BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0667.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773866.1| chorismate mutase [Herbaspirillum seropedica...   275   2e-72
ref|YP_003897144.1| chorismate mutase [Halomonas elongata DSM 25...   115   2e-24
ref|YP_004753031.1| periplasmic chorismate mutase I [Collimonas ...   107   1e-21
ref|YP_001856914.1| chorismate mutase [Burkholderia phymatum STM...    95   5e-18
ref|YP_001807586.1| chorismate mutase [Burkholderia ambifaria MC...    94   1e-17

>ref|YP_003773866.1| chorismate mutase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61958.1| chorismate mutase protein [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  275 bits (703), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 172/189 (91%), Positives = 176/189 (93%)

Query: 1   MRRLSSRSFAALPLIAALLLAACATTPPPAARSDVEQLLTLQKTRLDVAAPVARSKWNSH 60
           MRRL S    AL LIA LLL+ACAT+ PPA RSDVEQLL+LQKTRLDVAAPVARSKWNSH
Sbjct: 1   MRRLPSSCLPALALIATLLLSACATSTPPAVRSDVEQLLSLQKTRLDVAAPVARSKWNSH 60

Query: 61  APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF 120
           APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF
Sbjct: 61  APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF 120

Query: 121 ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAELAPEILGADYAPAVRER 180
           ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAEL  EILGADY PAVRER
Sbjct: 121 ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRER 180

Query: 181 ATDALHCQR 189
           AT+AL CQR
Sbjct: 181 ATEALRCQR 189


>ref|YP_003897144.1| chorismate mutase [Halomonas elongata DSM 2581]
 emb|CBV41959.1| chorismate mutase [Halomonas elongata DSM 2581]
          Length = 197

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/148 (46%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 31  ARSDVEQLLTLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWT 90
           AR  V+ L+   + RL +A  VA +KWNS API+ P REA IL  V   AQ  G+D    
Sbjct: 40  ARETVDGLIAQVEQRLSIAPDVAMAKWNSEAPINVPEREAQILKRVVEEAQHQGVDHQLA 99

Query: 91  RRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARLNG 150
           R FFQDQF+A K VQ+ LH+QW+ E +PPF NPP+LA  +RP LD LTP L+ +L+    
Sbjct: 100 RAFFQDQFDASKAVQKQLHQQWQKESQPPFDNPPNLANDIRPQLDTLTPQLIQSLSEFQT 159

Query: 151 HWCEPAVQRDLAELAPE-ILGADYAPAV 177
              E A Q+ L E A   +   +YA A+
Sbjct: 160 FESESAAQQYLEESAARAVANNEYAEAL 187


>ref|YP_004753031.1| periplasmic chorismate mutase I [Collimonas fungivorans Ter331]
 gb|AEK62208.1| Periplasmic chorismate mutase I precursor [Collimonas fungivorans
           Ter331]
          Length = 191

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 2/128 (1%)

Query: 35  VEQLLTLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFF 94
           V++LLTL   RL VA  VA++KWNS   ++DP RE +ILD V A+A+  GLD  + RRFF
Sbjct: 40  VDRLLTLIDQRLAVAPLVAKAKWNSGGAVNDPPREQLILDAVVAQAK--GLDPVFARRFF 97

Query: 95  QDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARLNGHWCE 154
           Q QF+A K +Q  LH QWR + +  F + PDL   VRPVLDRLTP+L+A L ++     +
Sbjct: 98  QAQFDASKAMQLGLHAQWRRQGQGRFDDAPDLGRDVRPVLDRLTPELIAELEKIQPILAQ 157

Query: 155 PAVQRDLA 162
           P +   +A
Sbjct: 158 PGMAAYIA 165


>ref|YP_001856914.1| chorismate mutase [Burkholderia phymatum STM815]
 gb|ACC69868.1| chorismate mutase [Burkholderia phymatum STM815]
          Length = 207

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/139 (44%), Positives = 78/139 (56%), Gaps = 6/139 (4%)

Query: 15  IAALLLAACATTPPPAARSD-----VEQLLTLQKTRLDVAAPVARSKWNSHAPIDDPARE 69
           + A+LL +     P  AR+D     +  L+ L   RL +A PVAR KW  H PI D  RE
Sbjct: 19  LGAILLCSTLAFAPAPARADGDDTSLTNLVALVSQRLALAEPVARYKWAHHQPITDTPRE 78

Query: 70  AVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQ 129
             +L DV  RA + G+D A+   FFQDQ +A K VQ  L   WR   RPP    PDLA  
Sbjct: 79  QALLTDVEKRASRAGVDPAFAHAFFQDQIDASKDVQNALFDTWRT-TRPPEGAAPDLATS 137

Query: 130 VRPVLDRLTPDLLAALARL 148
           +RP LD+LT  L+ ALAR+
Sbjct: 138 LRPQLDKLTQSLIPALARV 156


>ref|YP_001807586.1| chorismate mutase [Burkholderia ambifaria MC40-6]
 gb|ACB63370.1| chorismate mutase [Burkholderia ambifaria MC40-6]
          Length = 197

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 6/153 (3%)

Query: 15  IAALLLAACATTPPPAARSD-----VEQLLTLQKTRLDVAAPVARSKWNSHAPIDDPARE 69
           +A   L     + PP AR+D     +  L+ L   R+ +A PVAR KW +H  I+D  RE
Sbjct: 9   VAVAALGVALFSSPPVARADGDDTALTNLVALASQRIALAEPVARWKWANHKAIEDQPRE 68

Query: 70  AVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQ 129
           A +L  V  RA + G+D A+ R FF+DQ  A K VQ  L   WR   RPP   PPDLA  
Sbjct: 69  AALLASVEKRAAQSGVDPAFARTFFEDQIAASKDVQNALFATWRA-TRPPEGTPPDLATS 127

Query: 130 VRPVLDRLTPDLLAALARLNGHWCEPAVQRDLA 162
            RP LDRLT  +LA LAR+      P  Q  LA
Sbjct: 128 TRPALDRLTQKMLAGLARIAPLRDAPDCQARLA 160