BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0599.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004388120.1| amine oxidase [Alicycliphilus denitrificans ... 634 e-179 ref|YP_004126613.1| amine oxidase [Alicycliphilus denitrificans ... 632 e-179 ref|YP_003377174.1| protoporphyrinogen oxidase [Xanthomonas albi... 506 e-141 ref|ZP_04631546.1| Protoporphyrinogen oxidase [Yersinia frederik... 451 e-124 ref|YP_727335.1| hypothetical protein H16_A2891 [Ralstonia eutro... 446 e-123 >ref|YP_004388120.1| amine oxidase [Alicycliphilus denitrificans K601] gb|AEB84604.1| amine oxidase [Alicycliphilus denitrificans K601] Length = 443 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 298/430 (69%), Positives = 348/430 (80%), Gaps = 1/430 (0%) Query: 6 RVSVAVIGGGFTGLSAAYELSKARASVAVLEAEEELGGLAAAFAVEGEKLDRFYHHWFTN 65 + + +IGGGFTGL+AAYEL K+ V VLE+E E+GGLAAAF V GEKLDRFYHHWFTN Sbjct: 7 QTEITIIGGGFTGLTAAYELVKSGIKVTVLESEPEIGGLAAAFDVGGEKLDRFYHHWFTN 66 Query: 66 DLEVMHLIDEIGLSDKVTINPTNTGMYYANQFFKLSTPMDLLRFTPLGFFDRIRLGLLAL 125 DLEVM LI+E+GL +KV INPTNTG+YYAN FFKLSTP DLL FTPL F DRIRLGLLAL Sbjct: 67 DLEVMTLIEELGLQNKVEINPTNTGVYYANNFFKLSTPWDLLNFTPLAFLDRIRLGLLAL 126 Query: 126 RARRVKNWMELEDKTAEQWLKELGGESVFRVVWEPLLKGKFGEAAARKVSAVWFWNKLKL 185 RARRVKNW LE KTA +WLK LGGE+V+RVVW+PLLKGKFG A VSAVWFWNKLKL Sbjct: 127 RARRVKNWKNLEAKTAHEWLKSLGGENVYRVVWQPLLKGKFG-PYAEDVSAVWFWNKLKL 185 Query: 186 RGGSRGKGGEERLAYLKGGFVSIATRLAERITQAGGHVITRAPVQSFRRDDGLWQVQTPK 245 RGGSRGKGGEERLAY KGGFV++A LA+RI GG + PV S ++ G W V+T Sbjct: 186 RGGSRGKGGEERLAYFKGGFVALAEALAQRIRDLGGIIAVNTPVSSVTKEGGDWIVKTTD 245 Query: 246 GVIVADHVIATPALPLIADMVKDWASPDYLQQLRRIEYLGNVCLVLELNNSLSSTYWLNV 305 G I + +I T ALP+I++M+K WA +YL L RI+Y+GNVCLVLEL+ LS TYWLNV Sbjct: 246 GTISSKRIIFTTALPIISEMIKSWAPSEYLDSLNRIQYIGNVCLVLELDRPLSETYWLNV 305 Query: 306 NDPTFPFVGVIEHTNFESTDTYGGRHIVYLSKYLPVDEALYSMSADEVLAYAMPHLKRMF 365 NDP+FPFVGVIEHTNFE +TYGGRHIVYLSKYLP + LYSM+ADE L YA+P +++MF Sbjct: 306 NDPSFPFVGVIEHTNFERPETYGGRHIVYLSKYLPHTDRLYSMTADEFLDYAIPFIQKMF 365 Query: 366 PRFDESWILDHKVWKSRWSQPVVEKHYSRLIPSAEGPLPGLHIASMAQIYPEDRGTNYAV 425 PRFD +WI H +W++RWSQPVVEK+YS LIP +GP GLHI +MAQIYPEDRGTNYA+ Sbjct: 366 PRFDRTWIQKHHLWRARWSQPVVEKYYSTLIPDEDGPAEGLHICTMAQIYPEDRGTNYAI 425 Query: 426 REGRKIGRHV 435 REGR+IGR + Sbjct: 426 REGRRIGRKI 435 >ref|YP_004126613.1| amine oxidase [Alicycliphilus denitrificans