BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0606.p (614 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07775920.1| glycosyl transferase, family [Pseudomonas flu... 157 4e-36 ref|YP_004355015.1| membrane protein [Pseudomonas brassicacearum... 137 4e-30 ref|YP_821762.1| glycosyl transferase family protein [Candidatus... 113 9e-23 ref|ZP_07474869.1| Hypothetical protein BIBO2_1980 [Brucella sp.... 103 1e-19 ref|YP_262557.1| putative membrane protein [Pseudomonas fluoresc... 75 5e-11 >ref|ZP_07775920.1| glycosyl transferase, family [Pseudomonas fluorescens WH6] gb|EFQ62890.1| glycosyl transferase, family [Pseudomonas fluorescens WH6] Length = 783 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 166/632 (26%), Positives = 272/632 (43%), Gaps = 44/632 (6%) Query: 2 LPELGHDALAMHLNLPVRILAAKRWDFDVTQYIWSVMPFGANWLTLPPFFLDGQQAAKLM 61 +PE+GHDALAMHL +P + +W FD Y+W+VMP A+W+ + LDG+ AA+L+ Sbjct: 173 MPEVGHDALAMHLFVPSHLAQRHQWSFDANTYVWAVMPMLADWIYSNVYMLDGETAARLI 232 Query: 62 DTSFVLATAW-LSFRILAPRIGAVAALAAPALMLTLPLSMLVSGSMFVEP------VIGF 114 +++F L AW + L A +A A + L+ PL+ S S+ +E + G Sbjct: 233 NSAFTLLVAWQIRSLTLWAAGSATSARLASLIFLSTPLAFAESSSLHIESAWTAFMMAGT 292 Query: 115 LFLLCLAELTGTSEKPHGAWLYLGAIAGYLCASKLLGAPLLPILLLAVCLLARQGKFQ-- 172 L +L ++ T + W+ G + G+ A+K + +LP+LL+ + L + Q Sbjct: 293 LAILKVSRFTADPGERLSQWVLAGILLGFAMATKAVTLSVLPVLLVVLLLHYKAWAIQGL 352 Query: 173 RPTFLVVAAAVAVFLLVSCQPYVVAYLKTGNPLFPFYNNIFKSPFFTIGSVFKNEQAFAN 232 T L+ +A + +L PYV A+ TGNP+FPF+N IF SP + FK F Sbjct: 353 AKTLLLGSAGL---ILAGATPYVSAWYLTGNPVFPFFNAIFHSPLWP-SLDFKPPATF-- 406 Query: 233 PLYLHPLGLGMFWDASIKSMGYGEFGADGAIGIVFL--VLIPLALLTAILTRHWWVLGGL 290 G GM WD + + +G IG +L+P A + +L+ + L L Sbjct: 407 -------GTGMSWDTLYRMVFNSPQFIEGRIGAAGFQWLLLPTAAVAVLLSGNKKALCIL 459 Query: 291 LATTFYCALVFQTQAYLRYVYQMLPWFIVFGAWALAR---LSKAALTASALVLLLCLVSL 347 L L F + AYLRYV+ F V A + ++ +A VL+L Sbjct: 460 LVGAGALFLTFHSTAYLRYVFPSFALFSVILALPFSDTRIFPRSLAIVAASVLILANTRF 519 Query: 348 ARYPVVYWPLMQFSPRLLVDRDAHRAMLERSKPAVIIGDILQQMDSLRSKQILIVGTDPV 407 + Y + P L + A L + P + D + +++ Q + V P+ Sbjct: 520 IQAATYYGDI---KPSALFSQVGRDAYLAQRLPIRNMVDTVNALNN--GDQPVAVFAPPL 574 Query: 408 YSHYPAGTIAFSWHSWPF---FSSPERDTNFKKLLRDFDIE-VIVHPVGQNESHEADIMS 463 + + SW++ + F + + LR + +++ ++ +++ Sbjct: 575 MAGLRGDALYASWYNLKWKGEFDTATSPAQLAQRLRQRRVSWLVIDLKALPQAPLERLLA 634 Query: 464 VTTELFRLNGMRVGLVKTDGLFRVERVAGPVLDQPGPKWDLNGNAVVKGG---VTATVTH 