BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0647.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773886.1| Rossmann fold nucleotide-binding protein [He... 494 e-138 ref|ZP_01916357.1| hypothetical protein LMED105_15214 [Limnobact... 328 6e-88 ref|YP_003909771.1| hypothetical protein BC1003_4548 [Burkholder... 326 2e-87 ref|YP_001860578.1| hypothetical protein Bphy_4418 [Burkholderia... 326 2e-87 ref|ZP_04946911.1| hypothetical protein BDAG_02861 [Burkholderia... 326 2e-87 >ref|YP_003773886.1| Rossmann fold nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ61978.1| Rossmann fold nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 245/248 (98%), Positives = 248/248 (100%) Query: 1 MEQRGKNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARI 60 MEQRGKNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARI Sbjct: 1 MEQRGKNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARI 60 Query: 61 KPDNPHYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHG 120 +PDNPHYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHG Sbjct: 61 RPDNPHYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHG 120 Query: 121 NAWQDISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILV 180 NAWQDISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILV Sbjct: 121 NAWQDISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILV 180 Query: 181 GSEFWAGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKSKPAETQQEA 240 GS+FWAGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEK+KPAETQQEA Sbjct: 181 GSQFWAGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKAKPAETQQEA 240 Query: 241 ERQSGMYL 248 ERQSGMYL Sbjct: 241 ERQSGMYL 248 >ref|ZP_01916357.1| hypothetical protein LMED105_15214 [Limnobacter sp. MED105] gb|EDM82433.1| hypothetical protein LMED105_15214 [Limnobacter sp. MED105] Length = 245 Score = 328 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 156/240 (65%), Positives = 197/240 (82%), Gaps = 1/240 (0%) Query: 1 MEQRGKNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARI 60 M + KN+P LR + E++TA KARESWHVL IMAEFIE+TE+LS +RP+VSIFGSAR Sbjct: 1 MTTKNKNIPTLRHLPSKEQSTAVKARESWHVLGIMAEFIEATEKLSAIRPSVSIFGSART 60 Query: 61 KPDNPHYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHG 120 D+P+Y L IAR +SD+G+AVISGGGPGIMEAANKGA+ G SPSVGLNIELP EQ G Sbjct: 61 PVDHPYYTLTENIARALSDSGFAVISGGGPGIMEAANKGAHAGESPSVGLNIELPFEQSG 120 Query: 121 NAWQDISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILV 180 NA+QDISL+FRHFFARKVAF KYA AYVV+PGGFGTLDE+ EALTL+QT K R +P+ILV Sbjct: 121 NAYQDISLTFRHFFARKVAFAKYASAYVVMPGGFGTLDEMFEALTLIQTNKGRRIPIILV 180 Query: 181 GSEFWAGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKS-KPAETQQE 239 GS+FWAGL+DW+K+ L+ +GMISP D++L +V++ P EVL I F+ +++ P++++ E Sbjct: 181 GSKFWAGLIDWVKSHLLGEGMISPGDMDLFEVVETPEEVLKCIFHFYEKRTFNPSDSETE 240 >ref|YP_003909771.1| hypothetical protein BC1003_4548 [Burkholderia sp. CCGE1003] gb|ADN60480.1| Conserved hypothetical protein CHP00730 [Burkholderia sp. CCGE1003] Length = 247 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 156/239 (65%), Positives = 195/239 (81%), Gaps = 2/239 (0%) Query: 6 KNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARIKPDNP 65 K +P LR + D ERATAKKAR SW + TIMAEFIE+TE LSE+RPAVSI+GSAR+KP++P Sbjct: 5 KVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYLSEIRPAVSIYGSARLKPNSP 64 Query: 66 HYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHGNAWQD 125 +Y+L +IAR +SDAG+AVISGGGPGIMEAANKGA+ G +PSVGLNIELPHEQ GN WQD Sbjct: 65 YYKLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELPHEQSGNQWQD 124 Query: 126 ISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILVGSEFW 185 ISL FRHFF RKV FVK +DA +V+PGGFGTLDEL E LTL+QT KSR +P+ILVG+EFW Sbjct: 125 ISLRFRHFFTRKVTFVKNSDAVIVMPGGFGTLDELAEVLTLIQTKKSRHVPIILVGAEFW 184 Query: 186 AGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEK--SKPAETQQEAER 242 GL+ W K L G+I+P D++L+QVID+P +VL A+ KF+ ++ ++P T+ E +R Sbjct: 185 EGLLAWFKNSLTPMGLINPTDIDLMQVIDDPDQVLEAVLKFYEDREGAEPQPTKSEEDR 243 >ref|YP_001860578.1| hypothetical protein Bphy_4418 [Burkholderia phymatum STM815] gb|ACC73532.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 247 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 156/243 (64%), Positives = 195/243 (80%) Query: 6 KNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARIKPDNP 65 K +P LR + D ERATAKKAR SW + TIMAEFIE+TE LSE+RPAVSI+GSAR+KP++P Sbjct: 5 KVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYLSEIRPAVSIYGSARLKPNSP 64 Query: 66 HYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHGNAWQD 125 +Y+L IAR +SDAG+AVISGGGPGIMEAANKGA+ G +PSVGLNIELPHEQ GN WQD Sbjct: 65 YYKLATTIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELPHEQSGNQWQD 124 Query: 126 ISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILVGSEFW 185 ISL FRHFF RKV FVK +DA +V+PGGFGTLDEL E LTL+QT KSR +P+ILVG+EFW Sbjct: 125 ISLRFRHFFTRKVTFVKNSDAVIVMPGGFGTLDELAEVLTLIQTKKSRHVPIILVGAEFW 184 Query: 186 AGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKSKPAETQQEAERQSG 245 GL+ W +++LV G+I+P D+NL+QVID+P +VL A+ F+ E+ +P +++ Sbjct: 185 KGLLAWFESQLVPMGLINPDDMNLMQVIDDPDQVLEAVLAFYEEREEPEAHPAKSDEDRM 244 Query: 246 MYL 248 YL Sbjct: 245 FYL 247 >ref|ZP_04946911.1| hypothetical protein BDAG_02861 [Burkholderia dolosa AUO158] gb|EAY70082.1| hypothetical protein BDAG_02861 [Burkholderia dolosa AUO158] Length = 253 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 156/232 (67%), Positives = 194/232 (83%), Gaps = 1/232 (0%) Query: 1 MEQRGKNVPRLREVGDIERATAKKARESWHVLTIMAEFIESTERLSELRPAVSIFGSARI 60 M +R K +P LR + D ERATAKKAR SW + TIMAEFIE+TE LSE+RPAVSI+GSAR+ Sbjct: 1 MNKR-KVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYLSEIRPAVSIYGSARL 59 Query: 61 KPDNPHYQLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHEQHG 120 KPD PHY+L V+IAR +SDAG+AVISGGGPGIMEAANKGA+ G +PSVGLNIELPHEQ G Sbjct: 60 KPDTPHYKLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELPHEQAG 119 Query: 121 NAWQDISLSFRHFFARKVAFVKYADAYVVLPGGFGTLDELTEALTLMQTGKSRMMPVILV 180 N +QDISL FRHFF RKV FVK +DA +V+PGGFGTLDEL+E LTL+QT KSR++P+ILV Sbjct: 120 NHYQDISLRFRHFFTRKVTFVKNSDAVIVMPGGFGTLDELSEVLTLIQTKKSRLVPIILV 179 Query: 181 GSEFWAGLVDWIKTRLVDDGMISPKDVNLLQVIDEPAEVLAAIQKFHAEKSK 232 GSEFW GL+ W + +L+ G+I+P+D+NL+QVID+P +VL A+ F+ + + Sbjct: 180 GSEFWQGLLQWFRDQLIPMGLINPEDMNLMQVIDDPDQVLDAVLAFYEDSGE 231