BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0663.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773872.1| transcription regulator [Herbaspirillum sero... 571 e-161 ref|YP_004751758.1| transcriptional regulator [Collimonas fungiv... 403 e-110 ref|YP_001856734.1| DeoR family transcriptional regulator [Burkh... 345 1e-92 ref|ZP_03268002.1| transcriptional regulator, DeoR family [Burkh... 342 8e-92 ref|YP_003606061.1| transcriptional regulator, DeoR family [Burk... 341 1e-91 >ref|YP_003773872.1| transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ61964.1| transcription regulator (repressor) protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 304/320 (95%), Positives = 310/320 (96%) Query: 40 MSSSASKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 99 MSSS SKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV Sbjct: 1 MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 60 Query: 100 SSCLELAQGLQERYGLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLV 159 SSCLELAQGLQERYGL+VCRVVPGAGGA NPNESQEVQQMLAVAGAE+MEQYL SEAPLV Sbjct: 61 SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV 120 Query: 160 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 219 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP Sbjct: 121 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 180 Query: 220 APRVAESERDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADL 279 APRVAESE DRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDD EVA+L Sbjct: 181 APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL 240 Query: 280 QRQGAIGEMICHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALR 339 QRQGA+GEMICHAFDIDGVMLPSSL+ARVTTPPL Q PQRPVIA GGSKKA+AVRAALR Sbjct: 241 QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR 300 Query: 340 GGWLTGLVTDETCARHALQD 359 GGWLTGLVTDE CARHALQD Sbjct: 301 GGWLTGLVTDEVCARHALQD 320 >ref|YP_004751758.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60935.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 319 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 208/314 (66%), Positives = 249/314 (79%) Query: 46 KLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLEL 105 KLDLAARAAWMYYVAGNTQNEIA+ LGISRQMAQR+VAYA ++ LVKV++ HPVS+CLEL Sbjct: 5 KLDLAARAAWMYYVAGNTQNEIADHLGISRQMAQRLVAYARESGLVKVRVEHPVSTCLEL 64 Query: 106 AQGLQERYGLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLVVNVGSG 165 A LQ RYGLE C VVP G + + VQQMLAV GAEVME+YL E PLVVNVGSG Sbjct: 65 AAALQLRYGLEQCHVVPSMGAGDKVVDDAGVQQMLAVVGAEVMERYLQQETPLVVNVGSG 124 Query: 166 RTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLPAPRVAE 225 RTLKA +E ++E+ERPQH+IVSM+GA A+DGS+NRYDVAL AA+K+ ARF+ LPAP VA+ Sbjct: 125 RTLKAVLEAVTEMERPQHRIVSMVGAIAADGSSNRYDVALTAADKIQARFFFLPAPLVAD 184 Query: 226 SERDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADLQRQGAI 285 + D +QWC+HR Y+IV LA+ ADVTF+G+GTIA MHEDGFI EEVA LQ GA+ Sbjct: 185 NAEDMRQWCSHRVYRIVADLAQHADVTFVGVGTIAPGCPMHEDGFITAEEVAQLQGYGAV 244 Query: 286 GEMICHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALRGGWLTG 345 GEMI HA DG ++ S L RVT+ PL P RPVI ++GG KKA+A+RA LRGGW +G Sbjct: 245 GEMIGHAIAGDGRLIASPLEDRVTSLPLTSPPTRPVIGMAGGVKKAEAIRAVLRGGWWSG 304 Query: 346 LVTDETCARHALQD 359 L+TDE CAR+AL+D Sbjct: 305 LITDEYCARYALRD 318 >ref|YP_001856734.1| DeoR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC69688.1| transcriptional regulator, DeoR family [Burkholderia phymatum STM815] Length = 322 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 175/318 (55%), Positives = 232/318 (72%), Gaps = 5/318 (1%) Query: 40 MSSSASKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 99 M S KLDLA RAAW+YYVAGNTQNEIAE+L +SR +AQR+VA+A + NL++V++ H + Sbjct: 1 MPKSTEKLDLATRAAWLYYVAGNTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRL 60 Query: 100 SSCLELAQGLQERYGLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLV 159 + CL LA L +RYGL +C VVP + ++ +E+ + LAVAGA+VME+YL+ E P+V Sbjct: 61 ADCLSLADQLSKRYGLSMCEVVP-----VDNDKPEEIDRKLAVAGAQVMERYLNEERPMV 115 Query: 160 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 219 V V SGRTLKA ++++ +LERPQH++VSM+GA A DGS+NRYDVAL +EK G + +LLP Sbjct: 116 VAVSSGRTLKAVVDQVGQLERPQHRLVSMVGAIAQDGSSNRYDVALHISEKTGGKHFLLP 175 Query: 220 APRVAESERDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADL 279 AP +A+SE +R QWCNHR Y+IV L+ ADV F+GIG I L +HEDGFI +EV +L Sbjct: 176 APLIADSEAERAQWCNHRLYRIVESLSGEADVAFVGIGNIGLHCPLHEDGFITSDEVEEL 235 Query: 280 QRQGAIGEMICHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALR 339 GA+ E++ D DG + S RVT+ L P+RPVI +GG +K +AV AAL+ Sbjct: 236 VSLGAVAELLGLPIDADGARVESPTGRRVTSLRLDSPPKRPVIGFAGGERKRNAVIAALK 295 Query: 340 GGWLTGLVTDETCARHAL 357 GGWL+GLVTDE CAR AL Sbjct: 296 GGWLSGLVTDELCARAAL 313 >ref|ZP_03268002.1| transcriptional regulator, DeoR family [Burkholderia sp. H160] gb|EEA00406.1| transcriptional regulator, DeoR family [Burkholderia sp. H160] Length = 315 Score = 342 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 173/319 (54%), Positives = 234/319 (73%), Gaps = 5/319 (1%) Query: 40 MSSSASKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 99 M S KLDLA RAAW+YYVAGNTQNEIAE+L +SR +AQR+VA+A + NL++V++ H + Sbjct: 1 MPRSTEKLDLATRAAWLYYVAGNTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHKL 60 Query: 100 SSCLELAQGLQERYGLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLV 159 + CL LA L +RYGL +C +VP G + S+E+ + LAVAGA+VME+YLS E P+V Sbjct: 61 ADCLSLADQLSKRYGLSLCEIVPIDG-----DTSEELNRKLAVAGAQVMERYLSEEKPMV 115 Query: 160 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 219 V V SGRTLKAA++++++L+RPQH++VSM+GA A DGS+NRYDVAL +EK G + +LLP Sbjct: 116 VAVSSGRTLKAAVDQIAQLDRPQHRLVSMVGAIAQDGSSNRYDVALHISEKTGGKHFLLP 175 Query: 220 APRVAESERDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADL 279 AP +A+SE +R QWCNHR Y+IV L+ +ADV F+GIG I + +HEDGFI + EV +L Sbjct: 176 APLLADSEAERVQWCNHRLYRIVESLSAQADVAFVGIGNIGMTCPLHEDGFITEGEVKEL 235 Query: 280 QRQGAIGEMICHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALR 339 + GA+ EM+ D G + S RVT+ L P+RP I +GG +K +A+ A L+ Sbjct: 236 MQNGAVAEMLGLPIDAAGAHVESPTGRRVTSIALDMPPRRPTIGFAGGQRKREALIAVLK 295 Query: 340 GGWLTGLVTDETCARHALQ 358 GGWL+GLVTDE CAR AL+ Sbjct: 296 GGWLSGLVTDELCARAALE 314 >ref|YP_003606061.1| transcriptional regulator, DeoR family [Burkholderia sp. CCGE1002] gb|ADG16550.1| transcriptional regulator, DeoR family [Burkholderia sp. CCGE1002] Length = 315 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 173/319 (54%), Positives = 235/319 (73%), Gaps = 5/319 (1%) Query: 40 MSSSASKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 99 M S KLDLA RAAW+YYVAGNTQNEIAE+L +SR +AQR+VA+A + NL++V++ H + Sbjct: 1 MPRSTEKLDLATRAAWLYYVAGNTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHKL 60 Query: 100 SSCLELAQGLQERYGLEVCRVVPGAGGAENPNESQEVQQMLAVAGAEVMEQYLSSEAPLV 159 + CL LA L +RYGL +C VVP G + S+E+ + LAVAGA+VME+YL++E P+V Sbjct: 61 ADCLSLADQLSKRYGLSMCEVVPIDG-----DTSEELDRKLAVAGAQVMERYLTAEKPMV 115 Query: 160 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 219 V V SGRTLKAA++++++L+RPQH++VSM+GA A DGS+NRYDVAL +EK G +++LLP Sbjct: 116 VAVSSGRTLKAAVDQIAQLDRPQHRLVSMVGAIAQDGSSNRYDVALHISEKTGGKYFLLP 175 Query: 220 APRVAESERDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDEEVADL 279 AP +A+SE +R QWCNHR Y+IV L+ +ADV F+GIG I + +HEDGFI + EV +L Sbjct: 176 APLLADSEAERAQWCNHRLYRIVESLSAQADVAFVGIGNIGMTCPLHEDGFITEGEVKEL 235 Query: 280 QRQGAIGEMICHAFDIDGVMLPSSLAARVTTPPLAQAPQRPVIALSGGSKKADAVRAALR 339 GA+ EM+ D G + S RVT+ L P+RP I +GG +K +A+ A L+ Sbjct: 236 MHNGAVAEMLGLPIDAAGASVESPTGRRVTSIALDAPPRRPTIGFAGGQRKREALIAVLK 295 Query: 340 GGWLTGLVTDETCARHALQ 358 GGWL+GLVTDE CAR AL+ Sbjct: 296 GGWLSGLVTDELCARAALE 314