BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0608.p (498 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004355020.1| hypothetical protein PSEBR_a3670 [Pseudomona... 525 e-147 ref|ZP_07775915.1| hypothetical protein PFWH6_3330 [Pseudomonas ... 517 e-144 ref|YP_262552.1| hypothetical protein PFL_5484 [Pseudomonas fluo... 477 e-132 ref|ZP_06943626.1| conserved hypothetical protein [Vibrio choler... 381 e-103 ref|YP_002279511.1| FAD dependent oxidoreductase [Rhizobium legu... 204 4e-50 >ref|YP_004355020.1| hypothetical protein PSEBR_a3670 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70016.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 528 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 259/479 (54%), Positives = 332/479 (69%), Gaps = 6/479 (1%) Query: 13 PTRSFLEERATDPRQWEWMVGERFHALGMREAISPKLRVPTHAHVFADFAQVNRVDSQGF 72 PTR FL RA D QW+WM+GE FHAL +A+SPKL+ PTHAHVF F+ NR+++ F Sbjct: 45 PTRPFLSARANDEHQWKWMIGEHFHALNQLDAVSPKLKTPTHAHVFEGFSARNRIETDNF 104 Query: 73 IALGSLAPGGLSNAWGCGVAQLSPQELAAFPCPSDAMHDSYRTVVERIGVSRSQQDELTD 132 I +GSLA GGLSNAWGCGVA L + A P M SY TV RIG+S D+L+ Sbjct: 105 IGIGSLATGGLSNAWGCGVATLGASDFAGLPIDCSEMQASYETVSRRIGISGRIDDDLSS 164 Query: 133 YFGMQGEAQPEIALDKLHTALDQKYRRHGADLLQQGFRLGRFPVAVLSQDRGARKGCNRS 192 YFG+ +QP + LD LH L +Y R + + GFRLGR VAVLSQ RK C+ S Sbjct: 165 YFGLDEWSQPPLPLDTLHQRLLDQYTRRRSAFPELGFRLGRSRVAVLSQPLDERKACDLS 224 Query: 193 GNCLFGCERRSLYSASEDLETLRQFPNFRHAR-LQVESLRQDAGQGWQVYGEDPQDRQRK 251 GNCL+GC+ ++LYSAS++L+ L+Q+P F+H + VE L++ G W + R + Sbjct: 225 GNCLWGCQNQALYSASQELQKLKQYPGFQHVQDFLVEDLQKLDG-AWAI----TDHRSAR 279 Query: 252 TFSARQVHLAAGTVATTRLALSALKHEAPVRLLSCPTAAFILWMPSFLGKPRADAFGYGQ 311 F ++ LAAGT+ATTRLAL L H AP+ LLS PTAAF+LW+P LG PR FG GQ Sbjct: 280 RFCGTRLLLAAGTLATTRLALKGLNHSAPIPLLSSPTAAFLLWLPKMLGTPRVSTFGLGQ 339 Query: 312 LAFVQTLREDVTALGSTFSTVGLPMTEFARHLPLRRRLAVDVLRSLMSSCVVGNMFLPGH 371 L+F TL TA GSTFST GLPMTEF +P+ +R ++++L++L+S+C+VGN+FLPGH Sbjct: 340 LSFALTLTASTTAFGSTFSTTGLPMTEFVSRIPMSKRYSIELLKNLLSACLVGNIFLPGH 399 Query: 372 LSANQAHLTPDGRLHIRGAYHEDVPALLKQAATSLRRAYARLGAYMLPMSFTAGQPGGDI 431 LS N A L PDG L I G H ++P L+K A +LRR Y ++GA ++PMSFT G+PG DI Sbjct: 400 LSNNTAVLRPDGSLRINGQAHPELPGLMKTAEATLRRIYWKMGALLMPMSFTVGKPGADI 459 Query: 432 HYAGTLPMRERPQAGETSAIGELAGLDGLFVVDGASLPNLTEKSHTLTIMANADRIARA 490 HYAGTLPM P+ G+T IGE+AGL G+ +VDGA LP+LTEKSHTLT+MANADRIAR+ Sbjct: 460 HYAGTLPMHSTPRIGQTDCIGEVAGLGGVHIVDGACLPSLTEKSHTLTLMANADRIARS 518 >ref|ZP_07775915.1| hypothetical protein PFWH6_3330 [Pseudomonas fluorescens