BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0672.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003366353.1| hypothetical protein ROD_28281 [Citrobacter ...    82   2e-14
ref|ZP_01160095.1| hypothetical protein SKA34_12870 [Photobacter...    74   6e-12
ref|YP_003548065.1| hypothetical protein Caka_0872 [Coraliomarga...    59   4e-07

>ref|YP_003366353.1| hypothetical protein ROD_28281 [Citrobacter rodentium ICC168]
 emb|CBG89569.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 166

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 1   MNEDESFEIIPYIGAGKICFGMTPQEIEKIYGPADSVTFNHLKQRVEFRSFTNIGYSPGS 60
           MN +  FE+ P +G   + FGM+P+++    G  + V  N   + VE R+  NI Y+   
Sbjct: 1   MNTNTIFELYPQVGINNVKFGMSPEQVAMELGDPEEVWVNENNELVEERAHLNITYTALD 60

Query: 61  AETVSHIGFGRQMENVRFKDSNIFLDEESVVLAELVAEDGNPFTYLGFIVLFELGITLTG 120
            E + H GFG++M +V F   N+F  +   ++ +++  D  P+ ++G I   +LGI+L+G
Sbjct: 61  KE-LCHFGFGKKMNHVMFSGVNVFHSKPDKIIKKMMTIDDKPYFFVGSIFFMKLGISLSG 119

Query: 121 FH------DQNVSQKALTMFPRGAWDKWLPKLKPF 149
           F+      D++   KA+ ++    +D  LP+++ F
Sbjct: 120 FYDEDEDEDEDEDDKAIALYNHHDYDDLLPQMELF 154


>ref|ZP_01160095.1| hypothetical protein SKA34_12870 [Photobacterium sp. SKA34]
 gb|EAR56086.1| hypothetical protein SKA34_12870 [Photobacterium sp. SKA34]
          Length = 143

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 8   EIIPYIGAGKICFGMTPQEIEKIYGPADSVTFNHLKQRVEFRSFTNIGYSPGSAETVSHI 67
           +I  Y   G + FGM+  E+    G   S+  N+  +   +     + Y   S     H+
Sbjct: 2   KIEAYKSFGPVKFGMSETEVVNQLGKPVSIRTNNENELEYYYDELIVRYDANS----KHV 57

Query: 68  GFGRQMENV--RFKDSNIFLDEESVVLAELVAEDGNPFTYLGFIVLFELGITLTGFHDQN 125
             G  +  +  RF+ +++ L+ +  + A L   DG+P+ + G+IVLF+LGITLTGF+D +
Sbjct: 58  REGTLLPQILGRFQVNDLTLNWKDDLFATLCQRDGDPYKFYGYIVLFKLGITLTGFYDGD 117

Query: 126 VSQKALTMFPRGAWDKWLPKLKPF 149
            SQKA++ F  G WD+    +K F
Sbjct: 118 DSQKAISAFRSGDWDQLKGDMKAF 141


>ref|YP_003548065.1| hypothetical protein Caka_0872 [Coraliomargarita akajimensis DSM
           45221]
 gb|ADE53895.1| hypothetical protein Caka_0872 [Coraliomargarita akajimensis DSM
           45221]
          Length = 124

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 25/129 (19%)

Query: 22  MTPQEIEKIYGPADSVTFNHLKQRVEFRS----------FTNIGYSPGSAETVSHIGFGR 71
           MT +++   +G + S + N   +  E R                ++P SAE V       
Sbjct: 1   MTREQVASEFGDSISESTNSRNEIEESRDGLVIRYDETGIVEFAFTPDSAEPV------- 53

Query: 72  QMENVRFKDSNIFLDEESVVLAELVAEDGNPFTYLGFIVLFELGITLTGFHDQNVSQKAL 131
                 F+  ++F  E+ +  +EL+  D NP    GFI+   +GIT+TG+HD   SQ+A+
Sbjct: 54  ------FRGISLFHQEDPI--SELLQFDPNPVECFGFILFLRVGITVTGYHDNTPSQRAI 105

Query: 132 TMFPRGAWD 140
           T F RG WD
Sbjct: 106 TCFRRGRWD 114