BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0610.p         (263 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01978986.1| GlcNAc-PI de-N-acetylase family [Vibrio chole...   106   4e-21
gb|ABI85337.1| hypothetical protein [Vibrio cholerae]                  80   3e-13

>ref|ZP_01978986.1| GlcNAc-PI de-N-acetylase family [Vibrio cholerae MZO-2]
 gb|EDM54075.1| GlcNAc-PI de-N-acetylase family [Vibrio cholerae MZO-2]
          Length = 244

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 16/234 (6%)

Query: 7   LFLFAHQDDEFGVFAEIARLLEAGDRVSVVYLTSGALDGGPRPDRNAESLDVLGRLGVAA 66
           ++L AHQDDEF     I + +   + + V++LT+G   G     RN ESL  L  LGV A
Sbjct: 3   IYLLAHQDDEFFCLPYIRKQILNSEPILVIFLTNGCFGGVTSEQRNRESLKTLTDLGVDA 62

Query: 67  SSVHFIGEKLGVPDSKLVEHMPAVLAELAA--LCHRIGQPELLYLLAWEGGHQDHDAAHL 124
            SV F+GE+L + D KL E +  V+ +L    +  +I +   +    +EGGHQDHD+   
Sbjct: 63  RSVIFLGEQLKIDDGKLHESVGKVITKLENEFVTTKISK---VIFPCFEGGHQDHDSISY 119

Query: 125 IGLALAKSSHCLPQTRQFTLYTGAGLSGPWFKLFAPLAANGEVMARRMS---WTERLRFM 181
           I +A ++  +   +  QF+LY    +  P F+++        +  +R+S   +   +  +
Sbjct: 120 I-VAYSRVFNGAKRL-QFSLYNAYEIINPLFRVYK------TIRHQRLSDDGFYYNISDL 171

Query: 182 RYCFLYPSQAKTWVGLFPFLFLHYVVRGTQLLQPCSLARIHEAAHDGPPLYERR 235
           +Y   Y SQ K+++GL PF+ + ++VR    L       I +  H G  LYERR
Sbjct: 172 KYILNYKSQKKSFLGLGPFILVRFLVRRYINLVNFESYYIDKRPHQGVLLYERR 225


>gb|ABI85337.1| hypothetical protein [Vibrio cholerae]
          Length = 178

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 16/182 (8%)

Query: 33  VSVVYLTSGALDGGPRPDRNAESLDVLGRLGVAASSVHFIGEKLGVPDSKLVEHMPAVLA 92
           + V++LT+G   G     RN ESL  L  LGV A SV F+GE+L + D KL E +  V+ 
Sbjct: 5   ILVIFLTNGCFGGVTSEQRNRESLKTLTDLGVDARSVIFLGEQLKIDDGKLHESVGKVIT 64

Query: 93  ELAA--LCHRIGQPELLYLLAWEGGHQDHDAAHLIGLALAKSSHCLPQTRQFTLYTGAGL 150
           +L    +  +I +   +    +EGGHQDHD+   I +A ++  +   +  QF+LY    +
Sbjct: 65  KLENEFVTTKISK---VIFPCFEGGHQDHDSISYI-VAYSRVFNGAKRL-QFSLYNAYEI 119

Query: 151 SGPWFKLFAPLAANGEVMARRMS---WTERLRFMRYCFLYPSQAKTWVGLFPFLFLHYVV 207
             P F+++        +  +R+S   +   +  ++Y   Y SQ K+++GL PF++L ++ 
Sbjct: 120 INPLFRVYK------TIRHQRLSDDGFYYNISDLKYILNYKSQKKSFLGLGPFIWLGFLF 173

Query: 208 RG 209
            G
Sbjct: 174 VG 175