WH6] gb|EFQ62885.1| hypothetical protein PFWH6_3330 [Pseudomonas fluorescens WH6] Length = 514 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 261/479 (54%), Positives = 330/479 (68%), Gaps = 6/479 (1%) Query: 13 PTRSFLEERATDPRQWEWMVGERFHALGMREAISPKLRVPTHAHVFADFAQVNRVDSQGF 72 P FL RA D QW+WM+GE+FHAL +A+SPKL+ P HAHVF F+ NR+D+ F Sbjct: 31 PPGPFLSARANDEHQWKWMIGEQFHALNRLDAVSPKLKTPAHAHVFEGFSAGNRIDTDNF 90 Query: 73 IALGSLAPGGLSNAWGCGVAQLSPQELAAFPCPSDAMHDSYRTVVERIGVSRSQQDELTD 132 I +GSLA GGLSNAWGCGVA L + A P M SY TV RIG+S D+L++ Sbjct: 91 IGIGSLATGGLSNAWGCGVATLEASDFAGLPIDYSHMQRSYETVARRIGISGRLDDDLSN 150 Query: 133 YFGMQGEAQPEIALDKLHTALDQKYRRHGADLLQQGFRLGRFPVAVLSQDRGARKGCNRS 192 YFG+ +QP + LD LH L +Y R + GFRLGR VAVLSQ RK C+ S Sbjct: 151 YFGLDAWSQPPLPLDSLHQHLLDRYARRRSAFPDLGFRLGRSRVAVLSQPMNERKACDLS 210 Query: 193 GNCLFGCERRSLYSASEDLETLRQFPNFRHAR-LQVESLRQDAGQGWQVYGEDPQDRQRK 251 GNCL+GC ++LYSAS++L+ L+Q+P FRH + VE L+Q G W + P+ QR Sbjct: 211 GNCLWGCHNQALYSASQELQKLKQYPGFRHVQDFLVEDLQQQDGS-WTI--SHPRSAQR- 266 Query: 252 TFSARQVHLAAGTVATTRLALSALKHEAPVRLLSCPTAAFILWMPSFLGKPRADAFGYGQ 311 F ++ LAAGT+A+TRLAL LKH PV LLS PTAAF+LW+P LG PR AFG GQ Sbjct: 267 -FCGTRLLLAAGTLASTRLALKQLKHSPPVPLLSSPTAAFLLWLPKMLGTPRVPAFGLGQ 325 Query: 312 LAFVQTLREDVTALGSTFSTVGLPMTEFARHLPLRRRLAVDVLRSLMSSCVVGNMFLPGH 371 L+F L TA GSTFST GLPMTEF +PL +R ++++L++L+++CVVGN+FLPGH Sbjct: 326 LSFALALTPSATAFGSTFSTTGLPMTEFVSRIPLSKRYSIELLKNLLNACVVGNIFLPGH 385 Query: 372 LSANQAHLTPDGRLHIRGAYHEDVPALLKQAATSLRRAYARLGAYMLPMSFTAGQPGGDI 431 LS N A L DG L I G H ++P L+K A T LRR Y ++GA ++PMSFT G+PG DI Sbjct: 386 LSNNTAILRHDGSLKINGHMHPELPELMKTAETKLRRIYWKMGALLMPMSFTVGRPGADI 445 Query: 432 HYAGTLPMRERPQAGETSAIGELAGLDGLFVVDGASLPNLTEKSHTLTIMANADRIARA 490 HYAGTLPM P+ G+T ++GE+AGL G+ +VDGA LP LTEKSHTLT+MANADRIAR+ Sbjct: 446 HYAGTLPMHAAPRIGQTDSLGEVAGLRGVHIVDGACLPRLTEKSHTLTLMANADRIARS 504 >ref|YP_262552.1| hypothetical protein PFL_5484 [Pseudomonas fluorescens Pf-5] gb|AAY94694.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 535 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 253/496 (51%), Positives = 330/496 (66%), Gaps = 4/496 (0%) Query: 1 MVDGGRQEDVRRPTRSFLEERATDPRQWEWMVGERFHALGMREAISPKLRVPTHAHVFAD 60 MVDGG P+ FL+ R D Q WM+G FHAL +A+SPKLRVPTHA VF Sbjct: 36 MVDGGNTPRQAPPSGQFLDLRQHDASQSNWMIGRDFHALRQSDAVSPKLRVPTHAAVFNG 95 Query: 61 FAQVNRVDSQGFIALGSLAPGGLSNAWGCGVAQLSPQELAAFPCPSDAMHDSYRTVVERI 120 F NR+D+ FIA+GSLAPGGLSNAWGCGVA ++ ELA++P MH+SYR VV+R+ Sbjct: 96 FKLANRIDADDFIAVGSLAPGGLSNAWGCGVACMTDDELASYPVLPSDMHESYRDVVKRM 