BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0671.p         (42 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003366352.1| hypothetical protein ROD_28271 [Citrobacter ...    58   4e-07

>ref|YP_003366352.1| hypothetical protein ROD_28271 [Citrobacter rodentium ICC168]
 emb|CBG89568.1| hypothetical protein ROD_28271 [Citrobacter rodentium ICC168]
          Length = 309

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 36/42 (85%)

Query: 1   MAIEIRDVRKVAKGAGEAKRYNEAMLEMLEYFKCLEKNSLLR 42
           MA+EI+DVR+VAK  G+ +RYN A+ EML+Y+ CLEK++LLR
Sbjct: 268 MALEIKDVRRVAKLQGDLRRYNIALQEMLKYYHCLEKHNLLR 309