BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0624.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid (KDO) trans... 618 e-175 gb|ADU90688.1| putative 3-deoxy-D-manno-octulosonic acid transfe... 493 e-137 ref|YP_004751485.1| 3-deoxy-D-manno-octulosonic-acid transferase... 485 e-135 ref|ZP_04579661.1| 3-deoxy-D-manno-octulosonic-acid transferase ... 473 e-131 ref|YP_001354632.1| 3-deoxy-D-manno-octulosonic-acid transferase... 455 e-126 >ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid (KDO) transferase [Herbaspirillum seropedicae SmR1] gb|ADJ62000.1| 3-deoxy-d-manno-octulosonic-acid (KDO) transferase protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 329/426 (77%), Positives = 360/426 (84%), Gaps = 3/426 (0%) Query: 1 MRLLYSLVWWLVLPLVLLRLWRRGRKEPGYRAHVGERLGFYSQEARLSDPQARFIWVHAV 60 MR LYS +WW +PLVLLRLWRRGR+EPGYRAHV ERLGFY RL DPQARFIWVHAV Sbjct: 1 MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYP---RLPDPQARFIWVHAV 57 Query: 61 SVGETRAAEPLIDALLQQYPQHSILLTCMTATGRETGTQVYGKHGARVVQSFLPYDTGWM 120 SVGETRAAEPL+DALL +YP ILLTCMTATGR TG QV+GKHGARVVQSFLPYDTGWM Sbjct: 58 SVGETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWM 117 Query: 121 CARFLRHFRPVLCVLMETEVWPNLIRQCRRHQVPVMLANARLSERSLRRGQRFAALLRPA 180 C+RFLRHFRP+ C+LMETEVWPNLIRQCRRH VPVMLANARLSERSLRRGQRFA+LLRPA Sbjct: 118 CSRFLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPA 177 Query: 181 AEAIDVVAAQSPADAERLRAFGARHVEVTGSLKFDVQPPAEMVERGLAWKRAIGERKILL 240 AEAIDVV AQS DA RL AFGARHVEVTGSLKFDVQPP ++VERG WKRA+GERK+LL Sbjct: 178 AEAIDVVGAQSDGDARRLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKRALGERKVLL 237 Query: 241 CASTREGEEALILDALARLGKTGWLTVIVPRHPQRFAEVAGMIQAQGLRLRRRDALGQGG 300 CASTREGEE LILDALA+LG+ WLTVIVPRHPQRF EVA +I+A+GLRLRRR L Q Sbjct: 238 CASTREGEEVLILDALAKLGRPDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQDF 297 Query: 301 DWDQVDVVLGDSMGEMFAYYALCDVAFIGGSLLPLGGQNLIEALALGKPVLVGEHTFNFL 360 + VDVVLGDSMGEMFAYYAL DV+FIGGSLLPLGGQNLIEALALGKPVL+GEHTFNFL Sbjct: 298 AVEDVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVLIGEHTFNFL 357 Query: 361 SITDQAIEAGAACRISSTEQLWDMTSALFADPDRIAAMTHAAHGFAGAHQGASHKTTELL 420 IT++A+ GAA R+ +L S L A+PDRI M AA FA HQGA+ ++ LL Sbjct: 358 RITEEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLL 417 Query: 421 APLLAR 426 APLL R Sbjct: 418 APLLER 423 >gb|ADU90688.1| putative 3-deoxy-D-manno-octulosonic