BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0640.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773893.1| phenylpropionate dioxygenase [Herbaspirillum... 710 0.0 ref|NP_745356.1| Rieske 2Fe-2S family protein [Pseudomonas putid... 533 e-149 gb|ADR60166.1| Rieske 2Fe-2S family protein [Pseudomonas putida ... 528 e-148 ref|YP_001749453.1| Rieske (2Fe-2S) domain-containing protein [P... 525 e-147 emb|CAZ90195.1| putative ring-hydroxylating dioxygenase with Rie... 522 e-146 >ref|YP_003773893.1| phenylpropionate dioxygenase [Herbaspirillum seropedicae SmR1] gb|ADJ61985.1| phenylpropionate dioxygenase (Rieske 2Fe-2S family) protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 330/343 (96%), Positives = 339/343 (98%) Query: 1 MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60 MLVTQQKVLR+FWYALMP+ QL+ GPQPFTLLGEKLVVWLKEDG+PAALQDRCCHRTARL Sbjct: 1 MLVTQQKVLRRFWYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARL 60 Query: 61 SKGFVENGNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALEE 120 SKGFVENGNIVCGYHGWTFNGEGACVRVPQ+ DGSVP+GACVKSYFCKERYGYVWVALEE Sbjct: 61 SKGFVENGNIVCGYHGWTFNGEGACVRVPQNADGSVPAGACVKSYFCKERYGYVWVALEE 120 Query: 121 PLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE 180 PLRDIPEFPE+GAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE Sbjct: 121 PLRDIPEFPEEGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKPE 180 Query: 181 KYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG 240 KYEI ETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG Sbjct: 181 KYEIAETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPESG 240 Query: 241 RHHIIYNCATPIDDGAIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDAC 300 RHHIIYNCATPIDDG+IMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDAC Sbjct: 241 RHHIIYNCATPIDDGSIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDAC 300 Query: 301 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRIHPAA 343 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFR+HPAA Sbjct: 301 IDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRLHPAA 343 >ref|NP_745356.1| Rieske 2Fe-2S family protein [Pseudomonas putida KT2440] gb|AAN68820.1|AE016514_9 Rieske 2Fe-2S family protein [Pseudomonas putida KT2440] Length = 341 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 239/341 (70%), Positives = 284/341 (83%), Gaps = 1/341 (0%) Query: 1 MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60 MLVT+Q VLR+FWYAL+P+T L+DGP+PFTLLGE LV+W + DG+P A++DRCCHRTA+L Sbjct: 1 MLVTKQPVLRRFWYALLPMTALEDGPKPFTLLGEALVLWKRPDGTPVAMRDRCCHRTAKL 60 Query: 61 SKGFVE-NGNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALE 119 SKGFV GNI CGYHGW ++ G CV++PQS G++P GA VK+Y C+E+YGY WV+L+ Sbjct: 61 SKGFVSAEGNIACGYHGWEYDCTGTCVKIPQSPTGAIPPGAAVKAYHCQEKYGYAWVSLD 120 Query: 120 EPLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKP 179 +PL+ IPEFPEDGAPGYRRIFQFYE W+TS LR+MENSFDNSHFS+VH+A FGL+DQP+P Sbjct: 121 DPLQPIPEFPEDGAPGYRRIFQFYEEWKTSPLRVMENSFDNSHFSFVHKANFGLFDQPQP 180 Query: 180 EKYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPES 239 YE ETDYGFEAETRVPI+N AS R+TG+T T RH+ NR+YLPF RRFGC YP+S Sbjct: 181 ASYEFRETDYGFEAETRVPIRNPEASFRITGTTEPITQRHLLNRYYLPFSRRFGCMYPDS 240 Query: 240 GRHHIIYNCATPIDDGAIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDA 299 G HHIIYNCATPIDD +ML QWLYRND+EE+CS ELI WDA I EDR+ILEATDPDA Sbjct: 241 GIHHIIYNCATPIDDNRLMLVQWLYRNDSEEQCSTQELIDWDAAITAEDRDILEATDPDA 300 Query: 300 CIDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRIH 340 C+D RRR E HM SD+PGL++RR LL LLE HGESEVF H Sbjct: 301 CVDTRRRVELHMPSDKPGLVIRRQLLGLLEAHGESEVFLSH 341 >gb|ADR60166.1| Rieske 2Fe-2S family protein [Pseudomonas putida BIRD-1] Length = 341 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 236/341 (69%), Positives = 283/341 (82%), Gaps = 1/341 (0%) Query: 1 MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60 MLVT+Q VLR+FWYAL+P+T L+DGP+PFTLLGE LV+W + DG+P A+QDRCCHRTA+L Sbjct: 1 MLVTKQPVLRRFWYALLPMTALEDGPRPFTLLGEALVLWKRPDGTPVAMQDRCCHRTAKL 