BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0642.p (452 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773891.1| nitrate/sulfonate/bicarbonate ABC transporte... 607 e-172 ref|YP_559006.1| nitrate/sulfonate/bicarbonate ABC transporter p... 445 e-123 ref|ZP_06845622.1| NMT1/THI5 like domain protein [Burkholderia s... 444 e-122 ref|ZP_02881374.1| NMT1/THI5 like domain protein [Burkholderia g... 427 e-117 ref|YP_001237411.1| ABC transporter periplasmic-binding protein ... 398 e-108 >ref|YP_003773891.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61983.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 329 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 314/329 (95%), Positives = 323/329 (98%) Query: 124 MQKRTFLRHLAALWLGAAALSVTGLAHAEDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG 183 MQKR FLR AALWLGAAALS+TGLA A+DKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG Sbjct: 1 MQKRRFLRCAAALWLGAAALSITGLAQAQDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYG 60 Query: 184 MDVTIKMGGPQVNNMQILVAGQADFSMGYDFAVMKGIEQGLPLVTVGTSFQSDLQGMMTH 243 MDVTIKMGGPQVNNMQILVAGQADFSMGYDF VMKG+EQGLPLVTVGTSFQSDLQGMMTH Sbjct: 61 MDVTIKMGGPQVNNMQILVAGQADFSMGYDFTVMKGVEQGLPLVTVGTSFQSDLQGMMTH 120 Query: 244 DDVSSLGGLKSKTILVAGSGQSSWWPWLKSKYGYTDAQSKAYTFNLQPFFADPNIAQQAY 303 DDV+SLGGLK+KTILVAGSGQSSWWPWLK+KYGYTDAQS+AYTFNLQPFFADPNIAQQAY Sbjct: 121 DDVASLGGLKNKTILVAGSGQSSWWPWLKAKYGYTDAQSRAYTFNLQPFFADPNIAQQAY 180 Query: 304 PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY 363 PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY Sbjct: 181 PSSELFQADKAGVKSKFFLFASEGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSY 240 Query: 364 LEDPAPANALIKADNKNMGDEQLAYALGKLKELKVVTGGDAAKLGIGVMTDERWKQTYDV 423 LEDPAP NALIKADNKNMGDEQLAYALGKLKELKVVTGGDAA+LGIGVMTDERWKQTY+V Sbjct: 241 LEDPAPGNALIKADNKNMGDEQLAYALGKLKELKVVTGGDAARLGIGVMTDERWKQTYEV 300 Query: 424 MVATGLLKAGTDYHKAYTTQFVKDMKVMP 452 MVATGLLKAGTDYHKAYTTQFVKDMKVMP Sbjct: 301 MVATGLLKAGTDYHKAYTTQFVKDMKVMP 329 >ref|YP_559006.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE30954.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 343 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 211/304 (69%), Positives = 252/304 (82%) Query: 149 AHAEDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADF 208 AHA+D V+LL++WYAQAEHGGFYQAVA GIYKKYG+DVTI+MGGPQVN MQ+L GQADF Sbjct: 40 AHADDHVSLLTSWYAQAEHGGFYQAVATGIYKKYGLDVTIRMGGPQVNGMQLLAGGQADF 99 Query: 209 SMGYDFAVMKGIEQGLPLVTVGTSFQSDLQGMMTHDDVSSLGGLKSKTILVAGSGQSSWW 