520 V+T RL + L K D + E + P L W L +T V Sbjct: 635 VSTSYARLGDL--DLRKLD-VTHHEHLLNPDLSSL-EGWSLTSPTTYDASRNILTVNVNT 690 Query: 521 PIYQTIDVKGQRRGLLHVKVSCP-EGTHFRSQVNWINSRGEMSSTDIEVHSCHGENTIID 579 P Q + V + V C T R Q NW++ RG+ ST IE C + + Sbjct: 691 PATQRVAVTPGMTYINSVSARCATTATTGRIQANWMDDRGDFISTRIETFDCTTQWETHE 750 Query: 580 RAVAIPAGTVQGIVFGSSHDERPVTVGEISFK 611 V PA I++ S H + PV +SF+ Sbjct: 751 MNVVAPANATSAIIYASGHTDTPVAFKSLSFR 782 >ref|YP_004355015.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70011.1| Hypothetical protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 810 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 163/632 (25%), Positives = 267/632 (42%), Gaps = 44/632 (6%) Query: 2 LPELGHDALAMHLNLPVRILAAKRWDFDVTQYIWSVMPFGANWLTLPPFFLDGQQAAKLM 61 +PE+GHDALAMHL +P + +W FD Y+W+VMP A+W+ + L G+ A++L Sbjct: 200 MPEVGHDALAMHLFVPSHLAQQHQWKFDANTYVWAVMPMLADWIYSIVYMLAGETASRLS 259 Query: 62 DTSFVLATAW-LSFRILAPRIGAVAALAAPALMLTLPLSMLVSGSMFVEP------VIGF 114 +++F L AW + L A +A A + L+ PL+ S S+ +E + G Sbjct: 260 NSAFTLLLAWQIRNMTLWAGGSATSARWASLIFLSTPLAFAESSSLHIESAWTAFMMAGT 319 Query: 115 LFLLCLAELTGTSEKPHGAWLYLGAIAGYLCASKLLGAPLLPILLLAVCLLARQGKFQRP 174 L +L ++ T + L G + G+ A+K L + +L V LL + P Sbjct: 320 LAILKVSSFTPEPRERLSQLLLAGLLLGFAMATK--AVTLSVLPVLLVILLLHYKAWAVP 377 Query: 175 TFL-VVAAAVAVFLLVSCQPYVVAYLKTGNPLFPFYNNIFKSPFFTIGSVFKNEQAFANP 233 + + A +L PYV A TGNP+FPF+N IF SP + + F P Sbjct: 378 GIVKTLLLGSAGLILAGATPYVSAGYLTGNPVFPFFNAIFHSPLWP-------DIDFEPP 430 Query: 234 LYLHPLGLGMFWDA----SIKSMGYGEFGADGAIGIVFLVLIPLALLTAILTRHWWVLGG 289 G G+ WD KS + E G GA G +L L+P A + +L+ + L Sbjct: 431 AI---FGTGVTWDTLYRMVFKSPQFIE-GRVGAAGFQWL-LLPTAAVAVLLSGNKKALCI 485 Query: 290 LLATTFYCALVFQTQAYLRYVYQMLPWFIVFGA--WALARLSKAALTASALVLLLCLVSL 347 LL + F + AYLRYV+ F V A ++ AR+ +L A +L+ + Sbjct: 486 LLVGAGAMFMTFHSTAYLRYVFPSFALFSVILALPFSDARIFPRSLAIVAGAVLVLTNTR 545 Query: 348 ARYPVVYWPLMQFSPRLLVDRDAHRAMLERSKPAVIIGDILQQMDSLRSKQILIVGTDPV 407 Y+ + P L+ A L P + D + +++ Q + V P+ Sbjct: 546 FIQAATYYG--EIKPSALLSTAGRDAYLLERLPIRKMVDTVNALNT--GHQPVAVFASPL 601 Query: 408 YSHYPAGTIAFSWHSWPF---FSSPERDTNFKKLLRDFDIEVIVHPVGQNESHEAD-IMS 463 + + SW++ + F + + + LR + +V + D +++ Sbjct: 602 MAGLHGDALYASWYNLKWKSEFDAAASPSELAQRLRRRQVSWLVIDLKSLPQAPLDRLLT 661 Query: 464 VTTELFRLNGMRVGLVKTDGLFRVERVAGPVLDQPGPKWDLNGNAVVKGG---VTATVTH 520 V+T RL M + + E + P L W L + +T +V Sbjct: 662 VSTSYARLGDMELRKLNDT---HYEHLLNPELSSL-EGWSLTSPSTYDAARKILTVSVKT 