acid transferase [Collimonas sp. MPS11E8] Length = 448 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 273/435 (62%), Positives = 317/435 (72%), Gaps = 15/435 (3%) Query: 1 MRLLYSLVWWLVLPLVLLRLWRRGRKEPGYRAHVGERLGFYSQEARLSDPQAR-FIWVHA 59 +RLLYS VWWL +P+VLLRLWRRGRKEPGYR HV ER+GFY A S AR FIWVHA Sbjct: 15 IRLLYSAVWWLAMPMVLLRLWRRGRKEPGYRQHVAERIGFYPPLA--SQFAARKFIWVHA 72 Query: 60 VSVGETRAAEPLIDALLQQYPQHSILLTCMTATGRETGTQVYGKHGARVVQSFLPYDTGW 119 VSVGETRAAEPLI ALL YP+H+I+LT MTATGRETG Q++G+ RV+QSFLPYDTGW Sbjct: 73 VSVGETRAAEPLIKALLDAYPEHAIVLTHMTATGRETGKQLFGQ-SPRVLQSFLPYDTGW 131 Query: 120 MCARFLRHFRPVLCVLMETEVWPNLIRQCRRHQVPVMLANARLSERSLRRGQRFAALLRP 179 M ARFLRHF P LCVLMETEVWPNLI QC R +VPV L NARLSERSLRRG+ FA L+ Sbjct: 132 MVARFLRHFSPCLCVLMETEVWPNLIVQCGRCRVPVALVNARLSERSLRRGKSFATLMTE 191 Query: 180 AAEAIDVVAAQSPADAERLRAFGARHVEVTGSLKFDVQPPAEMVERGLAWKRAIGERKIL 239 AA + V AQ+ ADA RLR G +V++TG+LKFDV P ++ G A + IG+R +L Sbjct: 192 AASGMSCVGAQTDADAGRLRQLGGSNVQITGNLKFDVTPAPGLLALGAALRTQIGQRSVL 251 Query: 240 LCASTREGEEALILDALA-RLGKTG--------WLTVIVPRHPQRFAEVAGMIQAQGLRL 290 LCASTREGEE LIL AL+ R+ G L VIVPRHPQRF EVA + A+GL Sbjct: 252 LCASTREGEEELILAALSKRMQDPGAASALPPDLLLVIVPRHPQRFDEVAALATAKGLSP 311 Query: 291 RRRDALGQGGDWDQVDVVLGDSMGEMFAYYALCDVAFIGGSLLPLGGQNLIEALALGKPV 350 RR +LGQ Q V++GDSMGEMFAYYA+CDVAFIGGSLLP+GGQNLIEA A+GKPV Sbjct: 312 LRRSSLGQQPVLAQAKVLVGDSMGEMFAYYAMCDVAFIGGSLLPMGGQNLIEAFAVGKPV 371 Query: 351 LVGEHTFNFLSITDQAIEAGAACRISSTEQLWDMTSALF-ADPDRIAAMTHAAHGFAGAH 409 L+G HTFNF IT+QAI AGAA R+S + D L +DP R HA FA H Sbjct: 372 LIGPHTFNFSDITEQAIAAGAAQRVSDVGHMLDAAFQLLQSDPQRQVMGQHAIQ-FAQQH 430 Query: 410 QGASHKTTELLAPLL 424 +GA+ +T LLAP + Sbjct: 431 RGATARTMMLLAPFI 445 >ref|YP_004751485.1| 3-deoxy-D-manno-octulosonic-acid transferase [Collimonas fungivorans Ter331] gb|AEK60662.1| 3-deoxy-D-manno-octulosonic-acid transferase [Collimonas fungivorans Ter331] Length = 440 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 261/428 (60%), Positives = 307/428 (71%), Gaps = 6/428 (1%) Query: 1 MRLLYSLVWWLVLPLVLLRLWRRGRKEPGYRAHVGERLGFYSQEARLSDPQARFIWVHAV 60 +RLLYS VWWL +PLVLLRLWRRG KEPGYR HV ER+GFY A S RF+WVHAV Sbjct: 15 IRLLYSAVWWLAMPLVLLRLWRRGSKEPGYRQHVAERIGFYPPIAP-SLASRRFLWVHAV 73 Query: 61 SVGETRAAEPLIDALLQQYPQHSILLTCMTATGRETGTQVYGKHGARVVQSFLPYDTGWM 120 SVGETRAAEPLI A+L+ YP+H+ILLT MTATGR TG ++GK RV+Q FLPYDTGWM Sbjct: 74 