BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0658.p         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_332450.1| hypothetical protein BURPS1710b_1039 [Burkholde...    74   8e-12
ref|ZP_01461314.1| conserved hypothetical protein [Stigmatella a...    58   4e-07

>ref|YP_332450.1| hypothetical protein BURPS1710b_1039 [Burkholderia pseudomallei
           1710b]
 gb|ABA50513.1| hypothetical protein BURPS1710b_1039 [Burkholderia pseudomallei
           1710b]
          Length = 748

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 51/73 (69%)

Query: 2   QHAQGNALAIEQHAVAVADQVGDRLARHHHFTAPKVRPRTSCFCASQPSAMMGAIASREA 61
           +H   + LA++QHAVA+AD+    +    H TAP VRPRTSCFC S P+  +GA AS +A
Sbjct: 630 EHVGRDRLAVDQHAVAIADEHARVVRVRRHLTAPNVRPRTSCFCDSHPTTRIGATASSDA 689

Query: 62  ADSLAQNSPSGLE 74
           ADS AQ SPSGLE
Sbjct: 690 ADSFAQKSPSGLE 702


>ref|ZP_01461314.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gb|EAU67861.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 464

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 33/45 (73%)

Query: 30  HHFTAPKVRPRTSCFCASQPSAMMGAIASREAADSLAQNSPSGLE 74
           ++ TAPKVRPRTSCFC   P  MMGA A  E A+SLAQ  PSGLE
Sbjct: 373 NYLTAPKVRPRTSCFCEPHPITMMGAQARVETAESLAQKRPSGLE 417