BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0609.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_262553.1| hypothetical protein PFL_5485 [Pseudomonas fluo... 295 9e-78 ref|ZP_07775916.1| hypothetical protein PFWH6_3331 [Pseudomonas ... 260 3e-67 ref|YP_004355019.1| hypothetical protein PSEBR_a3669 [Pseudomona... 243 7e-62 ref|ZP_06943625.1| NAD dependent epimerase/dehydratase family [V... 147 3e-33 ref|YP_002279512.1| NAD-dependent epimerase/dehydratase [Rhizobi... 118 2e-24 >ref|YP_262553.1| hypothetical protein PFL_5485 [Pseudomonas fluorescens Pf-5] gb|AAY94695.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 421 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 253/421 (60%), Gaps = 12/421 (2%) Query: 1 MKIAITGATGYIGRQLAALALHQGHHPLLLTRTAPAADAGAWLRYDLFDTDALTLPGDVQ 60 M+IAITGATGYIGR+L A GH L L+R A W +DL D L+LP D+ Sbjct: 1 MRIAITGATGYIGRRLVRAARLAGHEILALSRRPMAEPGVTWQAFDLADNLPLSLPEDIA 60 Query: 61 AVVHLAFNPRVATEAD---GDAEMVAALRLLDAAAAVGARFVFVSSQTAREDAPTAYGRT 117 V HLA V T+ D E AA RL++AAA VGA VFVSSQ A DAPTAYGR Sbjct: 61 VVFHLA----VKTQHDFGESSVEQDAAQRLIEAAAVVGAGVVFVSSQAACADAPTAYGRI 116 Query: 118 KWRIEQLVLQRGGSVVRPGQVYGGAAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHVDDL 177 KW+IE L GG VVRPGQVYGGA +GLFGLL LV RLP+LPAF+P P +QPVHVDDL Sbjct: 117 KWQIEGKTLAAGGWVVRPGQVYGGAELGLFGLLCTLVRRLPVLPAFIPTPYVQPVHVDDL 176 Query: 178 ALALLRI-AQLPDATPEVHLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLAVR 236 LL AQ P V IA ++ + FT FL+AIA + +PVPT L+R+ V+ Sbjct: 177 VDVLLACPAQAPST---VLCIAATEGVGFTEFLQAIARGRTARRPVSIPVPTLLIRILVK 233 Query: 237 LLGAERSNRLGLSRLDSLFALPVMDTRGSLALLGLQLRSLESGMQPAAPG-DQLAAEAAA 295 LLGA S+RLGL RL SLFAL +MDT L + + LR L +GM + G +L E Sbjct: 234 LLGARLSSRLGLDRLLSLFALKLMDTAADLQRVSVALRPLGAGMTRSGRGRRELLVEGRV 293 Query: 296 MLCYVLNRRPDSDLVERYIAAIGRFREGRALGLPGFALRHPALLALLDDRAFLASERGQE 355 L YVL RP LV RY AI + GRAL LP R PALLALLD + +E Sbjct: 294 FLTYVLRVRPAGALVRRYARAIEALKSGRALPLPELMQRLPALLALLDGAGGIDDAFRRE 353 Query: 356 LAWRLDAATLLAEATQAGAERFIGIRQPAGMLRYGLGLACAVASEVFWRIARPVSMPLFL 415 LAWRL+AA ++AEA+ GA RF+G+ +P G R L + AV+ E RI + + P Sbjct: 354 LAWRLEAAMMVAEASPQGAGRFLGLDRPGGWWRGALRIFWAVSGETIRRIGQVILRPFLS 413 Query: 416 R 416 R Sbjct: 414 R 414 >ref|ZP_07775916.1| hypothetical protein PFWH6_3331 [Pseudomonas fluorescens WH6] gb|EFQ62886.1| hypothetical protein PFWH6_3331 [Pseudomonas fluorescens WH6] Length = 427 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 184/418 (44%), Positives = 237/418 (56%), Gaps = 4/418 (0%) Query: 1 MKIAITGATGYIGRQLAALALHQGHHPLLLTRTAPAADAGAWLRYDLFDTDALTLPGDVQ 60 MK+ ITGATGYIG++L+ALA GH + TR P A AWL YDL A P D Q Sbjct: 1 MKLLITGATGYIGQRLSALAAVNGHEVICATRQ-PCPAAYAWLPYDL-GGPAPEWPADTQ 58 Query: 61 AVVHLAFNPRVATEADGDAEMVAALRLLDAAAAVGARFVFVSSQTAREDAPTAYGRTKWR 120 A +HLA + + E+ AA L+ AA GARFVF+SSQTA+ AP YGRTKWR Sbjct: 59 AFIHLAADTSTGAHTGAENEIQAAQALIRAARQGGARFVFISSQTAQATAPGVYGRTKWR 118 Query: 