BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0612.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_262554.1| GtrA family protein [Pseudomonas fluorescens Pf...    86   2e-15
ref|ZP_07775917.1| GtrA family protein [Pseudomonas fluorescens ...    79   2e-13
ref|YP_004355018.1| hypothetical protein PSEBR_a3668 [Pseudomona...    67   8e-10

>ref|YP_262554.1| GtrA family protein [Pseudomonas fluorescens Pf-5]
 gb|AAY94696.1| GtrA family protein [Pseudomonas fluorescens Pf-5]
          Length = 137

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 5   LVRYLIVAVLAYVIDMGGYYVLLK-MGVAPIWANVAVKILAAICGFFMHRRFTYQIKEAD 63
            VRYL++ VLAY +DMGG+ +L    GV P+ ANV  K+LA +  F  HR FT+ + E  
Sbjct: 3   FVRYLVIQVLAYGLDMGGFVLLFSHFGVDPLLANVICKLLAGVFAFIAHRSFTFGVVETA 62

Query: 64  GQMAHATKYFGLALLYTPISSVVLYLLMLVIPHPVYAKAIADVLLFIVTFWVTSSFTFTR 123
           G++  A +YF L  L  P+S++VL  ++ +IP  + AK +ADV+   + + ++  + F  
Sbjct: 63  GRLQQAVRYFALLALNIPLSALVLSGMLWLIPMAIAAKFVADVICVFLNYGLSKRYVFQG 122

Query: 124 KKSGAAAAV 132
           + +     V
Sbjct: 123 ESASQTKVV 131


>ref|ZP_07775917.1| GtrA family protein [Pseudomonas fluorescens WH6]
 gb|EFQ62887.1| GtrA family protein [Pseudomonas fluorescens WH6]
          Length = 135

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 4   TLVRYLIVAVLAYVIDMGGYYVLLKMGV-APIWANVAVKILAAICGFFMHRRFTYQIKEA 62
           T VRY  + ++AY +DMG + +L+ +    P+ AN+  K++A +  FF+HR FT+Q   A
Sbjct: 2   TFVRYGTIQLMAYALDMGTFLLLMTLSQDHPVLANITGKMVAGVFAFFLHRHFTFQSTHA 61

Query: 63  DGQMAHATKYFGLALLYTPISSVVLYLLMLVIPHPVYAKAIADVLLFIVTFWVTSSFTF 121
            G+ A A +YF L  L  P++S +  L +  I  P   K I+DV+   +T+W++  F F
Sbjct: 62  SGK-AQAVRYFSLLALNIPVASALFSLGLYFINSPAPVKLISDVICVALTYWISKLFVF 119


>ref|YP_004355018.1| hypothetical protein PSEBR_a3668 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA70014.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 135

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 4   TLVRYLIVAVLAYVIDMGGYYVLLKM-GVAPIWANVAVKILAAICGFFMHRRFTYQIKEA 62
           T +RY  + ++AY +DMG + +L+ +    P+ AN+A K +A +  FF+HR FT+Q    
Sbjct: 2   TFIRYGAIQLVAYALDMGTFLLLMALFNDQPVLANIAGKGVAGVFAFFLHRHFTFQSTGG 61

Query: 63  DGQMAHATKYFGLALLYTPISSVVLYLLMLVIPHPVYAKAIADVLLFIVTFWVTSSFTF 121
             ++  A +YF L  +  P++S +  + +  +  P   K ++DV+   +T+W++  F F
Sbjct: 62  SSKV-QAVRYFSLLAINIPLASALFSVGLYFVNSPAPVKFVSDVVCVALTYWISKLFVF 119