BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0660.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirill... 522 e-146 ref|YP_004751756.1| hypothetical protein CFU_1101 [Collimonas fu... 458 e-127 ref|ZP_02354676.1| maltose/mannitol ABC transporter, permease pr... 398 e-109 ref|ZP_02462521.1| putative sorbitol/mannitol ABC transporter, p... 398 e-109 ref|YP_441252.1| mannitol ABC transporter permease [Burkholderia... 396 e-108 >ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61966.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 288/326 (88%), Positives = 299/326 (91%), Gaps = 8/326 (2%) Query: 2 SSISNTSPMSSEASASTPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVP 61 + +S+TSPM S Q++ ++ +RF PIRL+QTP+V +L WMIVP Sbjct: 7 TQVSSTSPMMQSTSQPASRRQQTSPPRK--------ERFNPIRLMQTPSVLILLAWMIVP 58 Query: 62 LAMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWPSIGNTALLIGSVLAISVIGGT 121 LAMTIYFSVNRYNLMAPDQTGFVGLENY FLLQDPAFWPSIGNTALLIGSVLAISVIGGT Sbjct: 59 LAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISVIGGT 118 Query: 122 LLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPID 181 LLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPID Sbjct: 119 LLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPID 178 Query: 182 WLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHL 241 WLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHL Sbjct: 179 WLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHL 238 Query: 242 KRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIF 301 KRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIF Sbjct: 239 KRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIF 298 Query: 302 AVVLANIVSFFLVRMLARNLKGVNEK 327 AVVLANIVSFFLVRMLARNLKGVNEK Sbjct: 299 AVVLANIVSFFLVRMLARNLKGVNEK 324 >ref|YP_004751756.1| hypothetical protein CFU_1101 [Collimonas fungivorans Ter331] gb|AEK60933.1| hypothetical protein CFU_1101 [Collimonas fungivorans Ter331] Length = 309 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 255/311 (81%), Positives = 277/311 (89%), Gaps = 3/311 (0%) Query: 17 STPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTIYFSVNRYNLM 76 STPS Q + A +F P+RLLQTP+V LL LWMIVPLAMT+YFSV RYNLM Sbjct: 2 STPSAQVA---NAAAPVRPNASKFKPVRLLQTPSVFLLLLWMIVPLAMTLYFSVIRYNLM 58 Query: 77 APDQTGFVGLENYIFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGI 136 P+ TGFVGL+NY FL DPAFWPSI NT LLIGSVL ISV+ GTLLAVLFDQPF GRGI Sbjct: 59 MPEATGFVGLDNYAFLFNDPAFWPSILNTLLLIGSVLVISVVSGTLLAVLFDQPFFGRGI 118 Query: 137 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVA 196 ARLLVIGPFFVMPTVAALIWKNMI+HPVYG+LA+VMR +GLEPIDWLAEYPMLSVI+IVA Sbjct: 119 ARLLVIGPFFVMPTVAALIWKNMILHPVYGLLAWVMRLIGLEPIDWLAEYPMLSVIMIVA 178 Query: 197 WQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFL 256 WQWIPFAFLILLTALQSLD +QKEAAQLDGAGP+R+F+Y+VLPHLKRAITVVIMIETIFL Sbjct: 179 WQWIPFAFLILLTALQSLDLEQKEAAQLDGAGPIRVFWYVVLPHLKRAITVVIMIETIFL 238 Query: 257 LSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRM 316 LS+FAEIFTTTAGGPGTATTNL +LVYSIGLQQFDIGIASAGGI AVVLANIVSFFLVRM Sbjct: 239 LSIFAEIFTTTAGGPGTATTNLAYLVYSIGLQQFDIGIASAGGIIAVVLANIVSFFLVRM 298 Query: 317 LARNLKGVNEK 327 +A+NLKG NEK Sbjct: 299 MAKNLKGANEK 309 >ref|ZP_02354676.1| maltose/mannitol ABC transporter, permease protein, putative [Burkholderia oklahomensis EO147] ref|ZP_02361865.1| maltose/mannitol ABC transporter, permease protein, putative [Burkholderia oklahomensis C6786] Length = 314 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 208/300 (69%), Positives = 253/300 (84%), Gaps = 8/300 (2%) Query: 27 GKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTIYFSVNRYNLMAPDQTGFVGL 86 G+RA GK