BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0588.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773910.1| drug efflux lipoprotein [Herbaspirillum sero... 779 0.0 ref|YP_004751489.1| outer membrane protein of RND family multidr... 563 e-158 ref|YP_297644.1| RND efflux system, outer membrane lipoprotein, ... 516 e-144 ref|YP_001100956.1| outer membrane transport protein involved in... 499 e-139 ref|YP_728155.1| outer membrane efflux protein [Ralstonia eutrop... 494 e-137 >ref|YP_003773910.1| drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ62002.1| drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 483 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 453/483 (93%), Positives = 479/483 (99%) Query: 3 MANLSLPRSPRLLQLCAALMVAGVLGGCSLAPTYDRPQAPVETAYPADAAGRAELQAVNL 62 MANLS+PRSPRLL +CAAL++AGVLGGCSLAPTY+RPQAPVE++YPADAAGRAELQAVNL Sbjct: 1 MANLSMPRSPRLLHMCAALVMAGVLGGCSLAPTYERPQAPVESSYPADAAGRAELQAVNL 60 Query: 63 GWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNVNGSAARTR 122 GWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLN++G+AARTR Sbjct: 61 GWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNLSGNAARTR 120 Query: 123 TAASQSLTGQPFISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLI 182 TAASQSLTGQP ISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISL+ Sbjct: 121 TAASQSLTGQPTISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLV 180 Query: 183 AQVAQAYLSERSYAEQLQLANDTLKSRESNLDLAQKRFDVGASSALDFRLTQTLVESARV 242 AQVAQAYL+ERSYAEQL+LA++TLKSR+SNLDLAQKR DVGAS+ALDFRLTQTLVESARV Sbjct: 181 AQVAQAYLAERSYAEQLKLADETLKSRQSNLDLAQKRLDVGASTALDFRLTQTLVESARV 240 Query: 243 SKSQLERQRAQAENALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSA 302 +K+QLERQRAQAENALTLLVGKK+G+LPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSA Sbjct: 241 AKTQLERQRAQAENALTLLVGKKIGELPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSA 300 Query: 303 EQSLLAANANIGAARAAFFPRISLTGSYGSASSTLGGLFESGSGAWSFGPSLSLPIFDFG 362 EQSLLAANANIGAARAAFFPRISLTG++GSASSTLGGLFESGSGAWSFGPSLSLPIFDFG Sbjct: 301 EQSLLAANANIGAARAAFFPRISLTGNFGSASSTLGGLFESGSGAWSFGPSLSLPIFDFG 360 Query: 363 RNSANLDLAEVRKNKAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLK 422 RNSANLDLAEVRKNKAVVTYEK IQTAFREVADALVARG+LD+QVKAQEAFLAAQQERLK Sbjct: 361 RNSANLDLAEVRKNKAVVTYEKAIQTAFREVADALVARGSLDEQVKAQEAFLAAQQERLK 420 Query: 423 LTELRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENTVSVA 482 LT+LRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENTVSVA Sbjct: 421 LTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENTVSVA 480 Query: 483 AKQ 485 AKQ Sbjct: 481 AKQ 483 >ref|YP_004751489.1| outer membrane protein of RND family multidrug efflux pump [Collimonas fungivorans Ter331] gb|AEK60666.1| Outer membrane protein of RND family multidrug efflux pump [Collimonas fungivorans Ter331] Length = 480 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 329/469 (70%), Positives = 389/469 (82%), Gaps = 1/469 (0%) Query: 16 QLCAALMVAGVLGGCSLAPTYDRPQAPVETAYPADAAGRAELQAVNLGWRQFFPDQRLQQ 75 QL AL++AGVL GC++APTY RP+APV +YPA A G+A+L A LGWRQFFPDQRLQ Sbjct: 13 QLTGALLLAGVLSGCTMAPTYVRPEAPVAGSYPAAADGQAQLDAAALGWRQFFPDQRLQA 72 Query: 76 LIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNVNGSAARTRTAASQSLTGQPFI 135 LIA+ALENNRDLRTA LNIE+ARAQY I AD LPN + N S R RTA Q + GQ + Sbjct: 73 LIASALENNRDLRTAALNIEQARAQYDITAADALPNFDGNFSRTRGRTATYQLVPGQNAV 132 Query: 136 SNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLIAQVAQAYLSERSY 195 +N YQVGL + ++ELDFFGRVR+LKDAALASYL+TEEA++SAQISLI+QVAQAYL+E+SY Sbjct: 133 