SVGETRAAEPLIAAMLEAYPEHAILLTHMTATGRATGQALFGK-SPRVLQCFLPYDTGWM 132 Query: 121 CARFLRHFRPVLCVLMETEVWPNLIRQCRRHQVPVMLANARLSERSLRRGQRFAALLRPA 180 RFLRHF P+LCVLMETEVWPNLI QC ++VPV L NARLSERSLRRG+RF+ L+ A Sbjct: 133 AGRFLRHFSPLLCVLMETEVWPNLIAQCGHYKVPVALVNARLSERSLRRGKRFSTLMTEA 192 Query: 181 AEAIDVVAAQSPADAERLRAFGARHVEVTGSLKFDVQPPAEMVERGLAWKRAIGERKILL 240 A + V AQ+ ADA RLR G +V+VTG+LKFDV P ++ G + IG R +LL Sbjct: 193 AGGMSCVGAQTEADAGRLRQLGGDNVQVTGNLKFDVTPAPALLAIGAVMRGQIGSRPVLL 252 Query: 241 CASTREGEEALILDALARLGK----TGWLTVIVPRHPQRFAEVAGMIQAQGLRLRRRDAL 296 CASTR+GEE LIL+AL++ + LT+IVPRHPQRF EVA M A+GL RR AL Sbjct: 253 CASTRDGEEELILEALSKRSQDTAYADLLTIIVPRHPQRFDEVAEMAAAKGLLPLRRSAL 312 Query: 297 GQGGDWDQVDVVLGDSMGEMFAYYALCDVAFIGGSLLPLGGQNLIEALALGKPVLVGEHT 356 G V V+LGDSMGEMFAYY CDVAFIGGSLLP+GGQNLIEA A+GKPVL+G HT Sbjct: 313 GDQVVPQNVKVLLGDSMGEMFAYYMACDVAFIGGSLLPMGGQNLIEAFAVGKPVLIGPHT 372 Query: 357 FNFLSITDQAIEAGAACRISSTEQLWDMTSALFADPDRIAAMTHAAHGFAGAHQGASHKT 416 FNF IT+QAI AGAA R++ + D L + M A FA H+GAS +T Sbjct: 373 FNFSDITEQAIAAGAAQRVNDVGMMLDTAQHLLRTDQQRQEMGKQALHFAQQHRGASART 432 Query: 417 TELLAPLL 424 +LAP + Sbjct: 433 MAMLAPFI 440 >ref|ZP_04579661.1| 3-deoxy-D-manno-octulosonic-acid transferase [Oxalobacter formigenes OXCC13] gb|EEO30634.1| 3-deoxy-D-manno-octulosonic-acid transferase [Oxalobacter formigenes OXCC13] Length = 423 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 242/429 (56%), Positives = 305/429 (71%), Gaps = 9/429 (2%) Query: 1 MRLLYSLVWWLVLPLVLLRLWRRGRKEPGYRAHVGERLGFYSQEARLSDPQARFIWVHAV 60 MR LYSL+WWL+LPL + RL+ RGRKEPGYR H+ ERLGF+ ++ P+ R IWVHAV Sbjct: 1 MRRLYSLIWWLILPLAIARLYIRGRKEPGYRQHIPERLGFFPP---VASPKQR-IWVHAV 56 Query: 61 SVGETRAAEPLIDALLQQYPQHSILLTCMTATGRETGTQVYGKHGARVVQSFLPYDTGWM 120 SVGETRAAEPL+ ALL +YP ILLT MT TGR TG ++ R++Q++LPYDT WM Sbjct: 57 SVGETRAAEPLVRALLSRYPDCDILLTHMTPTGRATGRSLFETE-KRLMQAYLPYDTNWM 115 Query: 121 CARFLRHFRPVLCVLMETEVWPNLIRQCRRHQVPVMLANARLSERSLRRGQRFAALLRPA 180 RF+RHF+P LC+L+ETE+WPNLI QC +H VP+ L NARLS RSL++G++ +++ A Sbjct: 116 MGRFIRHFQPSLCILLETEIWPNLISQCVKHHVPLALVNARLSARSLKKGKKLESIMNEA 175 Query: 181 AEAIDVVAAQSPADAERLRAFGARHVEVTGSLKFDVQPPAEMVERGLAWKRAIGERKILL 240 A+ VVAAQ+ DA+RL FGA ++ VTGS+KFD+ PP E VE+G K+ IG R +L+ Sbjct: 176 AQGFSVVAAQTRTDADRLSQFGAGNIAVTGSVKFDITPPDEAVEKGKLLKKCIGNRPVLM 235 Query: 241 CASTREGEEALILDALARLGKTGWLTVIVPRHPQRFAEVAGMIQAQGLRLRRRDALGQGG 300 CASTR+GEE LILDAL L