155 Query: 121 GVSRSQQDELTDYFGMQGEAQPEIALDKLHTALDQKYRRHGADLLQQGFRLGRFPVAVLS 180 GVS D+L+++FG+ + + +D L +L +Y LLQ GFRLGR VAVL+ Sbjct: 156 GVSGGSDDDLSEFFGLDEWSDAPVPIDSLQASLLARYPVRREKLLQSGFRLGRTRVAVLT 215 Query: 181 QDRGARKGCNRSGNCLFGCERRSLYSASEDLETLRQFPNFRH-ARLQVESLRQDAGQGWQ 239 + RG R+ C+RSGNCL+GC RR+LYSA+EDL+ LR P F + + VE + G+ Sbjct: 216 EPRGERRACDRSGNCLWGCGRRALYSATEDLQALRSRPGFHYKSGFVVERVTHKEGR--- 272 Query: 240 VYGEDPQDRQRKTFSARQVHLAAGTVATTRLALSALKHEAPVRLLSCPTAAFILWMPSFL 299 V E + AR+V LAAGT+A+TRLAL A+ H APV + SCPTAAF+LW+P +L Sbjct: 273 VTVEGRGEEGAGALQARRVLLAAGTLASTRLALQAVDHRAPVPMQSCPTAAFMLWLPRYL 332 Query: 300 GKPRADAFGYGQLAFVQTLREDVTALGSTFSTVGLPMTEFARHLPLRRRLAVDVLRSLMS 359 G+ + AFG GQL+F L DV A GS F+++G+P+TEFARH+P +R VD+L SL+ Sbjct: 333 GRTQEAAFGLGQLSFSLGLGRDVQAFGSLFNSMGIPVTEFARHMPFGKRYGVDLLASLLP 392 Query: 360 SCVVGNMFLPGHLSANQAHLTPDGRLHIRGAYHEDVPALLKQAATSLRRAYARLGAYMLP 419 SCV+GN+FLPG ++ L + RL +RG Y E+V L+K+A L ++ +LGA ++P Sbjct: 393 SCVIGNVFLPGAMTDASLCLGAEDRLVVRGTYREEVAPLMKEAQRLLCASFRQLGAILIP 452 Query: 420 MSFTAGQPGGDIHYAGTLPMRERPQAGETSAIGELAGLDGLFVVDGASLPNLTEKSHTLT 479 SF G PG DIHYA +LPM P G+T GELAG+ G+ VVDGASL L KSHTLT Sbjct: 453 TSFKVGLPGADIHYAASLPMHANPVVGQTDRYGELAGVSGIHVVDGASLSALPAKSHTLT 512 Query: 480 IMANADRIARAALQRL 495 IMANADRIA+ RL Sbjct: 513 IMANADRIAKHLAIRL 528 >ref|ZP_06943626.1| conserved hypothetical protein [Vibrio cholerae RC385] gb|EFH72950.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 524 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 202/497 (40%), Positives = 304/497 (61%), Gaps = 8/497 (1%) Query: 1 MVDGGRQEDVRRPTRSFLEERATDPRQWEWMVGERFHALGMREAISPKLRVPTHAHVFAD 60 M+D G + PT R D +QWEWM+G+ + +L A+SPK RVPT +HVF D Sbjct: 30 MLDWGNDTALSGPTVPHYISRLNDKKQWEWMLGKTYFSLKNGGAVSPKFRVPTLSHVFKD 89 Query: 61 FAQVNRVDSQGFIALGSLAPGGLSNAWGCGVAQLSPQELA-AFPCPSDAMHDSYRTVVER 119 F++ ++ F GS+A GGLS AWG GVA + L F M+ SY TV R Sbjct: 90 FSEQLNTQTENFFVAGSMALGGLSTAWGAGVAAWDSRSLIYHFGHHYREMYTSYATVARR 149 Query: 120 IGVSRSQQDELTDYFGMQGEAQPEIALDKLHTALDQKYRRHGADLLQQGFRLGRFPVAVL 179 +G+S D++ YFG+ + I +D L + ++ YR A F+LGR +AVL Sbjct: 150 MGISGRCSDDMKYYFGLDSWSSDPIEIDPLASYINNNYRVKNAG--SNRFKLGRSRIAVL 207 Query: 180 SQDRGARKGCNRSGNCLFGCERRSLYSASEDLETLRQFPNFRHARLQVESLRQDAGQGWQ 239 ++ RG R+ C++SGNCL+GC ++++YSA DL+ L + PNF + + + + +G + Sbjct: 208 NEQRGERQKCDKSGNCLWGCGKKAIYSAKYDLDELLRSPNFTLIKDRRVTDVESQPEGSK 267 Query: 240 VYGEDPQDRQRKTFSARQVHLAAGTVATTRLALSALK-HEAPVRLLSCPTAAFILWMPSF 298 ++ +D ++S V LAAGT+++T++ + +LK + + SCP AAF+L++P F Sbjct: 268 