BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0638.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporte... 412 e-113 ref|ZP_02881377.1| binding-protein-dependent transport systems i... 326 3e-87 ref|YP_004157683.1| binding-protein-dependent transport systems ... 308 9e-82 ref|YP_046150.1| ABC transporter permease [Acinetobacter sp. ADP... 307 1e-81 ref|YP_002946631.1| binding-protein-dependent transport systems ... 305 5e-81 >ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61987.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 257/267 (96%), Positives = 260/267 (97%) Query: 41 MKPNTDPLVNRPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADWG 100 MKPNTDPLVNRPGFWRV APL IGIALLLMWQIVCTLLEVPPYLVPTPALI KTL ADW Sbjct: 1 MKPNTDPLVNRPGFWRVAAPLIIGIALLLMWQIVCTLLEVPPYLVPTPALIVKTLAADWS 60 Query: 101 MLMESLLVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLI 160 MLM SLLVTLKITFLAF LAV+LGV+IAFVFVQSRFIE+SLFPYAIILQVTPIVAIAPLI Sbjct: 61 MLMASLLVTLKITFLAFALAVVLGVAIAFVFVQSRFIEISLFPYAIILQVTPIVAIAPLI 120 Query: 161 IIWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPS 220 IIWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPS Sbjct: 121 IIWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPS 180 Query: 221 ALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLIT 280 ALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLIT Sbjct: 181 ALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLIT 240 Query: 281 LTGILLFWLMSALSRAMLAGWHESEMA 307 LTGILLFWLMSALSRAMLAGWHESEMA Sbjct: 241 LTGILLFWLMSALSRAMLAGWHESEMA 267 >ref|ZP_02881377.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12806.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 282 Score = 326 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 190/278 (68%), Positives = 224/278 (80%), Gaps = 1/278 (0%) Query: 29 ITSRWPTSKETAMKPNTDPLVNRPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTP 88 I +R ++ A+ P PL+ RPG + +AP +G+ +L MW+ C + +VP YLVP P Sbjct: 6 IVNRAAANERKAVNPRR-PLLQRPGAMKALAPWVVGVLMLSMWEAACAVFDVPVYLVPAP 64 Query: 89 ALIAKTLVADWGMLMESLLVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIIL 148 IA+ LV D ML +L TL+IT LAF LA +LGV+IA VF QS IE S FPYAI+L Sbjct: 65 HDIARQLVVDAPMLFAALFATLRITLLAFALATVLGVAIALVFAQSPLIEASFFPYAILL 124 Query: 149 QVTPIVAIAPLIIIWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKAT 208 QVTPIVAIAPLIIIWVKDTT AL +CAT++ALFPIISNT LGLRSVNPGL+NLFR+N+AT Sbjct: 125 QVTPIVAIAPLIIIWVKDTTFALVICATLVALFPIISNTALGLRSVNPGLVNLFRINRAT 184 Query: 209 RWQTLRRLRIPSALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLN 268 RWQTL RLR+PSALPYFFGGLRISSGL+LIGAVVAEFVAGTGGTGSGLAYQILQAGFQLN Sbjct: 185 RWQTLTRLRVPSALPYFFGGLRISSGLSLIGAVVAEFVAGTGGTGSGLAYQILQAGFQLN 244 Query: 269 IPRLFAALLLITLTGILLFWLMSALSRAMLAGWHESEM 306 IPRLFAAL+LIT+TG++LF + +SR L GWHESE+ Sbjct: 245 IPRLFAALMLITVTGVVLFGITVWVSRLGLRGWHESEL 282 >ref|YP_004157683.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU39572.