BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0648.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773885.1| hypothetical protein Hsero_0452 [Herbaspiril... 220 1e-55 ref|YP_003776528.1| hypothetical protein Hsero_3136 [Herbaspiril... 96 6e-18 gb|EGH12624.1| hypothetical protein PSYMP_21681 [Pseudomonas syr... 80 2e-13 ref|ZP_03571886.1| conserved hypothetical protein [Burkholderia ... 80 3e-13 ref|ZP_03588321.1| conserved hypothetical protein [Burkholderia ... 79 5e-13 >ref|YP_003773885.1| hypothetical protein Hsero_0452 [Herbaspirillum seropedicae SmR1] gb|ADJ61977.1| hypothetical protein Hsero_0452 [Herbaspirillum seropedicae SmR1] Length = 230 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 118/232 (50%), Positives = 148/232 (63%), Gaps = 3/232 (1%) Query: 1 MPVARAYFTQLFLGTLYAALFLCLIPMATGAAMLFLPAPQWQPWHPDRWQDSLHAHRETL 60 MPVA+AY TQLFL TLY I A L +PA Q W D + L Sbjct: 1 MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLPLVVPASLEQQLGVQPWMDQAASEPGEL 60 Query: 61 YWLAALLMAATLAWFCWGMGRVIGQAQPRWQPAYWTTTLLYMLVMSYGVAIAVVTSTRPH 120 Y + ++A L F M RV+ A+ + Y T TLLYML MSYG+AI V T P Sbjct: 61 YCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAPQ 120 Query: 121 YQQCQMYTEKLNGGLRHYRGEDFLVELCGTGSGD-NRHDQIRLRIFDEQGQWRAVRYFTV 179 Y+ C+ YT+KLNGG+R YRG F VELCG G + +R D++RLRI+DE G RAVRYF V Sbjct: 121 YRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFGV 180 Query: 180 QWGGHYPLLIDYARDHLAYFDASEGEDEEFVKVVAMPPTLADWLSTRIPLLD 231 QWG +P L++Y+RDHL+YFDA G++E+F +V+AMPPTLADW+ TRIPLLD Sbjct: 181 QWGRDFPALLEYSRDHLSYFDA--GDEEDFARVIAMPPTLADWVQTRIPLLD 230 >ref|YP_003776528.1| hypothetical protein Hsero_3136 [Herbaspirillum seropedicae SmR1] gb|ADJ64620.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 198 Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 14/158 (8%) Query: 82 VIGQAQPRWQPAYWTTTLLYMLVMSYGVAIAVVTS-TRPHYQQCQMYT--EKLNGGLRHY 138 V Q QP W+ T + L + +A+ ++ TRPHY +C Y + L+GG++ Sbjct: 46 VAAQPQP-WRDMQTRTVKFFGLALLVSLALGLIIHFTRPHYGRCDFYNRPDTLDGGVKLL 104 Query: 139 RGEDFLVELCGTGSGDN--RHDQIRLRIFDEQGQWRAVRYFTVQW----GGHYPLLIDYA 192 G + ++CGTG D D+I L++F++QG A RYF+V W G H PL Y Sbjct: 105 NGTSYRFQMCGTGGNDQDGTDDKIELKVFNDQGTLLARRYFSVNWYAGKGFHQPL--TYE 162 Query: 193 RDHLAYFDASEGEDEEFVKVVAMPPTLADWLSTRIPLL 230 D + Y D + E+ E+ K +++PPT DW+ R+PL Sbjct: 163 NDSVRYIDVT--ENSEYEKRLSIPPTKWDWIRARLPLF 198 >gb|EGH12624.1| hypothetical protein PSYMP_21681 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 150 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 20/147 (13%) Query: 94 YWTTTLLYMLVMSYGVAIAVVTSTRPHYQQCQMY--TEKLNGGLRHYRGEDFLVELCGTG 151 +W L+ + +S V A + S +Y CQ Y TEKLNGG + + + F + +CG G Sbjct: 13 FWPFLFLFFMSISL-VVYAALFSLLDNYS-CQHYNHTEKLNGGSKSFNNKTFTIAICGAG 70 Query: 152 ------SGDNRHDQIRLRIFDEQGQWRAVRYFTVQW---GGHYPLLIDYARDHLAYFDAS 202 +GD +++RL IFD+QG+ A RY+ V W GH PL + + D + Y D Sbjct: 71 VNNSLFNGDGM-ERVRLTIFDDQGELLARRYYKVSWYGQPGHEPLKV--SEDSIVYQDDK 127 Query: 203 EGEDEEFVKVVAMPPTLADWLSTRIPL 229 E D + MPPT +W+ R+PL Sbjct: 128 EQMDH----TIMMPPTRLEWIRARLPL 150 >ref|ZP_03571886.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03578118.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE07324.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE13694.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 226 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 13/142 (9%) Query: 96 TTTLLYMLVMSYGVAIAVVTSTRPHYQQCQMYTEKLNGGLRHYRGEDFLVELCGTGSGDN 155 T L L + Y +AI +T+ ++ Y +KLNGG++ G ++V +CG+G N Sbjct: 87 TIVTLVFLALFYLIAIRGITTDETDCRRFN-YNDKLNGGVKQVDGATYVVNICGSGRRGN 145 Query: 156 -----RHDQIRLRIFDEQGQWRAVRYFTVQWG---GHYPLLIDYARDHLAYFDASEGEDE 207 +++Q+++ + D G A R F V WG G+ P+ I + L YFDAS+ D Sbjct: 146 GRFADQNEQVKITVSDANGSTLATRLFYVFWGGRPGYDPIEIRSGK--LIYFDASDAYDS 203 Query: 208 EFVKVVAMPPTLADWLSTRIPL 229 + +++PPT DW++ R+PL Sbjct: 204 --TRSISLPPTTFDWVAARMPL 223 >ref|ZP_03588321.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gb|EED97269.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 226 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 13/142 (9%) Query: 96 TTTLLYMLVMSYGVAIAVVTSTRPHYQQCQMYTEKLNGGLRHYRGEDFLVELCGTGSGDN 155 T L L + Y +AI +T+ ++ Y +KLNGG++ G ++V +CG+G N Sbjct: 87 TIVTLVFLALFYLIAIRGITTDETDCRRFN-YNDKLNGGVKQVDGATYVVNICGSGRRGN 145 Query: 156 -----RHDQIRLRIFDEQGQWRAVRYFTVQWG---GHYPLLIDYARDHLAYFDASEGEDE 207 +++Q+++ + D G A R F V WG G+ P+ I + L YFDAS+ D Sbjct: 146 GRFADQNEQVKITVSDANGSTLATRLFYVFWGGRPGYDPIEIYSGK--LIYFDASDAYDS 203 Query: 208 EFVKVVAMPPTLADWLSTRIPL 229 + +++PPT DW++ R+PL Sbjct: 204 --TRSISLPPTTFDWIAARMPL 223