P R L TP+VA+LFLWM +PLAMTI+FS++RYNL+ PD GF GL Sbjct: 22 GERARGK--------PARWLATPSVAVLFLWMAIPLAMTIWFSLSRYNLLNPDVKGFAGL 73 Query: 87 ENYIFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFF 146 +NY FL DP+F P+I +T LIGSVLAI+VIGG L+AVLFD+ F G+GIARL I PFF Sbjct: 74 DNYRFLATDPSFLPAIWHTLALIGSVLAITVIGGVLMAVLFDRKFYGQGIARLFAIAPFF 133 Query: 147 VMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLI 206 VMPTV+ALIWKNMI+HPVYG++A M LG++PIDW A+YP+ S+++IVAWQW+PFAFLI Sbjct: 134 VMPTVSALIWKNMILHPVYGLVARAMLALGMQPIDWFAQYPLASIVMIVAWQWLPFAFLI 193 Query: 207 LLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTT 266 L TA+QSLD +QKEAA++DGAGP +FFYI LPHLKRAI VV+M+ETIFLLS+FAEI+TT Sbjct: 194 LFTAIQSLDQEQKEAARIDGAGPFAMFFYITLPHLKRAIAVVVMMETIFLLSIFAEIYTT 253 Query: 267 TAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLKGVNE 326 T GGPG ATTNL++L+Y++GLQQFD+G+ASAGGI AVVLAN+VSFFLVRMLARNLKG E Sbjct: 254 TGGGPGDATTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYE 313 >ref|ZP_02462521.1| putative sorbitol/mannitol ABC transporter, permease protein [Burkholderia thailandensis MSMB43] Length = 318 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 202/285 (70%), Positives = 247/285 (86%) Query: 42 PIRLLQTPAVALLFLWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWPS 101 P R L P+VA+LFLWM +PLAMTI+FS+ RYNL+ PD GF GL+NY FL DP+F P+ Sbjct: 33 PARWLAAPSVAVLFLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLDNYRFLATDPSFLPA 92 Query: 102 IGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIM 161 I +T LIGSVLAI+V GG L+AVLFD+ F G+G+ARL+ I PFFVMPTV+ALIWKNMI+ Sbjct: 93 IWHTLALIGSVLAITVAGGVLMAVLFDRKFYGQGVARLIAIAPFFVMPTVSALIWKNMIL 152 Query: 162 HPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEA 221 HPVYG++A MR LG++PIDW A+YP+ S+++IVAWQW+PFAFLIL TA+QSLD +QKEA Sbjct: 153 HPVYGLVARAMRALGMQPIDWFAQYPLTSIVMIVAWQWLPFAFLILFTAIQSLDQEQKEA 212 Query: 222 AQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFL 281 A++DGAGPV +FFYI LPHLKRAI VV+M+ETIFLLS+FAEI+TTT GGPG ATTNL++L Sbjct: 213 ARIDGAGPVAMFFYITLPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGDATTNLSYL 272 Query: 282 VYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLKGVNE 326 +Y++GLQQFD+G+ASAGGI AVVLAN+VSFFLVRMLARNLKG E Sbjct: 273 IYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYE 317 >ref|YP_441252.1| mannitol ABC transporter permease [Burkholderia thailandensis E264] gb|ABC36514.1| mannitol ABC transporter, permease protein [Burkholderia thailandensis E264] Length = 369 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 200/285 (70%), Positives = 246/285 (86%) Query: 42 PIRLLQTPAVALLFLWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYIFLLQDPAFWPS 101 P R L TP+VA+LFLWM +PLAMTI+FS+ RYNL+ PD GF GL+NY FL DP+F P+ Sbjct: 84 PARWLATPSVAVLFLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLDNYRFLATDPSFLPA 143 Query: 102 IGNTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIM 161 I +T LIG+VLAI+V GG L+AVLFD+ F G+GIARL+ I PFFVMPTV+ALIWKNMI+ Sbjct: 144 IWHTLALIGAVLAITVAGGVLMAVLFDRKFYGQGIARLIAIAPFFVMPTVSALIWKNMIL 203 Query: 162 HPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEA 221 HPVYG++A M LG++PIDW A+YP+ S+++IVAWQW+PFAFLIL TA+QSLD +QKEA Sbjct: 204 HPVYGLVARAMLALGMQPIDWFAQYPLASIVMIVAWQWLPFAFLILFTAIQSLDQEQKEA 263 Query: 222 AQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFL 281 A++DGAGP +FFYI LPHL+RAI VV+M+ETIFLLS+FAEI+TTT GGPG ATTNL++L Sbjct: 264 ARIDGAGPFAMFFYITLPHLRRAIAVVVMMETIFLLSIFAEIYTTTGGGPGDATTNLSYL 323 Query: 282 VYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLKGVNE 326 +Y++GLQQFD+G+ASAGGI AVVLAN+VSFFLVRMLARNLKG E Sbjct: 324 IYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYE 368