BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0623.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751463.1| dTDP-glucose 4,6-dehydratase [Collimonas fun... 577 e-162 ref|ZP_08017212.1| dTDP-glucose 4,6-dehydratase [Lautropia mirab... 562 e-158 ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [Herminiimonas ... 559 e-157 ref|YP_004686653.1| dTDP-glucose 4,6-dehydratase RfbB [Cupriavid... 553 e-155 ref|YP_003278804.1| dTDP-glucose 4,6-dehydratase [Comamonas test... 551 e-155 >ref|YP_004751463.1| dTDP-glucose 4,6-dehydratase [Collimonas fungivorans Ter331] gb|AEK60640.1| dTDP-glucose 4,6-dehydratase [Collimonas fungivorans Ter331] Length = 359 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 267/353 (75%), Positives = 299/353 (84%) Query: 1 MIFVTGGAGFIGSNFVLEWLKSNDESVVNFDKLTYAGNLENLKSLGDDPRHIFVQGDICD 60 MIF+TGGAGFIGSNFVL+WL NDE V+NFDKLTYAGN+ NL S+ DPRHIFVQGDI D Sbjct: 1 MIFITGGAGFIGSNFVLDWLAQNDEPVINFDKLTYAGNMNNLASVRQDPRHIFVQGDIGD 60 Query: 61 QDQVQALFLQYRPRAILHFAAESHVDRSIHGPGEFIRTNINGTFSLLEAARAYWNGLDGQ 120 QV ALF QY+PRA++HFAAESHVDRSIHGP F+ TN+NGTF LLEA RAYW+ L Sbjct: 61 TAQVAALFAQYKPRAVVHFAAESHVDRSIHGPAAFVETNVNGTFGLLEATRAYWSALPDA 120 Query: 121 EKSDFRFLHVSTDEVYGSLSPEDPAFTETTPYAPNSPYSASKAASDHLVRSYHHTYGLPT 180 EK+ FRFLHVSTDEVYG+L P D F+ETT YAPNSPYSASKAASDHLVR+YHHTYGLPT Sbjct: 121 EKTAFRFLHVSTDEVYGTLGPADAPFSETTQYAPNSPYSASKAASDHLVRAYHHTYGLPT 180 Query: 181 LVTNCSNNYGPYHFPEKLIPLVISNALAGQSLPIYGDGMQVRDWLYVTDHCAAIRRVLEA 240 L TNCSNNYG YHFPEKLIPL+I+NA AG+ LPIYGDG QVRDWLYV+DHCAAIRRVL A Sbjct: 181 LTTNCSNNYGSYHFPEKLIPLIITNARAGKPLPIYGDGQQVRDWLYVSDHCAAIRRVLAA 240 Query: 241 GRPGQEYNVGGNNEKANLDVVKVLCGLLDELSPKASGKYFDQAVFVADRPGHDRRYAINA 300 G+PG+ YNVGG NEKANLDVV LC +LDEL PKA+G Y DQ +V DRPGHDRRYAI+A Sbjct: 241 GKPGEVYNVGGWNEKANLDVVHTLCDILDELDPKATGSYRDQITYVTDRPGHDRRYAIDA 300 Query: 301 AKIAGELGWTPAETFETGMRKTVEWYLANQDWVANVRSGEYRKWIEGNYHGRE 353 KI ELGW P ETF+TG+RKTV+WYLANQDWV NV+SG+Y KW+E NY R+ Sbjct: 301 GKIERELGWKPVETFDTGIRKTVQWYLANQDWVKNVQSGDYLKWVEKNYEQRQ 353 >ref|ZP_08017212.1| dTDP-glucose 4,6-dehydratase [Lautropia mirabilis ATCC 51599] gb|EFV95875.1| dTDP-glucose 4,6-dehydratase [Lautropia mirabilis ATCC 51599] Length = 389 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 259/353 (73%), Positives = 297/353 (84%) Query: 1 MIFVTGGAGFIGSNFVLEWLKSNDESVVNFDKLTYAGNLENLKSLGDDPRHIFVQGDICD 60 MI VTGGAGFIGSNFVL+WL +DE VVN DKLTYAGN +NL SL +P H F Q DICD Sbjct: 32 MILVTGGAGFIGSNFVLDWLAGSDEPVVNVDKLTYAGNRQNLASLEGNPAHHFEQVDICD 91 Query: 61 QDQVQALFLQYRPRAILHFAAESHVDRSIHGPGEFIRTNINGTFSLLEAARAYWNGLDGQ 120 ++ + AL +Y+PRA++HFAAESHVDRSIHGP F++TN+ GTF+LLEAAR YWN L G Sbjct: 92 REAIDALLAKYKPRAMVHFAAESHVDRSIHGPAAFVQTNMVGTFTLLEAARQYWNQLQGA 151 Query: 121 EKSDFRFLHVSTDEVYGSLSPEDPAFTETTPYAPNSPYSASKAASDHLVRSYHHTYGLPT 180 EK +FRFLHVSTDEVYGSL +DPAFTETTPY PNSPYSASKA SDHLVR+Y HTYG+P Sbjct: 152 EKENFRFLHVSTDEVYGSLEADDPAFTETTPYQPNSPYSASKAGSDHLVRAYFHTYGMPV 211 Query: 181 LVTNCSNNYGPYHFPEKLIPLVISNALAGQSLPIYGDGMQVRDWLYVTDHCAAIRRVLEA 240 L TNCSNNYGPYHFPEKLIPLVI+NALAG++LPIYGDG VRDWL+V DHC+AIRRVLEA Sbjct: 212 LTTNCSNNYGPYHFPEKLIPLVITNALAGKNLPIYGDGKNVRDWLFVKDHCSAIRRVLEA 271 Query: 241 GRPGQEYNVGGNNEKANLDVVKVLCGLLDELSPKASGKYFDQAVFVADRPGHDRRYAINA 300 G+PG+ YNVGG+NEK N+D+V+ +C LLDE+ P A+G Y FV DRPGHDRRYAI+A Sbjct: 272 GKPGETYNVGGHNEKTNIDIVRQICKLLDEMKPDAAGSYERLITFVKDRPGHDRRYAIDA 331 Query: 301 AKIAGELGWTPAETFETGMRKTVEWYLANQDWVANVRSGEYRKWIEGNYHGRE 353 AKI ELGWTPAETFETG+RKTV WYL NQDWVANV+SG YR+WIE NY R+ Sbjct: 332 AKIGRELGWTPAETFETGIRKTVRWYLDNQDWVANVQSGAYREWIEHNYQDRK 384 >ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [Herminiimonas arsenicoxydans] emb|CAL61331.1| dTDP-glucose 4,6 dehydratase [Herminiimonas arsenicoxydans] Length = 367 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 261/353 (73%), Positives = 291/353 (82%), Gaps = 1/353 (0%) Query: 1 MIFVTGGAGFIGSNFVLEWLKSNDESVVNFDKLTYAGNLENLKSLGDDPRHIFVQGDICD 60 MI VTGGAGFIGSNFVL+WL +DE VVN DKLTYAGN NL SL DD RHIFV DICD Sbjct: 1 MILVTGGAGFIGSNFVLDWLAQSDEPVVNVDKLTYAGNPNNLASLRDDTRHIFVHADICD 60 Query: 61 