121 IEQLVLQRGGSVVRPGQVYGGAAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHVDDLALA 180 IEQ VL GG V+RPGQVYGG GLFGLL LV R P +P +PAP +QP+HVDDLA + Sbjct: 119 IEQHVLAAGGIVIRPGQVYGGPERGLFGLLSGLVRRSPFIPVLMPAPGVQPIHVDDLAAS 178 Query: 181 LLRIAQLPDATPEVHLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLAVRLLGA 240 +L + + D EV + + ++ FL AIA VR R VP+P L+RL LG+ Sbjct: 179 ILAVVEHDDLGGEVLCLGAIEPIAVDRFLGAIAVHRVRAMRLPVPLPVPLLRLLRVSLGS 238 Query: 241 ERSNRLGLSRLDSLFALPVMDTRGSLALLGLQLRSLESGMQPAAPGDQ--LAAEAAAMLC 298 S + GL R+ SL LP MD++GSL LG++LR L GM + G + L EA +L Sbjct: 239 SLSTKSGLERIFSLLQLPPMDSKGSLQKLGIRLRPLAHGMHRSGRGQRRALLQEATMLLS 298 Query: 299 YVLNRRPDSDLVERYIAAIGRFREGRALGLPGFALRHPALLALLDDRAFLASERGQELAW 358 Y+L R P LV RY A+ + A+ + P LLALLD+ L + GQ LAW Sbjct: 299 YLLKRPPQRSLVSRYARALEQAGSSGAILHSRWLKDWPILLALLDNPGVLHTPDGQALAW 358 Query: 359 RLDAATLLAEATQAGAERFIGIRQPAGMLRYGLGLACAVASEVFWRIARPVSMPLFLR 416 RL A +AEA+ GA+ F+G P ++ + L + W +A PL R Sbjct: 359 RLQVALAIAEASPQGAKVFLGNPPPRSLVTALIALGLTSLKALVWTLAALACRPLARR 416 >ref|YP_004355019.1| hypothetical protein PSEBR_a3669 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70015.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 365 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 159/363 (43%), Positives = 210/363 (57%), Gaps = 6/363 (1%) Query: 65 LAFNPRVATEADGDAEMVAALRLLDAAAAVGARFVFVSSQTAREDAPTAYGRTKWRIEQL 124 +A + + +AD D E+ AA L+ A ARF+F+SSQTA AP YGRTKWRIEQ Sbjct: 1 MAADTSTSADADADDEIKAAQALIRCAQQGSARFIFISSQTAEATAPGVYGRTKWRIEQH 60 Query: 125 VLQRGGSVVRPGQVYGGAAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHVDDLALALLRI 184 VL GGSV+RPGQVYGG GLFGLL LV R P +P +PAP +QP+HVDDLA ++L + Sbjct: 61 VLAAGGSVIRPGQVYGGPERGLFGLLSGLVRRSPFIPILMPAPGVQPIHVDDLAASILAV 120 Query: 185 AQLPDATPEVHLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLAVRLLGAERSN 244 + D E+ + Q ++F FL +IAA VR R VP+P AL+RL LG S Sbjct: 121 VERDDLHAEILNLGAVQPIAFGRFLMSIAAHRVRAARLPVPLPVALLRLLRLSLGQSLSA 180 Query: 245 RLGLSRLDSLFALPVMDTRGSLALLGLQLRSLESGMQPAAPGDQ--LAAEAAAMLCYVLN 302 +LGL R+ SL LP MD+ SL LG++LR L GM + G + L EA +L Y+L Sbjct: 181 KLGLERIFSLIHLPPMDSERSLQKLGIRLRPLAHGMHRSGHGQRRGLLQEATVLLHYLLK 240 Query: 303 RRPDSDLVERYIAAIGRFREGRALGLPGFALRHPALLALLDDRAFLASERGQELAWRLDA 362 R P LV RY A+ R + R++ +R P LALLD+ L GQELAWRL Sbjct: 241 RPPQKSLVSRYARALERAGKTRSIIHSRLLMRWPIFLALLDNPGVLHKPDGQELAWRLQI 300 Query: 363 ATLLAEATQAGAERFIGIRQPAGMLRYGLGLACAVASEVFWRIA----RPVSMPLFLRDA 418 A +AEA+ GA+ F+G +QP ++ + L + W+IA RP + L L Sbjct: 301 ALGIAEASPQGAQVFLGTQQPRSLIATLVALGLTSVKALAWKIAALLGRPFARQLLLGSE 360 Query: 419 INR 421 +R Sbjct: 361 AHR 363 >ref|ZP_06943625.1| NAD dependent epimerase/dehydratase family [Vibrio cholerae RC385] gb|EFH72949.1| NAD dependent epimerase/dehydratase family [Vibrio cholerae RC385] Length = 420 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 121/398 (30%), Positives = 180/398 (45%), Gaps = 39/398 (9%) Query: 