BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0652.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773881.1| aerotaxis sensor receptor transmembrane prot... 820 0.0 ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transd... 529 e-148 ref|YP_003773941.1| aerotaxis sensor receptor transmembrane prot... 516 e-144 ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular r... 513 e-143 ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer ... 510 e-142 >ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61973.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 473/520 (90%), Positives = 498/520 (95%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MRMNMPVTGQERLLIDGKAIVSKTDL+GNITYVNPYFIEISGFEE ELLGAPQNLIRHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP EAFADMWATIKGGTPWTGLVKNRSK+GDHYWVRANVTPIRE+GQ+VGYMSVRTKPER Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 AV GAEKLYAS+RRGQAKGIALHRGEVVRTGLAGWLGKL RMQLN+RLN SMG+MLAIQ Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 181 IAVVLAGMMTLHQWWISALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGDLSVR 240 +AVV+AGM LHQWWISALAAA+ALLSIVQWIALR ALIKPL QALDITHAITGGDLSVR Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 Query: 241 IETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQAA 300 IET RHDELGRLL SLRQMNVNLTAIIGDVRSNVETI +ATREIA+GN+DLSRRTE QAA Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 Query: 301 NLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESSNK 360 NLEETASSMH+LA TVRQNADHA QAN+LAGTAS+IAMRGGDAVASTGTTMNEISESS+K Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 Query: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQL 420 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+AAAKEIK+L Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 Query: 421 IDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAITQM 480 ID SV KV++GNRQVEQA+STMRDIVASVQRVSGIM EI EATQQQSAGINQVHEAITQM Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 Query: 481 DASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFKFQRK 520 DASTQQNASLVEEAAAAA SL+EQT+RLLQAISVFKF R+ Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR89860.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 311/523 (59%), Positives = 392/523 (74%), Gaps = 4/523 (0%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MR N+PVT E L DG ++VSKTD +G ITYVNP F+E SGF+EEEL+G P NLIRHPD Sbjct: 1 MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP EAF DMW T+K G PWTGLVKNR K+GD YWV ANVTP+RE+ ++V +MSVR+KP R Sbjct: 61 MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 VEGA+ +YA + QAKG+A+ RG VV TG+ G L L + L +++ M ++A+ Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALI 180 Query: 181 IAVVLAGMMTLHQ----WWISALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGD 236 A+ + W + AA ++++ W +L A++++PL+ + T I GGD Sbjct: 181 AALGFVATTAVENAARMGWYAGATAAGVCVALLLWASLHASVVRPLRTLIAETRVIAGGD 240 Query: 237 LSVRIETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTE 296 L+ RHD++G+L +L+QMNVNL +++GD+R+NV++I +ATREIA GNMDLS RTE Sbjct: 241 LTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGRTE 300 Query: 297 QQAANLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISE 356 QA++LEETASSM Q A TV+QNAD A QANEL +AS +A +GG V G TM+EIS Sbjct: 301 SQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEISA 360 Query: 357 SSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKE 416 S+ KIVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVASEVRSLAQRS++AAKE Sbjct: 361 SAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAAKE 420 Query: 417 IKQLIDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEA 476 IK LIDDSV KV+ GNR V A +TM DIV+SVQRV+GIM+EI A+++QS GI+QV+ A Sbjct: 421 IKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVNLA 480 Query: 477 ITQMDASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFKFQR 519 I+QMD TQQNA+LVEEAAAAA SLEEQT L Q+ISVF+ R Sbjct: 481 ISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFRTGR 523 >ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62033.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 309/524 (58%), Positives = 392/524 (74%), Gaps = 11/524 (2%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MR N+P+T ERLL DGK+IVSKTDLQGNI YVNPYFIEISGFEEEEL+GAPQN++RHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP EAFADMWAT+K G PW GLVKNR K+GD+YWV+ANVTP+RE+G+ VGYMSVRT+P R Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 V+ AE Y GQA+G+ +HRG VVRTGL GWL L + + RL W+MGV+ + Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 I--------AVVLAGMMTLHQWWISALAAASALLSIVQWIALRAALIKPLQQALDITHAI 232 I AV+ AG W +A A AL+ + W L A+++ PLQ+A+ H + Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTA---AGALMLLASWAMLHASIVAPLQRAIKAVHGL 237 Query: 233 TGGDLSVRIETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLS 292 GGDL I+T ++G LL +L+Q+NVNL AIIGDVR NVE++ ++T EIA GNMDLS Sbjct: 238 AGGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLS 297 Query: 293 RRTEQQAANLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMN 352 RTE QA+ LEETASS+ + A TVRQNAD A A+ A +AS+IA RGG +V G TM Sbjct: 298 GRTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTME 357 Query: 353 EISESSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSA 412 EI +S+KIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+A Sbjct: 358 EIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAA 417 Query: 413 AAKEIKQLIDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQ 472 AAK+IK LIDDS AKVE GN+ V + + M ++ +V+ ++ M+EI A+ +QS GI Q Sbjct: 418 AAKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQ 477 Query: 473 VHEAITQMDASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFK 516 +++A+ +D +TQQNA+LVE+AAAAA +L +Q ++L QA+SVFK Sbjct: 478 LNQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFK 521 >ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] emb|CAL60665.1| Aerotaxis receptor [Herminiimonas arsenicoxydans] Length = 553 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 299/520 (57%), Positives = 378/520 (72%), Gaps = 4/520 (0%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MR N+PVT E +L D ++VSKTD +G I+YVNP FIE SGF EEELLG P NLIRHPD Sbjct: 1 MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MP +AF DMW T++ G PWTG+VKNR K+GD YWV ANVTP+RE ++V YMSVR+KP R Sbjct: 61 MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 V+ K+YA + G AKG+ + RGEVV +GL G L L + L R+ SM ++A+ Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALI 180 Query: 181 IAVVLAGMMTLH----QWWISALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGD 236 + + A + +W A A++ I+ W L ++++PL + + T I GGD Sbjct: 181 MTLGFAAATAVENAAWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIAGGD 240 Query: 237 LSVRIETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTE 296 + + RHD++G+L +L+QMNVNL +++GD+R NV++I +AT EIA GNMDLSRRTE Sbjct: 241 FTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSRRTE 300 Query: 297 QQAANLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISE 356 QA++LEETASSM Q A TV+QNAD+A QAN L +AS +A +GG V G TMNEIS Sbjct: 301 AQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNEISA 360 Query: 357 SSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKE 416 S+ +IVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVA EVRSLAQRS+ AA+E Sbjct: 361 SAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANAARE 420 Query: 417 IKQLIDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEA 476 IK LIDDSV KV VGNR V A +TM IV SV+ V+ IM+EI +A+++QS GI QV+ A Sbjct: 421 IKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQVNLA 480 Query: 477 ITQMDASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFK 516 I+ MD TQQNA+LVEEAAAAA SL+EQT L Q+IS+FK Sbjct: 481 ISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFK 520 >ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] gb|ABE50200.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] Length = 598 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 293/519 (56%), Positives = 383/519 (73%), Gaps = 4/519 (0%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLQGNITYVNPYFIEISGFEEEELLGAPQNLIRHPD 60 MR+NMPVT E L DG++I+S TDLQG ITY+N FIE+SGF E+EL+G+P NL+RHPD Sbjct: 1 MRINMPVTNNEYFLQDGQSILSTTDLQGKITYINQDFIEVSGFTEDELIGSPHNLVRHPD 60 Query: 61 MPPEAFADMWATIKGGTPWTGLVKNRSKSGDHYWVRANVTPIRESGQVVGYMSVRTKPER 120 MPPEAFADMWAT+K G PWTG+VKNR K+GD+YWV AN TP+R++G VVGYMSVR KP R Sbjct: 61 MPPEAFADMWATLKAGLPWTGMVKNRRKNGDYYWVLANATPMRQNGNVVGYMSVRVKPSR 120 Query: 121 AAVEGAEKLYASMRRGQAKGIALHRGEVVRTGLAGWLGKLGRMQLNTRLNWSMGVMLAIQ 180 VE A ++YA +R + G+ LHRGE+++T + + +M L T++ + +L Sbjct: 121 QQVEQASQIYARLRENKHHGLKLHRGEILKTDFISRVRRAMQMTLKTQVAVTTIAILLAM 180 Query: 181 IAVVLAGMMTLHQWWI--SALAAASALLSIVQWIALRAALIKPLQQALDITHAITGGDLS 238 + V+ A L ++ AL A A+LS+ ++L ++IKPL++A DI +A+ GDLS Sbjct: 181 VVVIAATFNGLDISFVVGGALVAMVAMLSLA--VSLSNSVIKPLREATDIANALASGDLS 238 Query: 239 VRIETGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETINMATREIATGNMDLSRRTEQQ 298 + + DE G LL +L QMNVN+ A+I D+R+N++ IN EIA GN DLS RTE Q Sbjct: 239 HKFSASKTDETGMLLRALNQMNVNIVAMITDIRTNMQRINTGVNEIANGNNDLSARTESQ 298 Query: 299 AANLEETASSMHQLAGTVRQNADHAGQANELAGTASSIAMRGGDAVASTGTTMNEISESS 358 A++LEETASSM +LA TV+QNAD+A QAN+L +ASS+A RGG+ + M ISES+ Sbjct: 299 ASSLEETASSMEELASTVKQNADNARQANQLVISASSVAARGGEVIGEVRDRMRLISESA 358 Query: 359 NKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIK 418 NKI DII +ID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RS+AAAKEIK Sbjct: 359 NKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAHRSAAAAKEIK 418 Query: 419 QLIDDSVAKVEVGNRQVEQASSTMRDIVASVQRVSGIMSEINEATQQQSAGINQVHEAIT 478 LI DSV +VE G V+QA +TM +IVASV+ V+ IM+EI+ A+ +QSAGI+QV+ A+ Sbjct: 419 GLISDSVERVEAGVEFVDQAGTTMTEIVASVRNVTDIMAEISAASIEQSAGIDQVNHAVN 478 Query: 479 QMDASTQQNASLVEEAAAAATSLEEQTMRLLQAISVFKF 517 MD TQ+NA+LVEE+AAAA +L + ++L +A SVFK Sbjct: 479 DMDEVTQRNAALVEESAAAADALRQDVLQLERAASVFKL 517