BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0661.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773873.1| sugar ABC transporter periplasmic protein [H... 779 0.0 ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand bi... 644 0.0 ref|YP_004229369.1| sugar ABC transporter substrate-binding prot... 577 e-162 ref|YP_003908075.1| extracellular solute-binding protein family ... 571 e-160 ref|ZP_02884633.1| extracellular solute-binding protein family 1... 569 e-160 >ref|YP_003773873.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61965.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 451 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 413/431 (95%), Positives = 419/431 (97%) Query: 18 AAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWVTMEESVLR 77 AAAI+ L AGLA AEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWVTMEESVLR Sbjct: 21 AAAISTLFAAGLAQAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWVTMEESVLR 80 Query: 78 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMSGLPADYDEADLIKPVREGLSVDG 137 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPM+GLPADYDEADLIKPVREGLSVDG Sbjct: 81 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKPVREGLSVDG 140 Query: 138 KLYALPFYAESSMTYYRKDLFEQKKLTMPQHPTWDEVAKLAAQLHDPAKGVYGICLRGRA 197 KLYALPFYAESSMTYYRKDLFEQKKLTMPQ PTWDE+AKLAAQLHDPAKGVYGICLRGRA Sbjct: 141 KLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTWDEIAKLAAQLHDPAKGVYGICLRGRA 200 Query: 198 GWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVNFYVDLMRKYGPPGASSNGFNE 257 GWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSV FYVDLMRKYGPPGASSNGFNE Sbjct: 201 GWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVAFYVDLMRKYGPPGASSNGFNE 260 Query: 258 NLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPQQVTDKGSHWLWIWSLAVP 317 NLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSP QVTDKGSHWLWIWSLAVP Sbjct: 261 NLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPMQVTDKGSHWLWIWSLAVP 320 Query: 318 KSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVSPFSDFVLD 377 KSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVSPFSDFVLD Sbjct: 321 KSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVSPFSDFVLD 380 Query: 378 AIQTADANKPTLKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKGPADAALKTAQAQT 437 AIQTADANKPT+KPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGK +DAAL AQAQ Sbjct: 381 AIQTADANKPTVKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKTTSDAALDAAQAQA 440 Query: 438 VRMMKQGRYIK 448 VRMM+QGRYIK Sbjct: 441 VRMMRQGRYIK 451 >ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK60934.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 472 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 331/450 (73%), Positives = 374/450 (83%), Gaps = 2/450 (0%) Query: 1 METSMKLRAPALPSARLAAAIAILGT--AGLAFAEPVTLNIASINNPDMIELQKLAPAFE 58 MET+MK R+ S A A L G A+A PVT+NIA+INNPDMIELQKL+ FE Sbjct: 23 METNMKRRSIRASSFSAALAPLSLLAIFCGSAWAAPVTVNIATINNPDMIELQKLSTNFE 82 Query: 59 KANPDIKLRWVTMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMSGLPA 118 ANPDIKLRWV +EE+VLRQR+TTDIAT SGQFDLMTIGAYEAPIWAKKGWLAPM GLPA Sbjct: 83 TANPDIKLRWVVLEENVLRQRVTTDIATGSGQFDLMTIGAYEAPIWAKKGWLAPMEGLPA 142 Query: 119 DYDEADLIKPVREGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQHPTWDEVAKLA 178 +YDEADLIK VREGL+ GKLYALPFYAESSMTYYRKDLF +K L MP+HPT+ ++A A Sbjct: 143 NYDEADLIKTVREGLTEGGKLYALPFYAESSMTYYRKDLFAEKGLKMPEHPTFQDIAGFA 202 Query: 179 AQLHDPAKGVYGICLRGRAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVNFY 238 +L D G+ GICLRGRAGWGENMA++ TM N +G RWFDE+WQPQL+SPEWK +V Y Sbjct: 203 EKLTDKQNGIAGICLRGRAGWGENMALVGTMVNTFGARWFDEKWQPQLNSPEWKNAVTTY 262 Query: 239 VDLMRKYGPPGASSNGFNENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSP 298 VDL+ KYGP GA+SNGFNENLVLFSSGKCGM +DATVAAGM+Y K+SKV K AFAPSP Sbjct: 263 VDLLHKYGPQGATSNGFNENLVLFSSGKCGMGIDATVAAGMIYSSKESKVVGKVAFAPSP 322 Query: 299 QQVTDKGSHWLWIWSLAVPKSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNS 358 VT KGSHWLWIWSLA+PKSSKSQDAAKKFAAWATSKEY+ LVAK+ GW LVPPGTR S Sbjct: 323 VAVTPKGSHWLWIWSLAIPKSSKSQDAAKKFAAWATSKEYVQLVAKEKGWGLVPPGTRMS 382 Query: 359 TYASAEYKKVSPFSDFVLDAIQTADANKPTLKPVPYTGVQFATIPEFQSIGTVTGQAIAG 418 TYAS EYKK +P+SDFVL+AIQ+AD TL+ VPYTG+QF TIPEFQS+GTV GQAIAG Sbjct: 383 TYASPEYKKAAPYSDFVLNAIQSADTKDATLQKVPYTGIQFVTIPEFQSLGTVVGQAIAG 442 Query: 419 ALAGKGPADAALKTAQAQTVRMMKQGRYIK 448 ALAGK DAAL+T+QAQ R+M+QGRYIK Sbjct: 443 ALAGKSTVDAALQTSQAQADRVMRQGRYIK 472 >ref|YP_004229369.1| sugar ABC transporter substrate-binding protein [Burkholderia sp. CCGE1001] gb|ADX56309.