BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0585.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773913.1| transcription regulator protein [Herbaspiril... 391 e-107 ref|YP_001354625.1| TetR/AcrR family transcriptional regulator [... 247 7e-64 ref|YP_004751492.1| transcriptional repressor for multidrug effl... 229 2e-58 ref|ZP_08273881.1| Transcription repressor of multidrug efflux p... 217 8e-55 ref|YP_002007164.1| TetR family transcriptional regulator [Cupri... 213 2e-53 >ref|YP_003773913.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62005.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 197/210 (93%), Positives = 205/210 (97%) Query: 1 MARSTKEEALETRARILDAAEQVFHERGVSQTSLAHVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETR+RILDAAEQVFHERGVSQTSLA VAKAAEVTRGAIYWHFKNKSDLFD Sbjct: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSG+YVLTMAATDERCRRVFDIIFNKCEFA Sbjct: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILLNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 DAHDPILIRQRECHVDG+LRLEQIL NAVARGQLPATLDIRLACL HATFSGLLTDWFF Sbjct: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQK 210 SPDSFDLV +GER+LAAS++ALKTAPSLQ+ Sbjct: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQR 210 >ref|YP_001354625.1| TetR/AcrR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90501.1| TetR/AcrR family transcriptional regulator, acrAB operon repressor [Janthinobacterium sp. Marseille] Length = 213 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 128/210 (60%), Positives = 154/210 (73%) Query: 1 MARSTKEEALETRARILDAAEQVFHERGVSQTSLAHVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETR RILDAAE+VF RG++Q+SLA VA AA+VTRGAIYWHFKNKSDLF+ Sbjct: 1 MARSTKEEALETRNRILDAAEEVFFTRGLAQSSLADVAVAADVTRGAIYWHFKNKSDLFE 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPME ++ V DPLG + I++L + R RRV DIIF KCE Sbjct: 61 AMCERVRLPMETMMTTPGEKFVRDPLGHLRHTWIWLLRDVVDNPRSRRVLDIIFLKCELV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILLNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 D +DPI +RQRECH +GL + IL AVA GQLPA LD +LA L+ H++ GLLTDW F Sbjct: 121 DHNDPIWVRQRECHREGLENMRSILEEAVAMGQLPADLDTQLAVLSLHSSLVGLLTDWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQK 210 SPDSFDL + E ++ A L L+ APSL++ Sbjct: 181 SPDSFDLKEVVEPLVDACLDGLRNAPSLRR 210 >ref|YP_004751492.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] gb|AEK60669.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] Length = 213 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 112/210 (53%), Positives = 147/210 (70%) Query: 1 MARSTKEEALETRARILDAAEQVFHERGVSQTSLAHVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETR+RILDAA +VFH+ GV++T+LA VA AA+VTRGAIYWHFKNKSDLFD Sbjct: 1 MARSTKEEALETRSRILDAAAEVFHQHGVARTTLADVASAADVTRGAIYWHFKNKSDLFD 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPMEA++E A DPL QF ++ L A + R++F+I+ +KCE Sbjct: 61 AMCERVRLPMEAMIERTADENAHDPLNQFRNRCLFTLQEATLNPESRKIFEIVLHKCELV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILLNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 D DPI IRQ EC + G +E++L A+A+GQLP LD LA + G+L +W F Sbjct: 121 DPEDPIYIRQHECFLQGRTDIERLLRFAIAKGQLPRELDPILAAVMVQGLLFGILHNWTF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQK 210 SP SFDL ++ +++ ++ KT+P + K Sbjct: 181 SPQSFDLAENVSKVVDNCIHMFKTSPFILK 210 >ref|ZP_08273881.1| Transcription repressor of multidrug efflux pump acrAB operon [Oxalobacteraceae bacterium IMCC9480] gb|EGF32646.1| Transcription repressor of multidrug efflux pump acrAB operon [Oxalobacteraceae bacterium IMCC9480] Length = 225 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 114/210 (54%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 1 MARSTKEEALETRARILDAAEQVFHERGVSQTSLAHVAKAAEVTRGAIYWHFKNKSDLFD 60 M+RSTKEEALETR+RILDAAE VFH GV++TSLA VA AA VTRGAIYWHFKNK DLF+ Sbjct: 15 MSRSTKEEALETRSRILDAAENVFHAHGVTRTSLADVATAANVTRGAIYWHFKNKGDLFN 74 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGI-YVLTMAATDERCRRVFDIIFNKCEF 119 AMCER LP+EA++ ++A +PL Q LR+GI + + + + RRVF++IF+KCE Sbjct: 75 AMCERAHLPLEAMVLQSADHPDREPLDQ-LRAGILFAINDIVHNPQTRRVFEVIFHKCEL 133 Query: 120 ADAHDPILIRQRECHVDGLLRLEQILLNAVARGQLPATLDIRLACLAAHATFSGLLTDWF 179 D DPI +RQ E D + +E++L+ A A+GQLPATLD +LA ++ HA GL+ +W Sbjct: 134 VDVDDPIRVRQHEGFNDCMHNIERLLILACAQGQLPATLDTQLATVSLHAMLEGLINNWL 193 Query: 180 FSPDSFDLVKDGERILAASLYALKTAPSLQ 209 F+P SFDL R+L A L+ A SL+ Sbjct: 194 FAPQSFDLGGQSGRLLDACFDMLRCAESLR 223 >ref|YP_002007164.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ71103.1| transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 113/209 (54%), Positives = 142/209 (67%) Query: 1 MARSTKEEALETRARILDAAEQVFHERGVSQTSLAHVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR RILDAAE VFH RGV++ SLA +A+AA VTRGAIYWHFKNKSD+F Sbjct: 1 MVRRTKEEALETRHRILDAAEAVFHARGVARPSLADIAEAAGVTRGAIYWHFKNKSDVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120 AMC+RV LP+EA++E + EDPLG YV+ + R RRVF+IIF+KCE Sbjct: 61 AMCDRVHLPVEALIEPERLARQEDPLGGIRDICAYVMRQTVINPRWRRVFEIIFHKCEMV 120 Query: 121 DAHDPILIRQRECHVDGLLRLEQILLNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180 + I RQR+ H DGL+++ + L AV RGQLPA LD+ LA A HA G+L W F Sbjct: 121 QDNGAIFERQRQSHQDGLVKMREHLRLAVERGQLPADLDLDLAVNAFHAAVGGVLAHWLF 180 Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQ 209 SP F+L + ER+ A + LK +P+L+ Sbjct: 181 SPQDFNLDANAERLSDAFIDTLKFSPALR 209