NNVYQVGLNMTSFELDFFGRVRSLKDAALASYLATEEARQSAQISLISQVAQAYLTEQSY 192 Query: 196 AEQLQLANDTLKSRESNLDLAQKRFDVGASSALDFRLTQTLVESARVSKSQLERQRAQAE 255 AEQ +LA TL SR + L + RF+VGASS LD R ++TLV+SARVS + L RQR QA Sbjct: 193 AEQERLARQTLDSRLDDYKLDKMRFEVGASSELDLRNSETLVQSARVSLTTLVRQRGQAT 252 Query: 256 NALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIGA 315 NAL LLVGK +GDLP Q LSDE+IVTDIPAGLPSDLL RPDIR AEQ L +ANANIGA Sbjct: 253 NALVLLVGKPLGDLPAPQSLSDEQIVTDIPAGLPSDLLNRRPDIREAEQQLRSANANIGA 312 Query: 316 ARAAFFPRISLTGSYGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVRK 375 ARAAFFP ISLT G+AS++LG LF +GS WSF P L+LPIF+ GRN ANL L+E+RK Sbjct: 313 ARAAFFPTISLTAGIGNASTSLGSLFSAGSRTWSFVPQLTLPIFEGGRNRANLSLSEIRK 372 Query: 376 NKAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTELRFKNGIASS 435 N A+ +YEKTIQ+AFREVADALVARGTL++Q+ AQ+AFL AQ++R+KLTELR+KNGIASS Sbjct: 373 NLAIASYEKTIQSAFREVADALVARGTLEEQLAAQDAFLKAQEQRVKLTELRYKNGIASS 432 Query: 436 LDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENTVSVAAK 484 D+L+AQRDLFSAQQ+LIQ RQLRLNNAIDLY++LGGGLNENT +VAAK Sbjct: 433 TDRLNAQRDLFSAQQSLIQTRQLRLNNAIDLYRSLGGGLNENT-AVAAK 480 >ref|YP_297644.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia eutropha JMP134] gb|AAZ62800.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia eutropha JMP134] Length = 496 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 295/467 (63%), Positives = 359/467 (76%), Gaps = 13/467 (2%) Query: 23 VAGVLGGCSLAPTYDRPQAPVETAYPADAAGRAELQ--------AVNLGWRQFFPDQRLQ 74 VAGVL GC+LAP Y+RP PV +P G A + A ++GWR+FF D RLQ Sbjct: 11 VAGVLTGCTLAPKYERPVPPVAAGFPGAPEGYATAEVKSGETRRATDIGWREFFRDPRLQ 70 Query: 75 QLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNVNGSAARTRTAASQSLT--GQ 132 LIA +LENNRDLR A L IEEAR+ YQI RADLLP +N N R RT+A+Q+ T GQ Sbjct: 71 TLIATSLENNRDLRQAALRIEEARSLYQIQRADLLPTVNANAGYTRARTSAAQTATVLGQ 130 Query: 133 PFISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLIAQVAQAYLSE 192 P +S+ Y VGL + +YELDFFGRVR+L +AALA Y +TEEA +SA ISL+++VA+AYLSE Sbjct: 131 PSVSDLYSVGLGISSYELDFFGRVRSLSNAALAQYFATEEAHRSAYISLVSEVAKAYLSE 190 Query: 193 RSYAEQLQLANDTLKSRESNLDLAQKRFDVGASSALDFRLTQTLVESARVSKSQLERQRA 252 RS+AEQ ++A DTLK+RES LA++RFDVGA+SALD R ++LV ARVS +QL RQRA Sbjct: 191 RSFAEQYEIARDTLKARESTYALAKQRFDVGATSALDLRDNESLVAQARVSAAQLARQRA 250 Query: 253 QAENALTLLVGKKVG---DLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAA 309 QA+NAL +LVGK +G +LP LSDE+I++DIP GLPSDLL RPDIR AEQ LL+A Sbjct: 251 QAQNALEVLVGKPIGSIENLPEPMRLSDERIISDIPEGLPSDLLEQRPDIRQAEQLLLSA 310 Query: 310 NANIGAARAAFFPRISLTGSYGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLD 369 NANIGAARAAFFPRI+LT + G+ S T GLF++G+ AWSF P L+LPIFD+GRN +NLD Sbjct: 311 NANIGAARAAFFPRITLTTNIGTISPTFSGLFDAGTKAWSFAPQLTLPIFDYGRNKSNLD 370 Query: 370 LAEVRKNKAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTELRFK 429 LA VRKN V YEKTIQTAF EVADALVARGTL+DQV QE A+ R +L LRF+ Sbjct: 371 LANVRKNIEVANYEKTIQTAFAEVADALVARGTLEDQVAGQEQVRNAEAARYELARLRFR 430 Query: 430 NGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNE 476 +G+AS LD+LDAQR LF+A+QALIQARQLRLNN+IDLY++LGGGL E Sbjct: 431 SGVASYLDELDAQRQLFTAEQALIQARQLRLNNSIDLYRSLGGGLKE 477 >ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] emb|CAL62835.1| Outer membrane protein oprM [Herminiimonas arsenicoxydans] Length = 474 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 310/471 (65%), Positives = 367/471 (77%), Gaps = 2/471 (0%) Query: 16 QLCAALMVAGVLGGCSLAPTYDRPQAPVETAYPADAAGRAELQ-AVNLGWRQFFPDQRLQ 74 QL ++ A VL CS+AP Y RP APV YPA +A + Q A GWR FFPDQRLQ Sbjct: 4 