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 268 Score = 308 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 177/261 (67%), Positives = 219/261 (83%) Query: 47 PLVNRPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADWGMLMESL 106 PL+N+P RV+ P+ IG+ L+ +WQ + +E+P YLVP+P L+ +TLV DW L +L Sbjct: 6 PLLNQPRVQRVLYPVLIGVVLVALWQWMVVAMELPSYLVPSPYLMMQTLVTDWAPLGNAL 65 Query: 107 LVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLIIIWVKD 166 LVTLKIT L+F LA + GV I+F+FVQS+ IE +LFPYA++LQVTPIVA+APLIIIWVK+ Sbjct: 66 LVTLKITVLSFALATVAGVLISFLFVQSKRIETALFPYAVLLQVTPIVAVAPLIIIWVKN 125 Query: 167 TTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYFF 226 AA+TVCA ++ALFPIISNTTLGLRS++P L + F+LN+ATRWQ L RLRIPSALPYFF Sbjct: 126 PVAAMTVCAALVALFPIISNTTLGLRSIDPDLQSYFKLNRATRWQQLVRLRIPSALPYFF 185 Query: 227 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITLTGILL 286 GGLRISSGLALIGAVVAEFVAGTGG+G+GLAYQILQAGFQLNIPR+FAALLLI+LTG+ L Sbjct: 186 GGLRISSGLALIGAVVAEFVAGTGGSGAGLAYQILQAGFQLNIPRMFAALLLISLTGVAL 245 Query: 287 FWLMSALSRAMLAGWHESEMA 307 F LM+ L++ L WH SE++ Sbjct: 246 FVLMAWLTKVALGSWHASELS 266 >ref|YP_046150.1| ABC transporter permease [Acinetobacter sp. ADP1] emb|CAG68328.1| putative permease protein (ABC superfamily, membrane) [Acinetobacter sp. ADP1] Length = 264 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 174/261 (66%), Positives = 212/261 (81%) Query: 47 PLVNRPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADWGMLMESL 106 PL+N P F RV APL++G+ LLL+WQI + VP YL+P P I LV+ G+L SL Sbjct: 4 PLMNHPKFRRVAAPLALGVTLLLIWQISLQQMNVPVYLIPKPTDIGHALVSQSGLLFGSL 63 Query: 107 LVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLIIIWVKD 166 VTLK+T LAF+ AV++G IAF+FVQSR IE PYAI+ QVTPIVAIAPL+IIW+++ Sbjct: 64 WVTLKVTLLAFICAVVIGTLIAFLFVQSRVIEACFMPYAILFQVTPIVAIAPLVIIWIQN 123 Query: 167 TTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYFF 226 TT AL VCA ++A+FPI++NTTLGLRSVN GLLNLF++NKA+RWQ L RLR+P+ALPYFF Sbjct: 124 TTLALVVCAMLVAIFPILTNTTLGLRSVNAGLLNLFQINKASRWQVLMRLRVPNALPYFF 183 Query: 227 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITLTGILL 286 GGLRISSGLALIGAVV+EFVAGTGGT +GLAYQILQAGFQL++P +FAAL LIT TG++L Sbjct: 184 GGLRISSGLALIGAVVSEFVAGTGGTSAGLAYQILQAGFQLDLPLMFAALFLITCTGLVL 243 Query: 287 FWLMSALSRAMLAGWHESEMA 307 F LMS LS+ L WHESE + Sbjct: 244 FILMSMLSQMFLNKWHESEQS 264 >ref|YP_002946631.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS21365.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 267 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 178/261 (68%), Positives = 221/261 (84%) Query: 47 PLVNRPGFWRVVAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADWGMLMESL 106 PL+++P RV+ PL IG+ L+ +WQ + +E+PPYLVP+P L+ +TLV DW L +L Sbjct: 5 PLLSQPRVQRVLYPLLIGVVLVALWQWMVVAMELPPYLVPSPFLMVQTLVTDWAPLGSAL 64 Query: 107 LVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLIIIWVKD 166 LVTLKIT L+F+LA + GV I+F+FVQS+ IE +LFPYA++LQVTPIVA+APLIIIWVK+ Sbjct: 65 LVTLKITLLSFLLATVAGVLISFLFVQSKRIETALFPYAVLLQVTPIVAVAPLIIIWVKN 124 Query: 167 TTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYFF 226 AA+TVCA ++ALFPIISNTTLGLRS++P L + F+LN+ATRWQ L RLRIPSALPYFF Sbjct: 125 PVAAMTVCAALVALFPIISNTTLGLRSIDPDLQSYFKLNRATRWQQLVRLRIPSALPYFF 184 Query: 227 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITLTGILL 286 GGLRISSGLALIGAVVAEFVAGTGG+G+GLAYQILQAGFQLNIPR+FAALLLI+LTG+ L Sbjct: 185 GGLRISSGLALIGAVVAEFVAGTGGSGAGLAYQILQAGFQLNIPRMFAALLLISLTGVAL 244 Query: 287 FWLMSALSRAMLAGWHESEMA 307 F LM+ L++ L WH SE++ Sbjct: 245 FVLMAWLTKLALGSWHASELS 265