IHAVG-RDGASYSYSTSAVFLAAGTLSSTKILVRSLKIKNKEIEVQSCPAAAFLLFIPRF 326 Query: 299 LGKP-RADAFGYGQLAF-VQTLREDVTALGSTFSTVGLPMTEFARHLPLRRRLAVDVLRS 356 G+ + FG GQL+F V+T ++D +A GS T GLP+ EF+R++P+ + A+ +L Sbjct: 327 FGRRVESSEFGLGQLSFNVKTKKKD-SAFGSLLGTQGLPLFEFSRYVPMGQANALKLLSR 385 Query: 357 LMSSCVVGNMFLPGHLSANQAHLTPDGRLHIRGAYHEDVPALLKQAATSLRRAYARLGAY 416 LM++CV+GN+FLPG+ S ++ + G + I G Y E K+ LRR + +LGA Sbjct: 386 LMNACVIGNVFLPGYFSKSKIIVDEKGNMKIEGKYDERYQTAGKEVKGLLRRNFLKLGAI 445 Query: 417 MLPMSFTAGQPGGDIHYAGTLPMRERPQAGETSAIGELAGLDGLFVVDGASLPNLTEKSH 476 + P SF QPG IHYA T PM+E+P G+ GE++GL+ +++VDG+SLPNLTEKSH Sbjct: 446 LFPFSFKFTQPGACIHYASTFPMKEKPVLGQCKLSGEVSGLENVYLVDGSSLPNLTEKSH 505 Query: 477 TLTIMANADRIARAALQ 493 TLTIMANADRIAR L+ Sbjct: 506 TLTIMANADRIAREYLK 522 >ref|YP_002279511.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58771.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 502 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 158/463 (34%), Positives = 224/463 (48%), Gaps = 22/463 (4%) Query: 31 MVGERFHALGMREAISPKLRVPTHAHVFADFAQVNRVDSQGFIALGSLAPGGLSNAWGCG 90 ++G +L + SPKL+ P + F + + GF +GSLA GGLSN WG Sbjct: 51 VLGSDLESLRADDGSSPKLQTPVSRGILERFTRDAGISGDGFKPIGSLARGGLSNIWGAQ 110 Query: 91 VAQLSPQELAAFPCPSDAMHDSYRTVVERIGVSRSQQDELTDYFGMQGEAQPEIALDKLH 150 V+ L ++A +P ++ SY V +RIG+S + D T A E L Sbjct: 111 VSYLDAGDIADWPIDLASLQGSYERVSQRIGIS-TNADFTTG-------ANSEATLPLGA 162 Query: 151 TALDQKYRRHGADLLQQGFRLGRFPVAVLSQDRGARKGCNRSGNCLFGCERRSLYSASED 210 TA D R A FRL A+LS+ R R C+ G+CL+GC ++Y++ +D Sbjct: 163 TAADVLRRHKAAKPADGSFRLFAAANAILSEARPGRAACDLRGDCLYGCPSGAIYNSRQD 222 Query: 211 LETLRQFPNFRHARLQVESLRQDAGQGWQVYGEDPQDRQRKTFSARQVHLAAGTVATTRL 270 L LR+ P+FR +Q SL +D+ GW V D +FSA ++ LAAG + T L Sbjct: 223 LLALRKSPHFRLLDMQAVSLARDS--GWTVKTADGS-----SFSAPRIILAAGVLGTAAL 275 Query: 271 ALSALKHEAP-VRLLSCPTAAFILWMPSFLGKPRADAFGYGQLAFVQTLREDVT--ALGS 327 L +RLL+ PT A L P+ L + QL + + G+ Sbjct: 276 LADLLPIGGKGLRLLNSPTLAIPLLSPARLLRSPTPTHSLAQLGLSLRYGDGASDYVTGA 335 Query: 328 TFSTVGLPMTEFARHLPLRRRLAVDVLRSLMSSCVVGNMFLPGHLSANQAHLTPDGR--L 385 + LP F +PL R+ + S +V ++ PG S + H + L Sbjct: 336 IYEIGSLPAQSFVNRMPLGRKAGRAAFELIAGSLLVATIYYPGDQSRSSIHRDAMAKKGL 395 Query: 386 HIRGAYHEDVPALLKQAATSLRRAYARLGAYMLPMSFTAGQPGGDIHYAGTLPMRERPQA 445 IRG + E + +LRR + RLG LP + A +PG D H+AGTLPM E Sbjct: 396 TIRGGFAEGFEIRAEALKKALRREWKRLGLIPLPGASLA-EPGIDAHFAGTLPMGESGPF 454 Query: 446 GETSAIGELAGLDGLFVVDGASLPNLTEKSHTLTIMANADRIA 488 G TS +GEL GL+VVDG+ LP+L+ K T+TIMANADRIA Sbjct: 455 G-TSPVGELNLHPGLYVVDGSILPDLSSKYITMTIMANADRIA 496