BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0625.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspiril... 526 e-147 ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fu... 416 e-114 ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax ... 414 e-113 ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax ... 409 e-112 ref|YP_003279254.1| hypothetical protein CtCNB1_3212 [Comamonas ... 405 e-111 >ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspirillum seropedicae SmR1] emb|CAM34549.1| hypothetical protein [Herbaspirillum seropedicae] emb|CAM35233.1| conserved hypothetical protein [Herbaspirillum seropedicae] gb|ADJ61999.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 267/289 (92%), Positives = 277/289 (95%) Query: 1 MESQIIEIGLTEWQVEYPNQDWITALEAGKVLYFPQLAFQLMDSERKLLDPAVRAPKSRN 60 MESQIIEIGLTEWQ + P+Q+WITALEAGKVLYFP+L FQL++SER LLDPAVR PK RN Sbjct: 1 MESQIIEIGLTEWQADNPHQEWITALEAGKVLYFPRLGFQLLESERALLDPAVRDPKVRN 60 Query: 61 ISLDARGHIKGAAGGTEQQLALAAMVGRFREQALALVHSLLPKYRDALRVAPTSYRPMQV 120 ISLDARGHIKGAAG EQQLALAAMVGRFREQAL LVHSLLPKY DALRVAPTSYRPMQV Sbjct: 61 ISLDARGHIKGAAGDAEQQLALAAMVGRFREQALGLVHSLLPKYSDALRVAPTSYRPMQV 120 Query: 121 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNVNPDAVPRVWRVGEPFETVAQRFLP 180 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTN+NPD VPRVWRVGEPFETVA+RFLP Sbjct: 121 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNINPDGVPRVWRVGEPFETVARRFLP 180 Query: 181 RAKPYVRWQASVLKALHVTKSFRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW 240 RAKPYVRWQASVLKALHVTKS RSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW Sbjct: 181 RAKPYVRWQASVLKALHVTKSLRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW 240 Query: 241 ICFSDQASHAVMSGQYMMEQTLHLAPDQQYDPQSSPLAILTRLVGHPLV 289 ICFSDQASHAVMSGQYMMEQTLHLAP++QYDPQSSPLAILTRLVGHPLV Sbjct: 241 ICFSDQASHAVMSGQYMMEQTLHLAPERQYDPQSSPLAILTRLVGHPLV 289 >ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331] gb|AEK60661.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331] Length = 301 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 210/291 (72%), Positives = 234/291 (80%), Gaps = 3/291 (1%) Query: 1 MESQIIEIGLTEWQVEYPNQDWITALEAGKVLYFPQLAFQLMDSERKLLDPAVRAPKSRN 60 ME QI+EI +T+WQ+ PN WI+ALEAGKVLYFP L+F E++ L PA+R PKSRN Sbjct: 9 MEQQILEIDITDWQISTPNSAWISALEAGKVLYFPHLSFIFTADEQRFLTPAIRDPKSRN 68 Query: 61 ISLDARGHIKGAAGGTEQQLALAAMVGRFREQALALVHSLLPKYRDA---LRVAPTSYRP 117 ISLDA G +KGA G ALA M+GRFR QA L+HSLLP Y D+ LR+APTSYRP Sbjct: 69 ISLDANGKLKGALGDAADHAALANMIGRFRAQAQQLIHSLLPAYADSRSELRMAPTSYRP 128 Query: 118 MQVETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNVNPDAVPRVWRVGEPFETVAQR 177 MQVETR+QSWRADDRR+HVDAFPSRPNYGERILRVF NVNPD VPRVWRVGEPFE VAQR Sbjct: 129 MQVETRSQSWRADDRRLHVDAFPSRPNYGERILRVFANVNPDGVPRVWRVGEPFEDVAQR 188 Query: 178 FLPRAKPYVRWQASVLKALHVTKSFRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAG 237 FLPR K Y RWQA VL+ALHVTKS RSEYDHLMLQLHD MK D +YQ+D QVT PFAAG Sbjct: 189 FLPRVKAYSRWQAQVLQALHVTKSLRSEYDHLMLQLHDAMKSDPEYQKDGPQVTQPFAAG 248 Query: 238 SVWICFSDQASHAVMSGQYMMEQTLHLAPDQQYDPQSSPLAILTRLVGHPL 288 SVW+CFSDQ HAVM+GQYM+EQTLHL +QYDP +SPLAIL RL G L Sbjct: 249 SVWVCFSDQTPHAVMAGQYMLEQTLHLPAAKQYDPGASPLAILRRLTGRAL 299 >ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS] gb|ADU37494.