QDQVQALFLQYRPRAILHFAAESHVDRSIHGPGEFIRTNINGTFSLLEAARAYWNGLDGQ 120 D++Q L Y+P AI+HFAAESHVDRSIHGP EF+RTNINGTFSLLEAAR YW L Sbjct: 61 SDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQLTSA 120 Query: 121 EKSDFRFLHVSTDEVYGSLSPEDPAFTETTPYAPNSPYSASKAASDHLVRSYHHTYGLPT 180 EK FRFLHVSTDEVYG+L P+D F+ETT YAPNSPYSASKAASDHLVRSYHHTYGLPT Sbjct: 121 EKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTYGLPT 180 Query: 181 LVTNCSNNYGPYHFPEKLIPLVISNALAGQSLPIYGDGMQVRDWLYVTDHCAAIRRVLEA 240 L TNCSNNYGPYHFPEKLIPL+I+NALAG+ LPIYGDG Q+RDWLYV DHC AIRRVL+A Sbjct: 181 LTTNCSNNYGPYHFPEKLIPLIIANALAGKPLPIYGDGQQIRDWLYVGDHCTAIRRVLQA 240 Query: 241 GRPGQEYNVGGNNEKANLDVVKVLCGLLDELSPKASG-KYFDQAVFVADRPGHDRRYAIN 299 G+PG+ YN+GG NEKANLDVV LC +LD L P +G Y Q +VADRPGHDRRYAI+ Sbjct: 241 GKPGETYNIGGWNEKANLDVVNTLCDMLDALQPNGAGSSYRKQITYVADRPGHDRRYAID 300 Query: 300 AAKIAGELGWTPAETFETGMRKTVEWYLANQDWVANVRSGEYRKWIEGNYHGR 352 A KI ELGW PAETF++G+RKTV+WYL NQ WV +V+SG+Y KW+E NY R Sbjct: 301 ARKIERELGWKPAETFDSGIRKTVQWYLENQAWVRDVQSGDYMKWLEKNYQQR 353 >ref|YP_004686653.1| dTDP-glucose 4,6-dehydratase RfbB [Cupriavidus necator N-1] gb|AEI78172.1| dTDP-glucose 4,6-dehydratase RfbB [Cupriavidus necator N-1] Length = 354 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 260/350 (74%), Positives = 291/350 (83%), Gaps = 3/350 (0%) Query: 2 IFVTGGAGFIGSNFVLEWL--KSNDESVVNFDKLTYAGNLENLKSLGDDPRHIFVQGDIC 59 I VTGGAGFIG+NFVL WL KS D V+N DKLTYAGN + L S+ DDPRH+F Q DIC Sbjct: 4 ILVTGGAGFIGANFVLAWLGDKSAD-GVINVDKLTYAGNRKTLASVEDDPRHVFSQTDIC 62 Query: 60 DQDQVQALFLQYRPRAILHFAAESHVDRSIHGPGEFIRTNINGTFSLLEAARAYWNGLDG 119 D+D + LF Y+PRA++HFAAESHVDRSIHGPGEFI+TNI GTF+LLEAARAYW L+G Sbjct: 63 DRDALDKLFTTYKPRAVVHFAAESHVDRSIHGPGEFIQTNIVGTFTLLEAARAYWGSLEG 122 Query: 120 QEKSDFRFLHVSTDEVYGSLSPEDPAFTETTPYAPNSPYSASKAASDHLVRSYHHTYGLP 179 Q KSDFRFLHVSTDEV+GSLS DP F+ETTPYAPNSPYSASKAASDHLVR+YHHTYGLP Sbjct: 123 QAKSDFRFLHVSTDEVFGSLSETDPQFSETTPYAPNSPYSASKAASDHLVRAYHHTYGLP 182 Query: 180 TLVTNCSNNYGPYHFPEKLIPLVISNALAGQSLPIYGDGMQVRDWLYVTDHCAAIRRVLE 239 L TNCSNNYGPYHFPEKLIPL+I+NALAG+ LPIYGDG+ VRDWLYV DHC+AIR VL Sbjct: 183 VLTTNCSNNYGPYHFPEKLIPLIIANALAGKPLPIYGDGLNVRDWLYVRDHCSAIREVLA 242 Query: 240 AGRPGQEYNVGGNNEKANLDVVKVLCGLLDELSPKASGKYFDQAVFVADRPGHDRRYAIN 299 GR G+ YNVGG NEK NLDVV LC LLD+LS KA+G Y DQ FV DRPGHDRRYAI+ Sbjct: 243 KGRLGETYNVGGWNEKTNLDVVHTLCDLLDDLSSKATGSYRDQITFVKDRPGHDRRYAID 302 Query: 300 AAKIAGELGWTPAETFETGMRKTVEWYLANQDWVANVRSGEYRKWIEGNY 349 A K+ ELGW PAETFE+G+RKTV+WYL NQ WV +V SGEYR W+ Y Sbjct: 303 ARKLERELGWKPAETFESGLRKTVQWYLDNQAWVQDVMSGEYRNWVTKQY 352 >ref|YP_003278804.1| dTDP-glucose 4,6-dehydratase [Comamonas testosteroni CNB-2] gb|ACY33508.1| dTDP-glucose 4,6-dehydratase [Comamonas testosteroni CNB-2] Length = 356 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 259/352 (73%), Positives = 296/352 (84%), Gaps = 1/352 (0%) Query: 1 MIFVTGGAGFIGSNFVLEWLKSNDESVVNFDKLTYAGNLENLKSLGDDPRHIFVQGDICD 60 MIFVTGGAGFIG+NFVL+WL +E VVN DKLTYAGNLENL SL D RH+FVQ DI D Sbjct: 1 MIFVTGGAGFIGANFVLDWLAHVNEPVVNIDKLTYAGNLENLASLKGDARHVFVQADIGD 60 Query: 61 QDQVQALFLQYRPRAILHFAAESHVDRSIHGPGEFIRTNINGTFSLLEAARAYWNGLDGQ 120 Q+ L Q++PRA+++FAAESHVDRSIHGP +FI+TN+ GTF LLEA RAYWNGL+G+ Sbjct: 61 SAQLAQLLAQHQPRAVVNFAAESHVDRSIHGPEDFIQTNVVGTFRLLEAVRAYWNGLEGE 120 Query: 121 EKSDFRFLHVSTDEVYGSLSPEDPAFTETTPYAPNSPYSASKAASDHLVRSYHHTYGLPT 180 KS FRFLHVSTDEVYG+L+P DPAFTE Y PNSPYSASKAASDHLVR++HHTYGLP Sbjct: 121 AKSGFRFLHVSTDEVYGTLAPTDPAFTEEHNYEPNSPYSASKAASDHLVRAWHHTYGLPV 180 Query: 181 LVTNCSNNYGPYHFPEKLIPLVISNALAGQSLPIYGDGMQVRDWLYVTDHCAAIRRVLEA 240 L TNCSNNYGP HFPEKLIPLVI NALAG+ LPIYGDGMQVRDWLYV DHC+AIRRVLEA Sbjct: 181 LTTNCSNNYGPLHFPEKLIPLVIVNALAGKPLPIYGDGMQVRDWLYVRDHCSAIRRVLEA 240 Query: 241 GRPGQEYNVGGNNEKANLDVVKVLCGLLDELSPKASGK-YFDQAVFVADRPGHDRRYAIN 299 G+ G+ YNVGG NEKAN+D+VK +C LLDEL P+A GK Y +Q +V DRPGHDRRYAI+ Sbjct: 241 GQLGETYNVGGWNEKANIDIVKTVCSLLDELRPRADGKAYAEQITYVTDRPGHDRRYAID 300 Query: 300 AAKIAGELGWTPAETFETGMRKTVEWYLANQDWVANVRSGEYRKWIEGNYHG 351 A K+ ELGW PAETFETG+RKTV+WYLAN +WVANV+SG YR W++ Y G Sbjct: 301 ARKLERELGWKPAETFETGIRKTVQWYLANPEWVANVQSGAYRDWVQKQYTG 352