BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0590.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773909.1| UDP-glucose 4-epimerase [Herbaspirillum sero... 394 e-108 ref|YP_001667620.1| NAD-dependent epimerase/dehydratase [Pseudom... 372 e-101 ref|YP_004352774.1| NAD-dependent epimerase/dehydratase [Pseudom... 370 e-100 ref|YP_913027.1| NAD-dependent epimerase/dehydratase [Chlorobium... 366 3e-99 ref|YP_550778.1| NAD-dependent epimerase/dehydratase [Polaromona... 364 9e-99 >ref|YP_003773909.1| UDP-glucose 4-epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ62001.1| UDP-glucose 4-epimerase protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 206/316 (65%), Positives = 242/316 (76%) Query: 14 MRILVTGASGFVGSALLRHLAPRPDLALRAALRTAASGGLLPAGVEVVETGDLGPQTNWH 73 M ILVTGASGFVG ALL L LR A R ++ + +E L P+T+W Sbjct: 1 MHILVTGASGFVGRALLSRLDSEGQHLLRGAFRPSSETVMDRERIERTVISGLDPETDWS 60 Query: 74 AALTGIDTVVHCAARVHVMNETAGDPLSLFRRVNVEGSLALAQQARDAGVKRLVFLSSIK 133 AAL I+ VVHCAARVHVMNETAGDPL+ FRR+N+EGSLALA+QA+ AGV+R +FLSSIK Sbjct: 61 AALHNIEAVVHCAARVHVMNETAGDPLAEFRRINLEGSLALARQAQQAGVQRFIFLSSIK 120 Query: 134 VNGEQTAPGRPFTADDTPAPVDAYGISKMEAEQALMALAAEGGMEVVVIRPVLVYGPGVK 193 VNGEQT+ GRPFTADD PAP D YGISKMEAEQAL+ L G M+VV+IRPVLVYGPGVK Sbjct: 121 VNGEQTSLGRPFTADDKPAPTDPYGISKMEAEQALLELGRTGKMQVVIIRPVLVYGPGVK 180 Query: 194 ANFRSMMRWLQKGIPLPLGAITGNRRSLVALDNLVDLMTLCMHHPAAANEIFLVSDGEDL 253 ANF SMMRWL KG+PLPLG IT NRRSLVALDNLVDL+T+C+ HPAAA ++FL SDGEDL Sbjct: 181 ANFLSMMRWLDKGMPLPLGGITHNRRSLVALDNLVDLITVCLAHPAAAGQVFLASDGEDL 240 Query: 254 STTELLRRMGQALGSPARLIPVPARVLEWGARLLGKGAVAQRLCGSLQVEIGKTRSVLDW 313 STT +L+R+G+AL L+PVPA L ARL+GK +AQRLCGSLQV+I K R +L W Sbjct: 241 STTGMLQRLGRALDKSPTLLPVPASWLTLAARLMGKKGIAQRLCGSLQVDISKNRELLGW 300 Query: 314 SPPVSTDVALRRAASA 329 SPP++ D A R+ A Sbjct: 301 SPPITVDAAFRKTVDA 316 >ref|YP_001667620.1| NAD-dependent epimerase/dehydratase [Pseudomonas putida GB-1] gb|ABY97284.1| NAD-dependent epimerase/dehydratase [Pseudomonas putida GB-1] Length = 321 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 201/313 (64%), Positives = 232/313 (74%), Gaps = 4/313 (1%) Query: 15 RILVTGASGFVGSALLRHLAPRPDLALRAALRTAASGGLLPAGVEVVETGDLGPQTNWHA 74 R+ +TGASGFVGSA+L L + S LP V+ V W Sbjct: 4 RVFLTGASGFVGSAVLHRLLAD---GMPTVATVRGSSLSLPPAVQAVPFDSFEEAGQWGE 60 Query: 75 ALTGIDTVVHCAARVHVMNETAGDPLSLFRRVNVEGSLALAQQARDAGVKRLVFLSSIKV 134 AL G DTV+HCAARVHVMN+T DPLS FR+VNV+G++ LA+QA AGVKR VF+SSIKV Sbjct: 61 ALRGCDTVIHCAARVHVMNDTEADPLSAFRKVNVQGTMNLARQAVAAGVKRFVFISSIKV 