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS] Length = 289 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 204/289 (70%), Positives = 233/289 (80%) Query: 1 MESQIIEIGLTEWQVEYPNQDWITALEAGKVLYFPQLAFQLMDSERKLLDPAVRAPKSRN 60 M +Q++E+ LT+W PN+ WI ALEAGKVLYFP+L F+L+ ER LL P++ +P RN Sbjct: 1 MGTQLVELDLTDWNAATPNEAWIAALEAGKVLYFPRLGFELLPEERSLLTPSLLSPDVRN 60 Query: 61 ISLDARGHIKGAAGGTEQQLALAAMVGRFREQALALVHSLLPKYRDALRVAPTSYRPMQV 120 ISLDA G +KGA G Q AAMVGRFR QA L+H LLP Y ALR+APTSYRP QV Sbjct: 61 ISLDANGKLKGAVGDEAVQRTAAAMVGRFRAQAQQLIHGLLPHYTPALRLAPTSYRPAQV 120 Query: 121 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNVNPDAVPRVWRVGEPFETVAQRFLP 180 ETR QSWRADDRR+HVDAFPSRPNYGERILRVFTNVNP+ PRVWRVGEPFE +A+RFLP Sbjct: 121 ETRVQSWRADDRRLHVDAFPSRPNYGERILRVFTNVNPEGAPRVWRVGEPFEDIARRFLP 180 Query: 181 RAKPYVRWQASVLKALHVTKSFRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW 240 RAKPYVRWQA +L+ALHVTKSFRSEYDHLMLQLHDGMK DM YQ+ + Q F GSVW Sbjct: 181 RAKPYVRWQAKLLQALHVTKSFRSEYDHLMLQLHDGMKSDMAYQETSPQEKAEFPPGSVW 240 Query: 241 ICFSDQASHAVMSGQYMMEQTLHLAPDQQYDPQSSPLAILTRLVGHPLV 289 +CFSDQ SHAVM+GQYM+EQTLHLA +QY+P SSPLAIL+RL G LV Sbjct: 241 VCFSDQTSHAVMAGQYMLEQTLHLAASKQYNPDSSPLAILSRLTGRNLV 289 >ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax paradoxus S110] gb|ACS19243.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 289 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 202/289 (69%), Positives = 234/289 (80%) Query: 1 MESQIIEIGLTEWQVEYPNQDWITALEAGKVLYFPQLAFQLMDSERKLLDPAVRAPKSRN 60 ME+Q++E+ L++W+ PN+ WI LEAGKVLYFP+L F+L+ ER LL P++ +P RN Sbjct: 1 METQLVELDLSDWRAATPNEAWIAQLEAGKVLYFPRLGFELLPEERSLLTPSLLSPDVRN 60 Query: 61 ISLDARGHIKGAAGGTEQQLALAAMVGRFREQALALVHSLLPKYRDALRVAPTSYRPMQV 120 ISLDA G +KGA G Q AAMVGRFR QA L+H LLP Y ALR+APTSYRP QV Sbjct: 61 ISLDANGKLKGAVGDEAVQRTAAAMVGRFRAQAQQLIHGLLPHYTPALRLAPTSYRPAQV 120 Query: 121 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNVNPDAVPRVWRVGEPFETVAQRFLP 180 ETR QSWRADDRR+HVDAFPSRPNYGERILRVFTNVNP+ PRVWRVGEPFE +A+RFLP Sbjct: 121 ETRVQSWRADDRRLHVDAFPSRPNYGERILRVFTNVNPEGAPRVWRVGEPFEDIARRFLP 180 Query: 181 RAKPYVRWQASVLKALHVTKSFRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW 240 RAKPYVRWQA +L+ALHVTKSFRSEYDHLMLQLHDGMK DM YQ+++ Q F GSVW Sbjct: 181 RAKPYVRWQARLLQALHVTKSFRSEYDHLMLQLHDGMKSDMAYQENSPQERAEFPPGSVW 240 Query: 241 ICFSDQASHAVMSGQYMMEQTLHLAPDQQYDPQSSPLAILTRLVGHPLV 289 +CFSDQ SHAVM+GQYM+EQTLHL +QY+P SSPLAIL+RL G LV Sbjct: 241 VCFSDQTSHAVMAGQYMLEQTLHLPASKQYNPDSSPLAILSRLTGRTLV 289 >ref|YP_003279254.1| hypothetical protein CtCNB1_3212 [Comamonas testosteroni CNB-2] gb|ACY33958.1| conserved hypothetical protein [Comamonas testosteroni CNB-2] Length = 294 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 201/289 (69%), Positives = 231/289 (79%) Query: 1 MESQIIEIGLTEWQVEYPNQDWITALEAGKVLYFPQLAFQLMDSERKLLDPAVRAPKSRN 60 MESQI++I T+W +W A+EAGKVLYFPQL+FQL + E+ LL P VR PK+RN Sbjct: 1 MESQIVKIDATDWSQVQGRDEWTAAVEAGKVLYFPQLSFQLTEQEKALLRPDVRDPKTRN 60 Query: 61 ISLDARGHIKGAAGGTEQQLALAAMVGRFREQALALVHSLLPKYRDALRVAPTSYRPMQV 120 ISL+ G IKG AG Q +A MVGRFREQA AL+ L P Y +R+APTSYRP QV Sbjct: 61 ISLNVDGSIKGVAGDEATQAQVAGMVGRFREQATALIAGLFPAYMPVVRMAPTSYRPSQV 120 Query: 121 ETRAQSWRADDRRMHVDAFPSRPNYGERILRVFTNVNPDAVPRVWRVGEPFETVAQRFLP 180 ETRAQSWRADD+RMHVDAFPSRPNYGERILRVFTNVNPD PRVWRVGEPF VA+RF+P Sbjct: 121 ETRAQSWRADDKRMHVDAFPSRPNYGERILRVFTNVNPDGQPRVWRVGEPFTDVAKRFVP 180 Query: 181 RAKPYVRWQASVLKALHVTKSFRSEYDHLMLQLHDGMKGDMQYQQDAQQVTMPFAAGSVW 240 RAKPY WQA L+ LHVTKS+RSEYDHLMLQLHDGMKGD YQ++A Q T+PFAAGS W Sbjct: 181 RAKPYSAWQAKALELLHVTKSYRSEYDHLMLQLHDGMKGDPDYQKNAPQETVPFAAGSTW 240 Query: 241 ICFSDQASHAVMSGQYMMEQTLHLAPDQQYDPQSSPLAILTRLVGHPLV 289 +CFSDQA HAVMSGQYM+EQTL L P +Y+P +SPL+IL+R+ GHPLV Sbjct: 241 VCFSDQAVHAVMSGQYMLEQTLFLPPGSEYNPAASPLSILSRMKGHPLV 289