717 Query: 521 PIYQTIDVKGQRRGLLHVKVSCP-EGTHFRSQVNWINSRGEMSSTDIEVHSCHGENTIID 579 P Q +DV V C T R Q NW++ +G+ +T IE C + + Sbjct: 718 PATQRVDVTPGLTYFNSVSARCATTATAGRIQANWMDEQGDFITTSIETFDCTTQWETHE 777 Query: 580 RAVAIPAGTVQGIVFGSSHDERPVTVGEISFK 611 V PA I++ S H + P+ +SF+ Sbjct: 778 MNVVAPANATSVIIYASGHTDTPLEFKSLSFR 809 >ref|YP_821762.1| glycosyl transferase family protein [Candidatus Solibacter usitatus Ellin6076] gb|ABJ81477.1| glycosyl transferase, family 2 [Candidatus Solibacter usitatus Ellin6076] Length = 1167 Score = 113 bits (283), Expect = 9e-23, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 163/343 (47%), Gaps = 14/343 (4%) Query: 3 PELGHDALAMHLNLPVRILAAKRWDFDVTQYIWSVMPFGANWLTLPPFFLDGQQAAKLMD 62 PE D L+MHL +P I A F+ ++Y+W+VMP GA++ + L G+ A++L++ Sbjct: 546 PEASADGLSMHLAVPANIAANHVMTFEPSRYLWAVMPMGADFTYTIVYLLGGEMASRLLN 605 Query: 63 TSFVLATAWLSFRILAPRIGAVAALAAPALMLTLPLSMLVSGSMFVEPVIGFLFLLCLAE 122 +L L F L + A AL T P+ LV+GS+FVE ++ + + Sbjct: 606 FIVLLVLLALLFYTLRRWVSRAIAWLLVALFATTPMVQLVTGSLFVENLLAAMIFGSMVA 665 Query: 123 LTGTSEKPHGAWLYLGAIAGYLCASKLLGAPLLPILLLAVCLLARQGKFQRPTFLVVAAA 182 + + +LY+ ++ + +GA ++ +C + +R T A Sbjct: 666 IWSFGDTGQRRFLYIASVLSGTAIAIKVGAVAF-VVPAMICAGFEIWRHRRETGARWLIA 724 Query: 183 VAVFLLVSCQPYVVAYLKTGNPLFPFYNNIFKSPFFTIGSVFKNEQAFANPLYLHPLGLG 242 +A+ + + PY++A+ KTGNPLFPF N ++SP + ++++ + PL Sbjct: 725 LALLVAAAAPPYLIAWRKTGNPLFPFLNAKYRSPLLDSKADIQDKR------FRKPLTWD 778 Query: 243 MFWDASIKSMGYGEFGADGAIGIVFLVLIPLALLTAILTRHWWVLGGLLATTFYCALVFQ 302 M + + +S Y E G DG++G ++VL PLA L + + + ++ Sbjct: 779 MPYGLTFRSNSYYE-GQDGSVGFQYVVLAPLAFLVLLAGKRRRAVAAAFVALTATLVILG 837 Query: 303 TQAYLRYVYQMLPWFIV----FGAWALA--RLSKAALTASALV 339 ++ RY+Y L + V F WA+A R+ AL A +V Sbjct: 838 SEPNARYLYPALSLYCVPFAAFLGWAIAQHRVLARALIAFTIV 880 >ref|ZP_07474869.1| Hypothetical protein BIBO2_1980 [Brucella sp. BO2] gb|EFM59126.1| Hypothetical protein BIBO2_1980 [Brucella sp. BO2] Length = 790 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 107/465 (23%), Positives = 193/465 (41%), Gaps = 45/465 (9%) Query: 2 LPELGHDALAMHLNLPVRILAAKRWDFDVTQYIWSVMPFGANWLTLPPFFLDGQQAAKLM 61 P +G+D A HL + + + FDVT IW V PF N + L G+ A + Sbjct: 191 FPTIGYDDNANHLRIWTELSYQHHFTFDVTNQIWEVAPFAVNLIHAIVSLLAGEDARTAV 250 Query: 62 DTSFVLATAWLSFRIL-------APRIGAVAALAAPALMLTLPLSMLVSGSMFVEPVIGF 114 + +F+ W +L A R+ V + + L+ L +SM F Sbjct: 251 NLAFMGILIWQMIGLLRLIDVQPAERLLVVLLVVSTPLLANLLISMQTEL---------F 