120 Query: 135 NGEQTAPGRPFTADDTPAPVDAYGISKMEAEQALMALAAEGGMEVVVIRPVLVYGPGVKA 194 NGE TAPG+P+TA D P P D YGISKMEAE L+ALA G+EVV+IRPVLVYGPGVKA Sbjct: 121 NGEGTAPGQPYTAHDRPQPQDPYGISKMEAEAQLLALAQASGLEVVIIRPVLVYGPGVKA 180 Query: 195 NFRSMMRWLQKGIPLPLGAITGNRRSLVALDNLVDLMTLCMHHPAAANEIFLVSDGEDLS 254 NF++MMRWL KG+PLP GAI NRRSLVALDNLVDL+ C HPAA N++FLVSDGEDLS Sbjct: 181 NFQAMMRWLNKGVPLPFGAID-NRRSLVALDNLVDLIVTCTDHPAAVNQVFLVSDGEDLS 239 Query: 255 TTELLRRMGQALGSPARLIPVPARVLEWGARLLGKGAVAQRLCGSLQVEIGKTRSVLDWS 314 TT LLRRM QALG+PARL+PVP VL GA LLG+ A+++RLCGSLQV+I KTR VL W Sbjct: 240 TTALLRRMAQALGAPARLLPVPGWVLSGGANLLGRTALSKRLCGSLQVDIEKTRKVLGWR 299 Query: 315 PPVSTDVALRRAA 327 PPVS D ALR A Sbjct: 300 PPVSVDAALRATA 312 >ref|YP_004352774.1| NAD-dependent epimerase/dehydratase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67770.1| NAD-dependent epimerase/dehydratase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 193/312 (61%), Positives = 235/312 (75%), Gaps = 4/312 (1%) Query: 16 ILVTGASGFVGSALLRHLAPRPDLALRAALRTAASGGLLPAGVEVVETGDLGPQTNWHAA 75 ILVTGASGFVG A+L L ++ A +R P + V QT W+A Sbjct: 5 ILVTGASGFVGGAVLTRLQADAGRSVIAVVRGDRHS---PGPISTVRIESFSAQTQWNAH 61 Query: 76 LTGIDTVVHCAARVHVMNETAGDPLSLFRRVNVEGSLALAQQARDAGVKRLVFLSSIKVN 135 L +DTV+HCAARVHVMN+T DPL+ FR+VNVEG+L A+QA +AGV+R +F+SSIKVN Sbjct: 62 LANVDTVIHCAARVHVMNDTEADPLAAFRQVNVEGTLNFARQAAEAGVRRFIFISSIKVN 121 Query: 136 GEQTAPGRPFTADDTPAPVDAYGISKMEAEQALMALAAEGGMEVVVIRPVLVYGPGVKAN 195 GE T+PG+P+ ADD PAP D YG+SK EAEQ L +A GMEVV+IRPVLVYGPGVKAN Sbjct: 122 GEGTSPGQPYAADDIPAPADPYGVSKQEAEQGLREVAQATGMEVVIIRPVLVYGPGVKAN 181 Query: 196 FRSMMRWLQKGIPLPLGAITGNRRSLVALDNLVDLMTLCMHHPAAANEIFLVSDGEDLST 255 F +MMRWL KG+PLP GAI NRRSLV++DNLVDL+ C+ HPAAAN+ FLVSDGEDLST Sbjct: 182 FLNMMRWLDKGVPLPFGAID-NRRSLVSIDNLVDLIVTCIDHPAAANQTFLVSDGEDLST 240 Query: 256 TELLRRMGQALGSPARLIPVPARVLEWGARLLGKGAVAQRLCGSLQVEIGKTRSVLDWSP 315 T LL RM +ALG PARLIPVP+ +L+ GA +LG+ A++QRLCGSLQV I KTR++L+W+P Sbjct: 241 TTLLSRMARALGKPARLIPVPSWMLDRGASMLGRKALSQRLCGSLQVNIEKTRTLLNWNP 300 Query: 316 PVSTDVALRRAA 327 PVS D AL A Sbjct: 301 PVSVDDALAETA 312 >ref|YP_913027.1| NAD-dependent epimerase/dehydratase [Chlorobium phaeobacteroides DSM 266] gb|ABL66603.1| NAD-dependent epimerase/dehydratase [Chlorobium phaeobacteroides DSM 266] Length = 319 Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 193/315 (61%), Positives = 243/315 (77%), Gaps = 5/315 (1%) Query: 16 ILVTGASGFVGSALLRHLAPRPDLALRAALRTAASGGLLPAGVEVVETGDLGPQTNWHAA 75 IL+TG +GFVGSAL + L + ++++RAA+R+ S LP GV++V+ GDL P +W A Sbjct: 2 ILLTGVTGFVGSALNKRLL-QDNVSVRAAVRSEISE--LPKGVDLVQVGDLNPDIDWRGA 58 Query: 76 LTGIDTVVHCAARVHVMNETAGDPLSLFRRVNVEGSLALAQQARDAGVKRLVFLSSIKVN 135 L+ +D +VH AARVHVM++ DPL+ FRRVN+EG+L LAQQA AGV+R VF+SS+KVN Sbjct: 59 LSEVDAIVHLAARVHVMHDVVADPLAEFRRVNLEGTLNLAQQAALAGVRRFVFVSSVKVN 118 Query: 136 GEQTAPGRPFTADDTPAPVDAYGISKMEAEQALMALAAEG-GMEVVVIRPVLVYGPGVKA 194 GE T G+PF+ DD P P D YGISK EAE+ L+ L +E GMEVV+IRP LVYGPGVKA Sbjct: 119 GESTVLGKPFSPDDQPDPQDHYGISKYEAERGLLDLVSEKTGMEVVIIRPPLVYGPGVKA 178 Query: 195 NFRSMMRWLQKGIPLPLGAITGNRRSLVALDNLVDLMTLCMHHPAAANEIFLVSDGEDLS 254 NF SMM WL +G+PLPLG++ N+RSLVALDNLVDL+ C+ HP A N+ FLVSDGEDLS Sbjct: 179 NFASMMSWLDRGVPLPLGSVH-NQRSLVALDNLVDLIVTCLDHPKAVNQTFLVSDGEDLS 237 Query: 255 TTELLRRMGQALGSPARLIPVPARVLEWGARLLGKGAVAQRLCGSLQVEIGKTRSVLDWS 314 T+ELL+RMG+ALG PARLIPVP V+++ A LLGKGAVAQRL GSLQV+ K R +L W Sbjct: 238 TSELLQRMGRALGKPARLIPVPVGVMQFAANLLGKGAVAQRLFGSLQVDSSKARDLLGWK 297 Query: 315 PPVSTDVALRRAASA 329 P V+ D AL++ A A Sbjct: 298 PVVTVDEALQKTADA 312 >ref|YP_550778.1| NAD-dependent epimerase/dehydratase [Polaromonas sp. JS666] gb|ABE45880.1| NAD-dependent epimerase/dehydratase [Polaromonas sp. JS666] Length = 320 Score = 364 bits (935), Expect = 9e-99, Method: Composition-based stats. Identities = 206/321 (64%), Positives = 248/321 (77%), Gaps = 3/321 (0%) Query: 14 MRILVTGASGFVGSALLRHLAPRPDLALRAALRTAASGGLLPAGVEVVETGDLGPQTNWH 73 M++LVTGA+GFVG A+ R L D+ +R A + + A V V GDL T+W Sbjct: 1 MKVLVTGANGFVGGAVWRRLHGMRDVQAVGCVRRAVAFAEVDALVASV--GDLSVSTDWS 58 Query: 74 AALTGIDTVVHCAARVHVMNETAGDPLSLFRRVNVEGSLALAQQARDAGVKRLVFLSSIK 133 +AL+G++ VVH AARVHVM + A DPL FRRVNV G+L LA+QA AGV+R VF+SSIK Sbjct: 59 SALSGVEVVVHAAARVHVMQDAATDPLEEFRRVNVLGTLQLARQAAAAGVRRFVFISSIK 118 Query: 134 VNGEQTAPGRPFTADDTPAPVDAYGISKMEAEQALMALAAEGGMEVVVIRPVLVYGPGVK 193 VNGE T PG PFTADD PAP+DAYGISKMEAEQ L LAA+ G+E+V+IRP LVYGPGVK Sbjct: 119 VNGEATQPGHPFTADDAPAPLDAYGISKMEAEQGLRELAAQTGLELVIIRPPLVYGPGVK 178 Query: 194 ANFRSMMRWLQKGIPLPLGAITGNRRSLVALDNLVDLMTLCMHHPAAANEIFLVSDGEDL 253 ANF++MMRWL +G+PLPLGAI N RSLVALDNLVDL+ C++HPAAAN+ FLVSDGEDL Sbjct: 179 ANFQAMMRWLARGMPLPLGAIH-NLRSLVALDNLVDLIVTCLNHPAAANQTFLVSDGEDL 237 Query: 254 STTELLRRMGQALGSPARLIPVPARVLEWGARLLGKGAVAQRLCGSLQVEIGKTRSVLDW 313 ST++LLRRMGQALG PARLIPVP+ +L+ GA +GK AVAQRLCGSLQV+I KTR +L W Sbjct: 238 STSQLLRRMGQALGKPARLIPVPSALLKLGAASVGKPAVAQRLCGSLQVDISKTRQLLGW 297 Query: 314 SPPVSTDVALRRAASAVYADA 334 PPVS D L++AA +A Sbjct: 298 RPPVSVDAGLKKAAEGYLREA 318