1 MKIAITGATGYIGRQLAALALHQGHHPLLLTRTAPAADAG--AWLRYDLFDTDALTLPGD 58 MK+ ITG+TGYIG+ L G + +R+ + L+Y L D LP D Sbjct: 1 MKVLITGSTGYIGKSLINALTKDGVDVIACSRSGEQSSQRRITSLKYSLADYQNFHLPKD 60 Query: 59 VQAVVHLAFNPRVATEAD--GDAEMVAALRLLDAAAAVGARFVFVSSQTAREDAPTAYGR 116 V AVVHLA ++ EAD + E+ AA +L + ++GA+F+F SS +A++ T Y R Sbjct: 61 VDAVVHLAAITKLDKEADLSAETEISAAKKLYEDTISMGAKFIFFSSLSAQKTVQTKYAR 120 Query: 117 TKWRIEQ-LVLQRGGSVVRPGQVYGGAAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHVD 175 K IE L Q V+R G VYGG G + +L+ L ++LP++P F P P IQ ++ Sbjct: 121 VKLEIENYLSSQPNAYVLRLGLVYGGEPQGFYQMLLGLSEKLPLVPIFKPIPKIQTSYIG 180 Query: 176 DLALALLRIAQLPDATPEVHLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLAV 235 + ++ I L D + L + ++F FL A + K+ F +P + L Sbjct: 181 QVCASVKTI--LDDNATKHKLNIITNTMAFDDFLSQTAFFKLNKSLVFFYIPKPISYLLN 238 Query: 236 RLLGAERSNRLGLSRLDSLFALPVMDTRGSLAL-LGLQLRSLESGMQPAAPGDQ------ 288 ++ GL R LAL G QL ES + P Sbjct: 239 EVMKHSSLKPFGLDRY--------------LALSFGYQL--FESDLCQDEPIPSICRSCN 282 Query: 289 -----LAAEAAAMLCYVLNRRPDSDLVERYIAAIGRFREGRALGLPGFALRHPALLALLD 343 L EA A+L YV + P + L++RY+ I +G L L + P L+ D Sbjct: 283 VNRYLLIREAKAVLSYVYGQLPSASLIKRYVHVIETLHDGVPLYLKERLIFSPNLIKYYD 342 Query: 344 DRAFLASERGQELAWRLDAATLLAEATQAGAERFIGIR 381 + R EL R+ AA++L E T G F+ R Sbjct: 343 N----TLSRHPELFDRIVAASILIETTPEGFNEFVNCR 376 >ref|YP_002279512.1| NAD-dependent epimerase/dehydratase [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58772.1| NAD-dependent epimerase/dehydratase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 405 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 186/387 (48%), Gaps = 25/387 (6%) Query: 2 KIAITGATGYIGRQLAALALHQGHHPLLLTRTAPAADAGAWLRYDLFDTDALTLPGDVQA 61 ++ ITG+TGYIG +L A+A +G + L R + A ++ + D A + Sbjct: 4 RLIITGSTGYIGARLVAMAHERGFEVVELGRRSGA-------KWRIGDEPAASDLEGAVG 56 Query: 62 VVHLAFNPRVATEA--DGDAEMVAALRLLDAAAAVGA-RFVFVSSQTAREDAPTAYGRTK 118 +VHLA + +A + + + + L DAA A G RFVF SS ++R +A YGRTK Sbjct: 57 IVHLAHSWATEPQAAEEDNINIPGTVTLADAARAAGVPRFVFSSSTSSRREALNVYGRTK 116 Query: 119 WRIEQLVLQRGGS----VVRPGQVYGGAAMGLFGLLVNLVDRLPMLPAFLPAPLIQPVHV 174 +RIEQ + + V R G VYGG ++GL+ L P+LP + +QP+H+ Sbjct: 117 FRIEQHLAASSAAPIVRVARIGLVYGGPRTAMYGLMAKLAALSPILPMIGLSREVQPIHL 176 Query: 175 DDLALALLRIAQLPDATPEVHLIAQSQALSFTTFLRAIAASHVRKTRFFVPVPTALVRLA 234 D++A LL +A + P+ ++AQ + +SF +LR + S + F+PVP A LA Sbjct: 177 DEVAEGLLALATQENQPPQTFVLAQEKPISFAAWLRMLRRSQGKGNLHFIPVPLAAALLA 236 Query: 235 VRLLG-AERSNRLGLSRLDSLFALPVMDTRGSLALLGLQLRS---LESGMQPAAPGDQLA 290 + + R+ L M++ SL LL L L +G D+ Sbjct: 237 CHMTKLVPLIPTVDPERVLGLAGAAPMESGESLRLLKLTLADPMVTLAGEFGQTGEDRSL 296 Query: 291 AEAAAMLCYVLNRRPDSDLVERYIAAIGRFREGRA-LGLPGFALRHPALLALLDDRAFLA 349 +EA A+L Y L P ++R G REG + LGL +RHP LLAL + A Sbjct: 297 SEAQALLQY-LGIAPTEMQLQRLCE--GLRREGLSPLGLSATVIRHPRLLALFEPP---A 350 Query: 350 SERGQELAWRLDAATLLAEATQAGAER 376 S LA L A L +E + +R Sbjct: 351 SRTQHRLARALYLADLASEPERHADQR 377