K L ++VPRHPQRF+EVA IQA+ +R+ +R L Sbjct: 236 CASTRDGEENLILDALDHLDKRA-LLLLVPRHPQRFSEVADQIQARKIRMMKRSQLQNLS 294 Query: 301 D---WDQVDVVLGDSMGEMFAYYALCDVAFIGGSLLPLGGQNLIEALALGKPVLVGEHTF 357 D V ++LG+SMGEMF YYA CDVAFIGGSLL LGGQNLIEA ALGKPVL+G HTF Sbjct: 295 SDIIPDDVRILLGNSMGEMFMYYAACDVAFIGGSLLKLGGQNLIEASALGKPVLIGPHTF 354 Query: 358 NFLSITDQAIEAGAACRISSTEQLWDMTSALFADPDRIAAMTHAAHGFAGAHQGASHKTT 417 NF +IT AI AGAA RI + ++ LF+ + M A FA GA+ +T Sbjct: 355 NFEAITKDAISAGAAIRIQTASEMMTEADKLFSQDTSRSEMGIKAQAFAQNQHGATDRTM 414 Query: 418 ELLAPLLAR 426 LLAPLL + Sbjct: 415 ALLAPLLEK 423 >ref|YP_001354632.1| 3-deoxy-D-manno-octulosonic-acid transferase [Janthinobacterium sp. Marseille] gb|ABR88762.1| 3-deoxy-D-manno-octulosonic-acid transferase [Janthinobacterium sp. Marseille] Length = 422 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 246/424 (58%), Positives = 298/424 (70%), Gaps = 3/424 (0%) Query: 1 MRLLYSLVWWLVLPLVLLRLWRRGRKEPGYRAHVGERLGFYSQEARLSDPQARFIWVHAV 60 MRL+YSL WW LPLVLLRL+ RGRKE GYR H+ ERLGFY D +WVHAV Sbjct: 1 MRLIYSLAWWFALPLVLLRLFVRGRKEAGYRQHIAERLGFYGGVPY--DGFTPLLWVHAV 58 Query: 61 SVGETRAAEPLIDALLQQYPQHSILLTCMTATGRETGTQVYGKHGARVVQSFLPYDTGWM 120 SVGETRAA+PLIDALL YP H +LLT MT TGR TG ++GK RV+QS+LPYDTGWM Sbjct: 59 SVGETRAAQPLIDALLAAYPTHQLLLTHMTPTGRATGKDLFGKQ-PRVLQSYLPYDTGWM 117 Query: 121 CARFLRHFRPVLCVLMETEVWPNLIRQCRRHQVPVMLANARLSERSLRRGQRFAALLRPA 180 RFLR F+P +CVLMETEVWPN++ QC +++VPV L NARLSERSL + +F +L A Sbjct: 118 VGRFLRAFQPRICVLMETEVWPNVMAQCVKYEVPVALVNARLSERSLNKALKFPSLFVEA 177 Query: 181 AEAIDVVAAQSPADAERLRAFGARHVEVTGSLKFDVQPPAEMVERGLAWKRAIGERKILL 240 A A+ VAAQ+ +DA+R++ GA V VTGS+KFDV PPAEM++RG + +G RK+L+ Sbjct: 178 AAAMSCVAAQTESDAQRVKQLGAPAVHVTGSIKFDVTPPAEMLQRGALLRTQLGPRKVLV 237 Query: 241 CASTREGEEALILDALARLGKTGWLTVIVPRHPQRFAEVAGMIQAQGLRLRRRDALGQGG 300 CA+TR+GEEALILDA+ L + L +IVPRHPQRF +VA M+ A GL L RR G Sbjct: 238 CANTRDGEEALILDAMQGLNRPDILLMIVPRHPQRFDDVAQMVLAHGLALARRSGAGSAP 297 Query: 301 DWDQVDVVLGDSMGEMFAYYALCDVAFIGGSLLPLGGQNLIEALALGKPVLVGEHTFNFL 360 V V LGD+MGEMFAYY+ CD+AF+GGSLLPLGG NLIEA A+GKPVLVG HTFNF Sbjct: 298 LAPDVQVFLGDTMGEMFAYYSACDLAFVGGSLLPLGGHNLIEASAVGKPVLVGPHTFNFA 357 Query: 361 SITDQAIEAGAACRISSTEQLWDMTSALFADPDRIAAMTHAAHGFAGAHQGASHKTTELL 420 + AI AG A R+++ LW L D AM A FA H GA+ +T LL Sbjct: 358 DAAENAIAAGGAIRVANATDLWQQAIRLLDDDLARNAMGQKAQHFAQQHGGATRRTMSLL 417 Query: 421 APLL 424 PL+ Sbjct: 418 MPLI 421