BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0635.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum ...   246   7e-64
ref|YP_001100978.1| putative holliday junction resolvase [Hermin...   210   6e-53
ref|YP_004751457.1| putative Holliday junction resolvase [Collim...   209   1e-52
ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacteri...   209   1e-52
ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxaloba...   206   1e-51

>ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 128

 Score =  246 bits (629), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 123/128 (96%), Positives = 126/128 (98%)

Query: 12  LETILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGL 71
           ++TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLI EWQPARCVVGL
Sbjct: 1   MDTILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 60

Query: 72  PLHPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQ 131
           PLHPDGAEHEMSVRCRRFANQLHGRYG+EV LVDERYSSAVIQHQRGEQIDDQAAAIILQ
Sbjct: 61  PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 120

Query: 132 QYFDDAHS 139
           QYFDDAHS
Sbjct: 121 QYFDDAHS 128


>ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans]
 emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  210 bits (534), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 100/125 (80%), Positives = 110/125 (88%)

Query: 12  LETILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGL 71
           +ET+L FDFGLKRIGVAVGNT LKQAQPL +IS ATND KFAAIA L+ +WQPA C+VGL
Sbjct: 1   METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60

Query: 72  PLHPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQ 131
           P HPDGAEHEM+VRCRRFANQLHGR+ +   LVDERYSSAVI HQRG+ IDDQAAAIILQ
Sbjct: 61  PRHPDGAEHEMTVRCRRFANQLHGRFDVATVLVDERYSSAVISHQRGDLIDDQAAAIILQ 120

Query: 132 QYFDD 136
           QYFDD
Sbjct: 121 QYFDD 125


>ref|YP_004751457.1| putative Holliday junction resolvase [Collimonas fungivorans
           Ter331]
 gb|AEK60634.1| Putative Holliday junction resolvase [Collimonas fungivorans
           Ter331]
          Length = 136

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/123 (82%), Positives = 108/123 (87%)

Query: 14  TILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGLPL 73
           T+LAFDFGLKRIGVAVGNT LKQAQPL VIS ATNDGKFA I+ LI EWQP  CVVGLPL
Sbjct: 7   TVLAFDFGLKRIGVAVGNTLLKQAQPLQVISAATNDGKFAEISVLIKEWQPVLCVVGLPL 66

Query: 74  HPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQQY 133
           HPDGA HEMSVRC+RFANQLHGRY +   LVDERYSSAVI+ QRGE IDD+AAAIILQQY
Sbjct: 67  HPDGATHEMSVRCQRFANQLHGRYDVATVLVDERYSSAVIKQQRGEVIDDRAAAIILQQY 126

Query: 134 FDD 136
           FDD
Sbjct: 127 FDD 129


>ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
 gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille]
          Length = 131

 Score =  209 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/125 (80%), Positives = 109/125 (87%)

Query: 12  LETILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGL 71
           +ET+L FDFGLKRIGVAVGNT LKQAQPL +IS ATND KFAAIA L+ +WQPA C+VGL
Sbjct: 1   METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60

Query: 72  PLHPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQ 131
           P HPDG EHEM+VRCRRFANQLHGR+ +   LVDERYSSAVI HQRGE IDDQAAAIILQ
Sbjct: 61  PRHPDGEEHEMTVRCRRFANQLHGRFNVATVLVDERYSSAVISHQRGELIDDQAAAIILQ 120

Query: 132 QYFDD 136
           QYFDD
Sbjct: 121 QYFDD 125


>ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 135

 Score =  206 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/125 (77%), Positives = 110/125 (88%)

Query: 12  LETILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIAEWQPARCVVGL 71
           +ET+L FDFGLKRIGVAVGNT ++QAQ L +I  ATND KFAAIA L+A WQPARC+VG+
Sbjct: 1   METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60

Query: 72  PLHPDGAEHEMSVRCRRFANQLHGRYGLEVTLVDERYSSAVIQHQRGEQIDDQAAAIILQ 131
           P HPDGAEHEMSVRCRRFANQLHGRYGL   LVDERY+SAV+  QRGE+IDD+AAA+ILQ
Sbjct: 61  PFHPDGAEHEMSVRCRRFANQLHGRYGLPTVLVDERYTSAVLGQQRGERIDDRAAALILQ 120

Query: 132 QYFDD 136
           QYFDD
Sbjct: 121 QYFDD 125