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1001] Length = 440 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 293/439 (66%), Positives = 342/439 (77%), Gaps = 1/439 (0%) Query: 10 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWV 69 PAL SA + L+ A T+ IA++NNPDMIEL+KL+P FEKANPDIKL WV Sbjct: 3 PALKSALRVVSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 70 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMSGLPADYDEADLIKPV 129 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P++ LPADYD D++K Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 130 REGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQHPTWDEVAKLAAQLHDPAKGVY 189 R+GLS G+LYALPFY ESSMTYYRKDLF K L MP PT+D++A+ A +L D A GVY Sbjct: 122 RDGLSAGGQLYALPFYVESSMTYYRKDLFAAKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 190 GICLRGRAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVNFYVDLMRKYGPPG 249 GICLRG+AGWGENMA TT+ N +GGRWFDE+W QL+SPEWKK++ FYVDL++K GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKDGPPG 241 Query: 250 ASSNGFNENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPQQVTDKGSHWL 309 ASSNGFNENL L SSGKC MW+DATVAAGMLY+ + S++ADK FA +P QVT KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVQVTPKGSHWL 301 Query: 310 WIWSLAVPKSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVS 369 W W+LA+PKSSK DAAKKF WATSK+YI LVAKD GWA VPPGTR STYA AEYK+ + Sbjct: 302 WAWALAIPKSSKQTDAAKKFITWATSKQYIELVAKDEGWASVPPGTRQSTYARAEYKQAA 361 Query: 370 PFSDFVLDAIQTADANKPTLKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKGPADAA 429 PFSDFVL AI+TAD + PTLKPVPYTGVQF IPEFQS GTV GQ+I+GA+AG+ D A Sbjct: 362 PFSDFVLKAIETADPDHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMSVDQA 421 Query: 430 LKTAQAQTVRMMKQGRYIK 448 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440 >ref|YP_003908075.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] gb|ADN58784.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] Length = 440 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 290/439 (66%), Positives = 340/439 (77%), Gaps = 1/439 (0%) Query: 10 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWV 69 PAL SA + L+ A T+ IA++NNPDMIEL+KL+P FEKANPDIKL WV Sbjct: 3 PALKSALKMVSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 70 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMSGLPADYDEADLIKPV 129 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P++ LPADYD D++K Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 130 REGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQHPTWDEVAKLAAQLHDPAKGVY 189 R+GLS G+LYALPFY ESSMTYYRKDLF K L MP PT+D++A+ A +L D A GVY Sbjct: 122 RDGLSAGGQLYALPFYVESSMTYYRKDLFAVKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 190 GICLRGRAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVNFYVDLMRKYGPPG 249 GICLRG+AGWGENMA TT+ N +GGRWFDE+W QL+SPEWKK++ FYVDL++K GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKNGPPG 241 Query: 250 ASSNGFNENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPQQVTDKGSHWL 309 ASSNGFNENL L SSGKC MW+DATVAAGMLY+ + S++ADK FA +P VT KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVAVTPKGSHWL 301 Query: 310 WIWSLAVPKSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVS 369 W W+LA+PKSSK DAAKKF WATSK+YI LVAKD GWA VPPGTR STYA AEYK+ + Sbjct: 302 WAWALAIPKSSKQADAAKKFITWATSKQYIELVAKDEGWASVPPGTRQSTYARAEYKQAA 361 Query: 370 PFSDFVLDAIQTADANKPTLKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKGPADAA 429 PF DFVL AI++AD + PTLKPVPYTGVQF IPEFQS GTV GQ+I+GA+AG+ D A Sbjct: 362 PFGDFVLKAIESADPDHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMTVDQA 421 Query: 430 LKTAQAQTVRMMKQGRYIK 448 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440 >ref|ZP_02884633.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] gb|EDT09798.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] Length = 440 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 291/439 (66%), Positives = 339/439 (77%), Gaps = 1/439 (0%) Query: 10 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWV 69 PAL SA + L+ A T+ IA++NNPDMIEL+KL+P FEKANPDIKL WV Sbjct: 3 PALKSALKTMSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 70 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMSGLPADYDEADLIKPV 129 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P++ LPADYD D++K Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 130 REGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQHPTWDEVAKLAAQLHDPAKGVY 189 R+GLS G+LYALPFY ESSMTYYRKDLF K L MP PT+D++A+ A +L D A GVY Sbjct: 122 RDGLSSGGQLYALPFYVESSMTYYRKDLFAAKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 190 GICLRGRAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVNFYVDLMRKYGPPG 249 GICLRG+AGWGENMA TT+ N +GGRWFDE+W QL+SPEWKK++ FYVDL++K GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKNGPPG 241 Query: 250 ASSNGFNENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPQQVTDKGSHWL 309 ASSNGFNENL L SSGKC MW+DATVAAGMLY+ + S++ADK FA +P VT KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVAVTPKGSHWL 301 Query: 310 WIWSLAVPKSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVS 369 W W+LA+PKSSK DAAKKF AWATSK+YI LVAKD GWA VPPGTR STYA EYK+ + Sbjct: 302 WAWALAIPKSSKQADAAKKFIAWATSKQYIELVAKDEGWASVPPGTRQSTYARPEYKQAA 361 Query: 370 PFSDFVLDAIQTADANKPTLKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKGPADAA 429 PF DFVL AI+TAD PTLKPVPYTGVQF IPEFQS GTV GQ+I+GA+AG+ D A Sbjct: 362 PFGDFVLKAIETADPEHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMTVDQA 421 Query: 430 LKTAQAQTVRMMKQGRYIK 448 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440