301 Query: 115 LFLLCLAELTGTSEKPHGAWLYLG-----AIAGYLCASKL----LGAPLLPILLLAVCLL 165 L LLCLA + HG WL A+ A+KL LGA L + ++ + Sbjct: 302 LALLCLAGVRLALAGNHG-WLGYNVLPILAVISLCVATKLPGVVLGAGLFVMAIVYILTS 360 Query: 166 ARQGKFQRPTFLVVAAAVAVFLLVSCQPYVVAYLKTGNPLFPFYNNIFKSPFFTIGSVFK 225 R+ + ++V+ A+ + + Y+VAY TGNP+FP YN +FKSPF+ Sbjct: 361 ERRSENFNIRYMVLMTAILLICFAAFHSYIVAYRITGNPIFPLYNAVFKSPFYF------ 414 Query: 226 NEQAFANPLYLHPLGLGMFWDASIKSMGYGEFGADGAIGIVFLVLIPLALLTAILTRHWW 285 E+ F++ ++ +W+ ++ + E + G F+ L+P A L + Sbjct: 415 -EKNFSDARWIRGFSFMSYWNVFFETSHFFE-AKNFTAGFQFIFLLPFAFLVIFFRKDLK 472 Query: 286 VLGGL-LATTFYCALVFQTQAYLRYVYQMLPWFIVFGAWALARLSKAALTASALVLLLCL 344 + + + Y +FQ Y RY++ ++P + A AL + K + + L C+ Sbjct: 473 LYRLMCIPIIIYGVPMFQATQYWRYMFPVMPISTIIIAAALDQQLKWGASLFKGIALGCI 532 Query: 345 -VSLARYPVVYWPLMQFSPRLLVDRDAHRAMLERSKPAVIIGDILQQMDSLRSKQILIVG 403 ++L P V W + +P+ + +E ++ D++ + ++L + Sbjct: 533 GLNLYFLPGVSW-IFTVAPQSVFSEAGKERYIELQAGDKVLTDLVGR--DFNDARVLYLP 589 Query: 404 TDPVYSHYPAGTIAFSWHSWPFFSSPERDTNFKKLLRDFDIEVIV 448 + P + + SW+ SP R+ F + + D + Sbjct: 590 SRPYGATLRGSPLYVSWY------SPRREAAFSLIKSEADAAAFI 628 >ref|YP_262557.1| putative membrane protein [Pseudomonas fluorescens Pf-5] gb|AAY94698.1| putative membrane protein [Pseudomonas fluorescens Pf-5] Length = 717 Score = 74.7 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 32/310 (10%) Query: 3 PELGHDALAMHLNLPVRILAAKRWDFDVTQYIWSVMPFGANWLTLPPFFLDGQQAAKL-M 61 P DA MH+ + + + W +DV++Y+++VMP + F G +A K+ + Sbjct: 231 PGFDGDAATMHMRIALEMQTKGTWAYDVSEYVFAVMPLAPQFNFSAMFIAGGVEAVKVDL 290 Query: 62 DTSFVLATAWLS----FRILAPRIGAVAALAAPALMLTLPLSMLVSGSMFVEPVI-GFLF 116 F+ A ++ FR+ A I A A +P+ + +F+E + GF+ Sbjct: 291 VLQFLALLALVATGGGFRLRATGIAMAAVFA------FVPMFVREVSGLFIEVTLCGFIL 344 Query: 117 LLCLAELTGTSEKPHGAWLYLGAIAGYLCASKLLGAPLLPILLLAVCLLARQ-----GKF 171 + + + L G A A+K G L P++LL + + RQ +F Sbjct: 345 ASAVLMTSSLRHRSIELALLAGLCAAGASATKTFGLLLAPLVLLVLVVNWRQLGNTRDRF 404 Query: 172 QRPTFLVVAAAVAVFLLVSCQPYVVAYLKTGNPLFPFYNNIFKSPFFTIGSVFKNEQAFA 231 + L+ A+A+F YVVA+LKTGNPLFPFYN IFKSP++ F Sbjct: 405 RLSVILLATLALALFF------YVVAWLKTGNPLFPFYNGIFKSPYWA-------PTNFL 451 Query: 232 NPLYLHPLGLGMFWDASIKSMGYGEFGADGAIGIVFLVLIP-LALLTAILTRHWWVLGGL 290 + ++ + + W + +S Y E +DG++G+V L L+ + L A+ R+ L L Sbjct: 452 DRRWIDHVDWNLPWRMTFESSRYEE-SSDGSMGLVLLFLLACTSSLIALRRRNLVALVPL 510 Query: 291 LATTFYCALV 300 L Y A V Sbjct: 511 LVGVIYLAAV 520