QLTLTVLAASVLSACSMAPKYTRPDAPVAADYPAASAAADKQQRAHETGWRNFFPDQRLQ 63 Query: 75 QLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNVNGSAARTRTAASQSLTGQPF 134 LI AAL NNRDLR A L IEEARAQY I ADLLPNLN + +R RT AS S TG Sbjct: 64 ALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDS 123 Query: 135 ISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLIAQVAQAYLSERS 194 +S++YQVGL++ ++ELDFFGRV +L DAALASYL+TEEAQ++A ISL+A+VA+AYL+ER+ Sbjct: 124 VSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERA 183 Query: 195 YAEQLQLANDTLKSRESNLDLAQKRFDVGASSALDFRLTQTLVESARVSKSQLERQRAQA 254 +AEQL LA TLKSR + DLA++RF+VGASSALD R + L++SARV++ L RQRAQA Sbjct: 184 FAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQA 243 Query: 255 ENALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIG 314 NALTLLVG+ + P AQ LS + IVTDIPAGLPSDLLT RPDIRSAEQSLLAANANIG Sbjct: 244 LNALTLLVGQPLTGFPEAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAANANIG 303 Query: 315 AARAAFFPRISLTGSYGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVR 374 AARAAFFPRISLT G+ASSTL LF+SG+ AW+F P L LPIFD GRNSANL L+EVR Sbjct: 304 AARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTLSEVR 363 Query: 375 KNKAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTELRFKNGIAS 434 KN A+ YEK+IQ+AFREV+DALVAR L++Q+ AQ AQ ERLKL + RF+NGIAS Sbjct: 364 KNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQNGIAS 423 Query: 435 SLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNE-NTVSVAAK 484 SLD LDAQR+LFSA+Q L+QAR LRL NAIDLY++LGGGL E N+V+ K Sbjct: 424 SLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGLTESNSVAATTK 474 >ref|YP_728155.1| outer membrane efflux protein [Ralstonia eutropha H16] emb|CAJ94787.1| outer membrane efflux protein [Ralstonia eutropha H16] Length = 495 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 294/469 (62%), Positives = 360/469 (76%), Gaps = 13/469 (2%) Query: 23 VAGVLGGCSLAPTYDRPQAPVETAYPADAAGRAELQA--------VNLGWRQFFPDQRLQ 74 VAGVL GC+LAP YDRP PV ++P G A +A V++GWR+FF D RLQ Sbjct: 11 VAGVLTGCTLAPHYDRPAPPVADSFPVAPEGYATAEAKSGETRRAVDIGWREFFRDPRLQ 70 Query: 75 QLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNVNGSAAR--TRTAASQSLTGQ 132 LIA +L+NNRDLRTA L IEEARA YQ+ RADLLP +N N + R T A + ++ GQ Sbjct: 71 SLIATSLDNNRDLRTAALRIEEARALYQVQRADLLPTVNANAAYTRASTNAAGTSTVLGQ 130 Query: 133 PFISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLIAQVAQAYLSE 192 P ++ YQ L + +YELDFFGRVR+L +AALA Y STEEA +SA ISL+++VA+AYLSE Sbjct: 131 PGVTQVYQANLGISSYELDFFGRVRSLSNAALAQYFSTEEAHRSAYISLVSEVAKAYLSE 190 Query: 193 RSYAEQLQLANDTLKSRESNLDLAQKRFDVGASSALDFRLTQTLVESARVSKSQLERQRA 252 RS+AEQ ++A DTLK+RES LA++RFDVGA+SALD R ++LV ARV+ +QL RQRA Sbjct: 191 RSFAEQYEIARDTLKARESTYGLAKQRFDVGATSALDLRDNESLVAQARVAAAQLARQRA 250 Query: 253 QAENALTLLVGK---KVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAA 309 QA+NAL +LVGK +G+LP LSDE+I++DIPAGLPSDLL RPDIR AEQ LL+A Sbjct: 251 QAQNALEVLVGKPIGSIGNLPEPMRLSDERIISDIPAGLPSDLLEQRPDIRQAEQQLLSA 310 Query: 310 NANIGAARAAFFPRISLTGSYGSASSTLGGLFESGSGAWSFGPSLSLPIFDFGRNSANLD 369 NANIGAARAAFFPRI+LT S G+ S T LF++G+ AWSF P L+LPIFD+GRN +NLD Sbjct: 311 NANIGAARAAFFPRITLTTSVGTISPTFSNLFDAGTKAWSFAPQLTLPIFDYGRNKSNLD 370 Query: 370 LAEVRKNKAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTELRFK 429 LA VRKN + YEKTIQTAF EVADALVARGTL+DQV QE A+ R +L LRF+ Sbjct: 371 LANVRKNIQIANYEKTIQTAFAEVADALVARGTLEDQVSGQEEVRNAEAARYELARLRFR 430 Query: 430 NGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGLNENT 478 +G+AS LD+LDAQR LF+A+QALIQARQLRLNNAIDLY++LGGGL EN+ Sbjct: 431 SGVASYLDELDAQRQLFTAEQALIQARQLRLNNAIDLYRSLGGGLQENS 479