268 +GYDF V+ G+E G+P+ TV +FQ D QGMMTH DV+SL GLK+KTILVAGSG+++WW Sbjct: 100 LLGYDFQVLSGVEAGIPVTTVAAAFQYDPQGMMTHADVTSLAGLKNKTILVAGSGRTTWW 159 Query: 269 PWLKSKYGYTDAQSKAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFASEGY 328 PWLK+KYGYT+AQ++ YTFNLQPFFADPN+A QAYPSSE FQA++A + FFLFA +GY Sbjct: 160 PWLKAKYGYTEAQARPYTFNLQPFFADPNVAMQAYPSSETFQAEQAHANAHFFLFADDGY 219 Query: 329 PPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPANALIKADNKNMGDEQLAY 388 PPY TTIVT++ TV +PD+V RFVKA+ EGWKSYL DPAP NALIK DN M D QLAY Sbjct: 220 PPYNTTIVTMRDTVKNRPDVVARFVKASMEGWKSYLNDPAPGNALIKKDNPQMSDAQLAY 279 Query: 389 ALGKLKELKVVTGGDAAKLGIGVMTDERWKQTYDVMVATGLLKAGTDYHKAYTTQFVKDM 448 + +LK+LK+VTGGDAA GIG MTD RWK+T+D MV LLK TDYH AYT QF+++ Sbjct: 280 GVAQLKKLKLVTGGDAATQGIGTMTDARWKKTFDYMVDARLLKPATDYHAAYTLQFIQNA 339 Query: 449 KVMP 452 KVMP Sbjct: 340 KVMP 343 >ref|ZP_06845622.1| NMT1/THI5 like domain protein [Burkholderia sp. Ch1-1] gb|EFG66772.1| NMT1/THI5 like domain protein [Burkholderia sp. Ch1-1] Length = 407 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 207/304 (68%), Positives = 251/304 (82%) Query: 149 AHAEDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADF 208 AHA+D V+LL++WYAQAEHGGFYQAVA GIY+KYG+DVTI+MGGPQVN MQ+L GQADF Sbjct: 104 AHADDHVSLLTSWYAQAEHGGFYQAVATGIYRKYGLDVTIRMGGPQVNGMQLLAGGQADF 163 Query: 209 SMGYDFAVMKGIEQGLPLVTVGTSFQSDLQGMMTHDDVSSLGGLKSKTILVAGSGQSSWW 268 +GYDF V+ +E G+P+ TV +FQ D QGMMTH DV+SL GLK+KTILVAGSG+++WW Sbjct: 164 LLGYDFQVLSSVEAGIPVATVAAAFQYDPQGMMTHADVTSLAGLKNKTILVAGSGRTTWW 223 Query: 269 PWLKSKYGYTDAQSKAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFASEGY 328 PWLK+KYGYT+AQ++ YTFNLQPFFADPN+A QAYPSSE FQA++A + FFLFA +GY Sbjct: 224 PWLKAKYGYTEAQARPYTFNLQPFFADPNVAMQAYPSSETFQAEQAHANAHFFLFADDGY 283 Query: 329 PPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPANALIKADNKNMGDEQLAY 388 PPY +TIVT++ T+ +PD+V RFVKA+ EGWKSYL DPAP NALIK DN M D QLAY Sbjct: 284 PPYNSTIVTMRDTMKNRPDVVARFVKASMEGWKSYLNDPAPGNALIKKDNPQMSDAQLAY 343 Query: 389 ALGKLKELKVVTGGDAAKLGIGVMTDERWKQTYDVMVATGLLKAGTDYHKAYTTQFVKDM 448 + +LK+LK+VTGGDAA GIG MTD RWK+T+D MV LLK TDYH AYT QF+++ Sbjct: 344 GVAQLKKLKLVTGGDAATQGIGTMTDARWKKTFDYMVDAKLLKPATDYHAAYTLQFIQNA 403 Query: 449 KVMP 452 KVMP Sbjct: 404 KVMP 407 >ref|ZP_02881374.1| NMT1/THI5 like domain protein [Burkholderia graminis C4D1M] gb|EDT12803.1| NMT1/THI5 like domain protein [Burkholderia graminis C4D1M] Length = 323 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 200/298 (67%), Positives = 241/298 (80%) Query: 