BC] gb|ADU99725.1| amine oxidase [Alicycliphilus denitrificans BC] Length = 443 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 298/430 (69%), Positives = 347/430 (80%), Gaps = 1/430 (0%) Query: 6 RVSVAVIGGGFTGLSAAYELSKARASVAVLEAEEELGGLAAAFAVEGEKLDRFYHHWFTN 65 + + +IGGGFTGL+AAYEL K+ V VLE+E E+GGLAAAF V GEKLDRFYHHWFTN Sbjct: 7 QTEITIIGGGFTGLTAAYELVKSGIKVTVLESEPEIGGLAAAFDVGGEKLDRFYHHWFTN 66 Query: 66 DLEVMHLIDEIGLSDKVTINPTNTGMYYANQFFKLSTPMDLLRFTPLGFFDRIRLGLLAL 125 DLEVM LI E+GL +KV INPTNTG+YYAN FFKLSTP DLL FTPL F DRIRLGLLAL Sbjct: 67 DLEVMTLIGELGLQNKVEINPTNTGVYYANNFFKLSTPWDLLNFTPLAFLDRIRLGLLAL 126 Query: 126 RARRVKNWMELEDKTAEQWLKELGGESVFRVVWEPLLKGKFGEAAARKVSAVWFWNKLKL 185 RARRVKNW LE KTA +WLK LGGE+V+RVVW+PLLKGKFG A VSAVWFWNKLKL Sbjct: 127 RARRVKNWKNLEAKTAHEWLKSLGGENVYRVVWQPLLKGKFG-PYAEDVSAVWFWNKLKL 185 Query: 186 RGGSRGKGGEERLAYLKGGFVSIATRLAERITQAGGHVITRAPVQSFRRDDGLWQVQTPK 245 RGGSRGKGGEERLAY KGGFV++A LA+RI GG + PV S ++ G W V+T Sbjct: 186 RGGSRGKGGEERLAYFKGGFVALAEALAQRIRDLGGIIAVNTPVSSVTKEGGDWIVKTTD 245 Query: 246 GVIVADHVIATPALPLIADMVKDWASPDYLQQLRRIEYLGNVCLVLELNNSLSSTYWLNV 305 G I + +I T ALP+I++M+K WA +YL L RI+Y+GNVCLVLEL+ LS TYWLNV Sbjct: 246 GTISSKRIIFTTALPIISEMIKSWAPSEYLDSLNRIQYIGNVCLVLELDRPLSETYWLNV 305 Query: 306 NDPTFPFVGVIEHTNFESTDTYGGRHIVYLSKYLPVDEALYSMSADEVLAYAMPHLKRMF 365 NDP+FPFVGVIEHTNFE +TYGGRHIVYLSKYLP + LYSM+ADE L YA+P +++MF Sbjct: 306 NDPSFPFVGVIEHTNFERPETYGGRHIVYLSKYLPHTDRLYSMTADEFLDYAIPFIQKMF 365 Query: 366 PRFDESWILDHKVWKSRWSQPVVEKHYSRLIPSAEGPLPGLHIASMAQIYPEDRGTNYAV 425 PRFD +WI H +W++RWSQPVVEK+YS LIP +GP GLHI +MAQIYPEDRGTNYA+ Sbjct: 366 PRFDRTWIQKHHLWRARWSQPVVEKYYSTLIPDEDGPAEGLHICTMAQIYPEDRGTNYAI 425 Query: 426 REGRKIGRHV 435 REGR+IGR + Sbjct: 426 REGRRIGRKI 435 >ref|YP_003377174.1| protoporphyrinogen oxidase [Xanthomonas albilineans GPE PC73] emb|CBA17180.1| probable protoporphyrinogen oxidase protein [Xanthomonas albilineans] Length = 441 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 241/437 (55%), Positives = 312/437 (71%), Gaps = 4/437 (0%) Query: 1 MSEQIRVSVAVIGGGFTGLSAAYELSKARASVAVLEAEEELGGLAAAFAVEGEKLDRFYH 60 MS Q AV+GGGF GLS AYE++KA V V+E + ELGGLA F V E L++FYH Sbjct: 1 MSNQFHT--AVVGGGFAGLSVAYEIAKAGKRVVVIERDGELGGLAGGFKVGDEVLEKFYH 58 Query: 61 HWFTNDLEVMHLIDEIGLSDKVTINPTNTGMYYANQFFKLSTPMDLLRFTPLGFFDRIRL 120 HWF ND E+ LI+E+G +K+ + PT TGMYYA+QFF+LSTP+DLLRF L F DRIRL Sbjct: 59 