60 Query: 61 SKGFVE-NGNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALE 119 SKGFV GNI CGYHGW ++ G CV++PQ+ G++P GA VK+Y C+E+YGY WV+L+ Sbjct: 61 SKGFVSAEGNIACGYHGWEYDCTGTCVKIPQNPTGAIPPGAAVKAYHCQEKYGYAWVSLD 120 Query: 120 EPLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKP 179 +PL+ IPEFPEDG PGYRRIFQFYE W+TS LR+MENSFDNSHFS+VH+A FGL+DQP+P Sbjct: 121 DPLQPIPEFPEDGTPGYRRIFQFYEEWKTSPLRVMENSFDNSHFSFVHKANFGLFDQPQP 180 Query: 180 EKYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPES 239 YE ETDYGFEAETRVPI+N AS R+TG+T T RH+ NR+YLPF RRFGC YP+S Sbjct: 181 ASYEFRETDYGFEAETRVPIRNPEASFRITGTTEPITQRHLLNRYYLPFSRRFGCMYPDS 240 Query: 240 GRHHIIYNCATPIDDGAIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDA 299 G HHIIYNCATPIDD +ML QWLYRND+E++CS ELI WDA I EDR+ILEATDPDA Sbjct: 241 GIHHIIYNCATPIDDNRLMLVQWLYRNDSEDQCSTQELIDWDAAITAEDRDILEATDPDA 300 Query: 300 CIDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRIH 340 C+D RRR E HM SD+PGL++RR LL LLE +GESEVF H Sbjct: 301 CVDTRRRVELHMPSDKPGLVIRRQLLGLLEANGESEVFLSH 341 >ref|YP_001749453.1| Rieske (2Fe-2S) domain-containing protein [Pseudomonas putida W619] gb|ACA73084.1| Rieske (2Fe-2S) domain protein [Pseudomonas putida W619] Length = 341 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 235/341 (68%), Positives = 281/341 (82%), Gaps = 1/341 (0%) Query: 1 MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60 MLVT+Q VLR+FWYAL+P+ L DGP+PFTLLGE LV+W + DG+P A++DRCCHRTA+L Sbjct: 1 MLVTKQPVLRRFWYALLPMAALDDGPKPFTLLGEALVLWKRPDGTPVAMRDRCCHRTAKL 60 Query: 61 SKGFV-ENGNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALE 119 SKGFV E+GNI CGYHGW ++ GACV++PQ+ G++P GA VK+Y C+E+YGY WVAL+ Sbjct: 61 SKGFVSEDGNIACGYHGWEYDCSGACVKIPQNPTGAIPPGAAVKAYHCQEKYGYAWVALD 120 Query: 120 EPLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKP 179 +PL+ IP+FPEDGAPGYRRIFQFYE W+TS LR+MENSFDNSHFS+VH+A FGL+DQP+P Sbjct: 121 DPLQPIPDFPEDGAPGYRRIFQFYEEWKTSPLRVMENSFDNSHFSFVHKANFGLFDQPQP 180 Query: 180 EKYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPES 239 YE ETDYGFEAETRVPI+N S +TG+ A T RH+ NR+YLPF RRFGC YP+S Sbjct: 181 ASYEFRETDYGFEAETRVPIRNPEESFAITGTRAPITERHLVNRYYLPFSRRFGCMYPDS 240 Query: 240 GRHHIIYNCATPIDDGAIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDA 299 G HHIIYNCATPIDDG +ML QWLYRND+E +C LI WDA I EDR+ILEATDPDA Sbjct: 241 GIHHIIYNCATPIDDGRLMLVQWLYRNDSEADCPTQALIDWDAAITAEDRDILEATDPDA 300 Query: 300 CIDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFRIH 340 C+D RRR E HM SD+PGL++RR LL LLE HGESEVF H Sbjct: 301 CVDTRRRVELHMPSDKPGLVIRRQLLGLLEAHGESEVFASH 341 >emb|CAZ90195.1| putative ring-hydroxylating dioxygenase with Rieske 2Fe-2S domain [Thiomonas sp. 3As] Length = 353 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 237/339 (69%), Positives = 282/339 (83%), Gaps = 1/339 (0%) Query: 1 MLVTQQKVLRKFWYALMPVTQLKDGPQPFTLLGEKLVVWLKEDGSPAALQDRCCHRTARL 60 MLVTQQ VLR+FWYA+MP+ L+ GP+PFTLLGEKLV+W DG PAAL+DRCCHRTA+L Sbjct: 1 MLVTQQPVLRRFWYAIMPLHDLESGPKPFTLLGEKLVLWKTPDGQPAALRDRCCHRTAQL 60 Query: 61 SKGFVEN-GNIVCGYHGWTFNGEGACVRVPQSVDGSVPSGACVKSYFCKERYGYVWVALE 119 SKGFV+ G IVCGYHGWT++ G CVR+PQ+ D ++P+GA V+S+ C RYGY WVALE Sbjct: 61 SKGFVDAAGCIVCGYHGWTYDCGGNCVRIPQNPDMAIPAGARVESFHCAARYGYAWVALE 120 Query: 120 EPLRDIPEFPEDGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFGLYDQPKP 179 +PL IP+FPE+GA G+RR+FQFYERW TS LR MEN+FDNSHFSYVH+A FG+++QP+P Sbjct: 121 KPLAPIPDFPEEGAEGFRRVFQFYERWATSPLRFMENAFDNSHFSYVHKANFGIFEQPQP 180 Query: 180 EKYEIEETDYGFEAETRVPIKNVPASHRVTGSTADTTVRHMFNRWYLPFVRRFGCTYPES 239 Y IE T+ GFEAET VPI+N + HR+TGST + T RH+ NRW+LPFVRRFGC YPES Sbjct: 181 SSYRIEATEDGFEAETLVPIRNPASGHRITGSTGEFTQRHLLNRWWLPFVRRFGCVYPES 240 Query: 240 GRHHIIYNCATPIDDGAIMLSQWLYRNDTEEECSEAELIAWDAPILVEDREILEATDPDA 299 G HHIIYNCATPIDD IML+QWLYRNDTE +CS ELIAWD PI+ EDR+ILEATDPDA Sbjct: 241 GLHHIIYNCATPIDDDHIMLAQWLYRNDTEADCSTQELIAWDRPIVDEDRDILEATDPDA 300 Query: 300 CIDVRRRQEFHMASDRPGLIMRRMLLQLLEEHGESEVFR 338 C+D RRR EFHM SD+PGL+MR+ LL+LL HGE EVFR Sbjct: 301 CVDTRRRMEFHMQSDKPGLMMRKRLLELLHAHGEEEVFR 339