155 VTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADFSMGYDF 214 +T+L++WYAQAEHGGFYQAVA G+YK+ G+DVTI+MGGPQVN MQ+LV GQADF +GYDF Sbjct: 26 ITVLTSWYAQAEHGGFYQAVATGLYKRAGLDVTIRMGGPQVNGMQLLVGGQADFILGYDF 85 Query: 215 AVMKGIEQGLPLVTVGTSFQSDLQGMMTHDDVSSLGGLKSKTILVAGSGQSSWWPWLKSK 274 V+ IE G+P+ TV SFQ D QGM+THDDV L LK KTILVAGSG++SWWPWLK K Sbjct: 86 QVLSSIEAGIPVETVAASFQFDPQGMLTHDDVKGLSDLKGKTILVAGSGRTSWWPWLKEK 145 Query: 275 YGYTDAQSKAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFASEGYPPYGTT 334 YGYTD Q++ YTFNLQPFF D N+A QAYPSSE FQA++A VK+ FFLFA +GYPPY TT Sbjct: 146 YGYTDGQTRPYTFNLQPFFVDRNVAMQAYPSSEPFQAERANVKTHFFLFADDGYPPYNTT 205 Query: 335 IVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPANALIKADNKNMGDEQLAYALGKLK 394 IV ++K++ KPD+V RFVKA+ EGWKSYL +PAP N LI+ DN M D QLA+ + +LK Sbjct: 206 IVGMKKSIDAKPDVVARFVKASMEGWKSYLSNPAPGNELIRKDNPEMTDAQLAFGVAQLK 265 Query: 395 ELKVVTGGDAAKLGIGVMTDERWKQTYDVMVATGLLKAGTDYHKAYTTQFVKDMKVMP 452 LK+VTGGDAA LGIG MTD RWK+TYD MV+ LLK GTDY AYT ++V++ KVMP Sbjct: 266 TLKLVTGGDAATLGIGAMTDARWKKTYDYMVSAKLLKPGTDYKSAYTLKYVQNAKVMP 323 >ref|YP_001237411.1| ABC transporter periplasmic-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ33505.1| Putative ABC transporter, periplasmic binding protein [Bradyrhizobium sp. BTAi1] Length = 314 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 192/302 (63%), Positives = 235/302 (77%) Query: 149 AHAEDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQADF 208 A A DKVT L++W+AQAEHGGFYQA A G+Y+K G+DVTIK GGPQVN Q+L+AG ADF Sbjct: 10 ASAADKVTFLTSWFAQAEHGGFYQAKATGLYEKAGLDVTIKTGGPQVNGTQLLLAGDADF 69 Query: 209 SMGYDFAVMKGIEQGLPLVTVGTSFQSDLQGMMTHDDVSSLGGLKSKTILVAGSGQSSWW 268 MGYD V+KG EQ LPLVTV +SFQ DLQG+M HDDV+ L LK + +L+AGS + ++W Sbjct: 70 IMGYDIQVLKGREQKLPLVTVASSFQFDLQGIMAHDDVADLAALKGRPVLIAGSSRVTFW 129 Query: 269 PWLKSKYGYTDAQSKAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFASEGY 328 PWL++KYGYTD Q + YTFNLQPFFAD IAQQ Y SSE +QA + K KFFLFA GY Sbjct: 130 PWLRAKYGYTDDQIRPYTFNLQPFFADKTIAQQGYLSSEPYQALQQNEKVKFFLFADGGY 189 Query: 329 PPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPANALIKADNKNMGDEQLAY 388 PPYG+TIVT +K +A KPD+V RFVKA+ EGW+ Y+E PAP N LIKADN M D Q+A+ Sbjct: 190 PPYGSTIVTTEKMIAEKPDVVARFVKASLEGWRDYMETPAPGNGLIKADNPKMTDGQIAF 249 Query: 389 ALGKLKELKVVTGGDAAKLGIGVMTDERWKQTYDVMVATGLLKAGTDYHKAYTTQFVKDM 448 AL KLKE K V GGDAAKLGIG++T +R+KQ YD +VA LL A T++ KA+ +FVKD+ Sbjct: 250 ALEKLKETKAVDGGDAAKLGIGIITADRYKQIYDFLVAGELLDAKTEWQKAFDDRFVKDL 309 Query: 449 KV 450 K+ Sbjct: 310 KI 311