HWFNNDAEIFKLIEELGEREKILLRPTRTGMYYADQFFRLSTPLDLLRFKALPFHDRIRL 118 Query: 121 GLLALRARRVKNWMELEDKTAEQWLKELGGESVFRVVWEPLLKGKFGEAAARKVSAVWFW 180 G+ LRAR VK+W +LE +A++WL +L G++ + VVW+PLL GKFG+ A VSAVWFW Sbjct: 119 GIAVLRARSVKDWKQLEKLSAKEWLIDLCGQNAYDVVWDPLLVGKFGDVA-DDVSAVWFW 177 Query: 181 NKLKLRGGSRGKGGEERLAYLKGGFVSIATRLAERITQAGGHVITRAPVQSFRRDDGLWQ 240 KL LRGGSR G+E LAY KGGF +A RL E I++ GG + D G Sbjct: 178 KKLVLRGGSRSSSGDEVLAYYKGGFAELANRLGEEISKLGGEIRLSTRALRVTTDAGSAT 237 Query: 241 -VQTPKGVIVADHVIATPALPLIADMVKDWASPDYLQQLRRIEYLGNVCLVLELNNSLSS 299 V+T G + A++V+ + A P+ AD+++ A DYL +LRR+ YL NVC+VL L+ SLS Sbjct: 238 GVETSDGAVTAENVVLSTAFPITADLLEGSAPQDYLDRLRRVRYLSNVCMVLSLDRSLSD 297 Query: 300 TYWLNVNDPTFPFVGVIEHTNFESTDTYGGRHIVYLSKYLPVDEALYSMSADEVLAYAMP 359 TYWLNVNDP FP+VGVIEHTNFE +YGGRHIVYLSKYLP +Y+MS +E+L +++P Sbjct: 298 TYWLNVNDPGFPYVGVIEHTNFEPPSSYGGRHIVYLSKYLPPSHLMYTMSDEELLDFSVP 357 Query: 360 HLKRMFPRFDESWILDHKVWKSRWSQPVVEKHYSRLIPSAEGPLPGLHIASMAQIYPEDR 419 HL++MFP F+ SWI D VW++ ++QP+ EKHYS+ +P PL + SMAQ+YPEDR Sbjct: 358 HLQKMFPEFNRSWIQDVHVWRADYAQPIAEKHYSQFVPGRATPLANTFVTSMAQVYPEDR 417 Query: 420 GTNYAVREGRKIGRHVV 436 GTNYAVREGR +GR ++ Sbjct: 418 GTNYAVREGRDLGRSIL 434 >ref|ZP_04631546.1| Protoporphyrinogen oxidase [Yersinia frederiksenii ATCC 33641] gb|EEQ15735.1| Protoporphyrinogen oxidase [Yersinia frederiksenii ATCC 33641] Length = 439 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 215/433 (49%), Positives = 295/433 (68%), Gaps = 3/433 (0%) Query: 11 VIGGGFTGLSAAYELSKARASVAVLEAEEELGGLAAAFA-VEGEKLDRFYHHWFTNDLEV 69 ++G GFTGL+ AY L+K V V+EA+ GGLA F +G KL++FYHHWF ND+ V Sbjct: 8 IVGAGFTGLTTAYVLAKQGKKVKVIEADSTPGGLAGTFEFADGVKLEKFYHHWFNNDIYV 67 Query: 70 MHLIDEIGLSDKVTINPTNTGMYYANQFFKLSTPMDLLRFTPLGFFDRIRLGLLALRARR 129 L+ E+G+ V + PT TGMY+ + +KLSTP+DLLRF L DRIRLGLL + RR Sbjct: 68 PELVKELGMEGDVILLPTRTGMYFNGRMWKLSTPLDLLRFKALSLIDRIRLGLLVFQVRR 127 Query: 130 VKNWMELEDKTAEQWLKELGGESVFRVVWEPLLKGKFGEAAARKVSAVWFWNKLKLRGGS 189 +K+W +E + +WL+ L G++V+++VWEPL++ KF A V+AVW W KL LRG + Sbjct: 128 IKDWKTIEHLSIREWLEPLCGKAVYKIVWEPLIESKF-SIYAEAVNAVWMWKKLVLRGST 186 Query: 190 RGKGGEERLAYLKGGFVSIATRLAERITQAGGHVITRAPVQSFRRDD-GLWQVQTPKGVI 248 R G E LAY KGGF +A + I QAGG VI V + + +QT + + Sbjct: 187 RNDKGGEELAYFKGGFGRLAEAMVTAIEQAGGEVIFNTKVTGITSEGRSITTLQTSQTEV 246 Query: 249 VADHVIATPALPLIADMVKDWASPDYLQQLRRIEYLGNVCLVLELNNSLSSTYWLNVNDP 308 + TP+LP+IA++ K+ A +++ +L R+ YLGN+CLVL LN SLS TYWLNVNDP Sbjct: 247 HGKEFLFTPSLPIIANIFKENAPSEWIDKLNRVRYLGNMCLVLRLNCSLSETYWLNVNDP 306 Query: 309 TFPFVGVIEHTNFESTDTYGGRHIVYLSKYLPVDEALYSMSADEVLAYAMPHLKRMFPRF 368 FPFVGVIEHTNF+ST+ Y G HI YLS+YL ++ +++ S +E + +A+ HLKRMFP Sbjct: 307 GFPFVGVIEHTNFDSTENYKGSHIAYLSRYLATEDPVWAYSDEEYVNFALQHLKRMFPEM 366 Query: 369 DESWILDHKVWKSRWSQPVVEKHYSRLIPSAEGPLPGLHIASMAQIYPEDRGTNYAVREG 428 D+SW+++HKVW+S ++QPV E+ YS+ +PS E P I++MAQIYPEDRGTNYA+REG Sbjct: 367 DKSWVIEHKVWRSEYAQPVTERGYSQYVPSEETPFDNGSISTMAQIYPEDRGTNYAIREG 426 Query: 429 RKIGRHVVGLLGK 441 RKI + + L K Sbjct: 427 RKIAKSISERLSK 439 >ref|YP_727335.1| hypothetical protein H16_A2891 [Ralstonia eutropha H16] emb|CAJ93967.1| protoporphyrinogen oxidase [Ralstonia eutropha H16] Length = 434 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 214/425 (50%), Positives = 290/425 (68%), Gaps = 3/425 (0%) Query: 9 VAVIGGGFTGLSAAYELSKARASVAVLEAEEELGGLAAAFA-VEGEKLDRFYHHWFTNDL 67 V V+G GFTGL+AAY L+K V V+EA+ GGLA F +G KL++FYHHWF ND+ Sbjct: 6 VVVVGAGFTGLTAAYALAKQGKKVHVVEADATPGGLAGTFEFADGVKLEKFYHHWFNNDV 65 Query: 68 EVMHLIDEIGLSDKVTINPTNTGMYYANQFFKLSTPMDLLRFTPLGFFDRIRLGLLALRA 127 V L+ E+G+ V + PT TGMY+ + +KLSTP+DLL+F L F DRIRLGLL + Sbjct: 66 YVPELVKELGMEGDVILLPTRTGMYFNGRMWKLSTPLDLLKFKALSFIDRIRLGLLVFQV 125 Query: 128 RRVKNWMELEDKTAEQWLKELGGESVFRVVWEPLLKGKFGEAAARKVSAVWFWNKLKLRG 187 RR+K+W +E + +WL+ + G++V+R+VWEPL+ KF A V+AVW W KL LRG Sbjct: 126 RRIKDWKTIEHLSIREWLEPICGKTVYRIVWEPLISSKF-SVYAEAVNAVWMWKKLVLRG 184 Query: 188 GSRGKGGEERLAYLKGGFVSIATRLAERITQAGGHVITRAPVQSFRRD-DGLWQVQTPKG 246 +R G E LAY KGGF +A + I +AGG V + V D + ++T +G Sbjct: 185 STRNDKGGEELAYFKGGFGRLAEAMVAAIERAGGEVTFKNKVNGVLADGKKITGLETEQG 244 Query: 247 VIVADHVIATPALPLIADMVKDWASPDYLQQLRRIEYLGNVCLVLELNNSLSSTYWLNVN 306 + + TP+ P+IADM + A P++L +LRR+ YLGNVCLVL LN SLS TYWLNVN Sbjct: 245 ELKGKQYLFTPSFPIIADMFEGTAPPEWLARLRRVRYLGNVCLVLRLNQSLSETYWLNVN 304 Query: 307 DPTFPFVGVIEHTNFESTDTYGGRHIVYLSKYLPVDEALYSMSADEVLAYAMPHLKRMFP 366 DP FPFVGVIEHTNF+ + Y G HI YLS+YL V++ ++ + ++ + +A HLKRMFP Sbjct: 305 DPGFPFVGVIEHTNFDKPENYQGSHIAYLSRYLAVEDPVWGYTDEQYVDFAFEHLKRMFP 364 Query: 367 RFDESWILDHKVWKSRWSQPVVEKHYSRLIPSAEGPLPGLHIASMAQIYPEDRGTNYAVR 426 + D SWI++H+VW+S ++QPV E+ YS +PS E P I++MAQIYPEDRGTNYA+R Sbjct: 365 KMDRSWIVEHRVWRSMYAQPVTERQYSEYVPSEETPYENGWISTMAQIYPEDRGTNYAIR 424 Query: 427 EGRKI 431 EG++I Sbjct: 425 EGKRI 429