC13]
          Length = 270

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 10/101 (9%)

Query: 4   GCAHVLLKGGHGPQEQDVINRWFGQLFRSEFAEEAIESARWRWTRLPDEFHGSGCTLAAA 63
           G   VL+KGGHG     V+N WF              S  W+WTR+  EFHG+GCTLA+A
Sbjct: 174 GARDVLVKGGHGNDVNSVVNCWF----------TGNRSKEWKWTRIGGEFHGTGCTLASA 223

Query: 64  LSACLARGLPMREAIDLAQQYTQHALSTSYAIAEGQRIPNR 104
           ++  LA G+ M  A++  Q+ TQ AL+ ++++A+GQ+IP R
Sbjct: 224 IAGYLACGMSMEVALEKGQELTQTALAKAFSVADGQKIPGR 264